CPNE8 Gene
protein-coding GIFtS : 49
GCID: GC12 M039045
copine VIII
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Aliasesfor CPNE8 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Copine VIII 1 2 3 Copine-81
Export aliases for CPNE8 gene to outside databases Previous GC identifers: GC12M037332 GC12M036072
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Summariesfor CPNE8 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for CPNE8 : Calcium-dependent membrane-binding proteins may regulate molecular events at the interface of the cell membrane and cytoplasm. This gene is one of several genes that encode a calcium-dependent protein containing two N-terminal type II C2 domains and an integrin A domain-like sequence in the C-terminus. (provided by RefSeq, Jul 2008) UniProtKB/Swiss-Prot: CPNE8_HUMAN, Q86YQ8 Function : May function in membrane trafficking. Exhibits calcium-dependent phospholipid binding properties (Bysimilarity) Gene Wiki entry for CPNE8
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Genomic Viewsfor CPNE8 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000012.11 NC_018923.1 NT_029419.12 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the CPNE8 gene promoter: ER-alpha Bach1 GATA-3 Bach2 ATF-2 FOXO3 E4BP4 FOXO3b HOXA5 FOXO3a Other transcription factors Search SABiosciences Chromatin IP Primers for CPNE8 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CPNE8
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 12q12 Ensembl cytogenetic band: 12q12 HGNC cytogenetic band: 12q12 CPNE8 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 12 GeneLoc Exon Structure
GeneLoc location for GC12M039045: view genomic region
(about GC identifiers )
Start:
39,040,624 bp from pter
End:
39,301,232 bp from pter
Size:
260,609 bases
Orientation:
minus strand
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Proteinsfor CPNE8 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: CPNE8_HUMAN, Q86YQ8 (See
protein sequence )Recommended Name: Copine-8 Size : 564 amino acids; 63108 Da
Secondary accessions : Q2TB41Explore the universe of human proteins at neXtProt for CPNE8: NX_Q86YQ8 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q86YQ8 CPNE8 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_705898.1 ENSEMBL proteins: ENSP00000329748 ENSP00000439237 ENSP00000353633 ENSP00000447761 Human Recombinant Protein Products: CPNE8 Antibody Products: Assay Products for CPNE8:
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Protein
Domains / Familiesfor CPNE8 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
CPNE8 for domains About GeneDecksing 5 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q86YQ8 ProtoNet protein and cluster: Q86YQ8
3 Blocks protein families : IPB000008 C2 domain IPB002035 Von Willebrand factor type A domain signature IPB010734 Copine UniProtKB/Swiss-Prot: CPNE8_HUMAN, Q86YQ8 Similarity : Belongs to the copine familySimilarity : Contains 2 C2 domainsSimilarity : Contains 1 VWFA domain
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Functionfor CPNE8 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: CPNE8_HUMAN, Q86YQ8 Function : May function in membrane trafficking. Exhibits calcium-dependent phospholipid binding properties (Bysimilarity)
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for CPNE8 (see all 5 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for CPNE8OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: CPNE8 (NM_153634 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CPNE8 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat CPNE8
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CPNE8
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Pathways & Interactionsfor CPNE8 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CPNE8 STRING Interaction
Network Preview (showing 2 interactants - click image to see more details)4 Interacting proteins for CPNE8 (Q86YQ8 3 ENSP00000329748 4 ) via UniProtKB, MINT, STRING , and/or I2D About this table
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Drugs & Compoundsfor CPNE8 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for CPNE8 1 HMDB Compound for CPNE8 About this table Search CenterWatch for drugs/clinical trials and news about CPNE8
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Transcriptsfor CPNE8 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
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GenScript ,
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Primers from
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QIAGEN
)About This Section REFSEQ mRNAs for CPNE8 gene: NM_153634.2 Unigene Cluster for CPNE8:
Copine VIII Hs.40910 [show with all ESTs ] Unigene Representative Sequence: BX538055 9 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000552259 ENST00000331366 (uc001rls.1 ) ENST00000538596 (uc001rlr.1 )ENST00000546603 ENST00000360449 ENST00000547417 ENST00000549842 ENST00000551855 ENST00000550863 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for CPNE8 (see all 5 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for CPNE8OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: CPNE8 (NM_153634 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CPNE8 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat CPNE8
Additional cDNA sequence: AK074223.1 AK094998.1 AK098593.1 AK307908.1 AY177785.1 BC046366.1 BC048260.1 BC068040.1 BC110577.1 BC110578.1 BX538055.1
10 DOTS entries : DT.100690399 DT.442159
DT.100033997 DT.40188510 DT.91661483 DT.92416947 DT.75146061 DT.95110919 DT.97808340 DT.91718466 24/63 AceView cDNA sequences (see all 63 ):
BG034542 AW470493 BM672075 BC048260 BC046366 AI188010 AI014430 BX111100 AA976153 AK098593 CA419647 CR610762 BM720158 NM_153634 AW014148 BE646019 BX091603 BC068040 AA431782 AK094998 AK074223 BF476090 BP370374 AW293893 GeneLoc Exon Structure
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Expression for CPNE8 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section CPNE8 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: --
About this image CPNE8 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See CPNE8 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for CPNE8 SOURCE GeneReport for Unigene cluster: Hs.40910 SABiosciences Custom PCR Arrays for CPNE8 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for CPNE8Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat CPNE8 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat CPNE8 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat CPNE8 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CPNE8
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Orthologsfor CPNE8 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of eukaryotes.
Orthologs for CPNE8 gene from 6/22 species (see all 22 ) About this table
ENSEMBL Gene Tree for CPNE8 (if available)TreeFam Gene Tree for CPNE8 (if available)
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Paralogsfor CPNE8 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for CPNE8 gene CPNE9 2 CPNE2 2 CPNE6 2 CPNE3 2 CPNE5 2 CPNE4 2 CPNE7 2 CPNE1 2 8 SIMAP similar genes for CPNE8 using alignment to 4 protein entries: CPNE8_HUMAN (see all proteins ):CPNE9 CPNE5 CPNE4 CPNE2 CPNE1 CPNE3 CPNE6 CPNE7
CPNE8 for paralogs About GeneDecksing
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Genomic Variantsfor CPNE8 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 12 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for CPNE8 (39040624 - 39290624 bp, first 250kb of CPNE8)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 2 variations for CPNE8 1 CNV : 5309 1 Indel : 11608
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing CPNE8
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Disorders
/ Diseasesfor CPNE8 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
CPNE8 for disorders About GeneDecksing 4 diseases for CPNE8 : About MalaCards prion disease hermaphroditism infertility leukemia 1 disease from the University of Copenhagen DISEASES database for CPNE8 :Distal arthrogryposis Export disorders for CPNE8 gene to outside databases
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Publicationsfor CPNE8 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for CPNE8 gene, integrated from 9 sources (see all 21 ): (articles sorted by number of sources associating them with CPNE8) Utopia : connect your pdf to the dynamic world of online information
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Cloning, molecular characterization, and expression analysis of copine 8. (PubMed id 12670487) 1 , 3 Maitra R.... Lee B. (2003) A census of human soluble protein complexes. (PubMed id 22939629) 1 Havugimana P.C....Emili A. (2012) A proteome-wide, quantitative survey of in vivo ubiqui tylation sites reveals widespread regulatory roles. (PubMed id 21890473) 1 Wagner S.A....Choudhary C. (2011) Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983) 1 Kim W....Gygi S.P. (2011) Ubiquitin ligase substrate identification through qua ntitative proteomics at both the protein and peptide levels. (PubMed id 21987572) 1 Lee K.A....Doedens J.R. (2011) Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048) 1 Danielsen J.M....Nielsen M.L. (2011) Ubiquitin-mediated proteolysis of HuR by heat shock. (PubMed id 19322201) 1 Abdelmohsen K....Gorospe M. (2009) A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648) 2 Dephoure N.... Gygi S.P. (2008) Functional specialization of beta-arrestin interactions revealed by proteomic analysis. (PubMed id 17620599) 1 Xiao K....Lefkowitz R.J. (2007)
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External Searches for CPNE8 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing CPNE8 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing CPNE8 gene
(According to HUGE )
About This Section --
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Specialized Databases showing CPNE8 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for CPNE8 gene: Search GeneIP for patents involving CPNE8 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor CPNE8 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for CPNE8 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for CPNE8 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for CPNE8 OriGene Protein Over-expression Lysate for CPNE8 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for CPNE8 OriGene 3'-UTR Clone for CPNE8 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for CPNE8 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for CPNE8 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for CPNE8 OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for CPNE8 OriGene Custom Protein Services for CPNE8 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat CPNE8 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing CPNE8 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CPNE8 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat CPNE8 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat CPNE8 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat CPNE8
Search Tocris compounds for CPNE8
CPNE8 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CPNE8
ThermoFisher Antibodies for CPNE8
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat CPNE8
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Aliases for CPNE8
Databases for CPNE8
Disorders / Diseases for CPNE8
Domains / Families for CPNE8
Drugs / Compounds for CPNE8
Expression for CPNE8
Function for CPNE8
Genomic Views for CPNE8
Intellectual Property for CPNE8
Orthologs for CPNE8
Paralogs for CPNE8
Pathways / Interactions for CPNE8
Products for CPNE8
Proteins for CPNE8
Publications for CPNE8
Search Box for CPNE8
Summaries for CPNE8
Transcripts for CPNE8
Variants for CPNE8
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