CPNE7 Gene
protein-coding GIFtS : 51
GCID: GC16 P089652
copine VII
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Aliasesfor CPNE7 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Copine VII 1 2 3 Copine 72 Copine-71
Export aliases for CPNE7 gene to outside databases Previous GC identifers: GC16P080962 GC16P090630 GC16P089345 GC16P089385 GC16P088169 GC16P089643 GC16P075338 GC16P089646
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Summariesfor CPNE7 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for CPNE7 : This gene encodes a member of the copine family, which is composed of calcium-dependent membrane-binding proteins. The gene product contains two N-terminal C2 domains and one von Willebrand factor A domain. The encoded protein may be involved in membrane trafficking. Two alternatively spliced transcript variants encoding different isoforms have been found for this gene. (provided by RefSeq, Nov 2008) UniProtKB/Swiss-Prot: CPNE7_HUMAN, Q9UBL6 Function : May function in membrane trafficking. Exhibits calcium-dependent phospholipid binding properties (Bysimilarity)
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Genomic Viewsfor CPNE7 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000016.9 NC_018927.1 NT_010542.15 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the CPNE7 gene promoter: RFX1 Pax-5 AML1a LCR-F1 RORalpha2 E47 PPAR-alpha POU2F1 POU2F1a ZID Other transcription factors Search SABiosciences Chromatin IP Primers for CPNE7 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat CPNE7
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 16q24.3 Ensembl cytogenetic band: 16q24.3 HGNC cytogenetic band: 16q24.3 CPNE7 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 16 GeneLoc Exon Structure
GeneLoc location for GC16P089652: view genomic region
(about GC identifiers )
Start:
89,642,176 bp from pter
End:
89,663,654 bp from pter
Size:
21,479 bases
Orientation:
plus strand
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Proteinsfor CPNE7 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: CPNE7_HUMAN, Q9UBL6 (See
protein sequence )Recommended Name: Copine-7 Size : 633 amino acids; 70294 DaAlternative splicing : 2 isoforms : Q9UBL6-1 Q9UBL6-2 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for CPNE7: NX_Q9UBL6 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q9UBL6 CPNE7 Protein expression data from MOPED and PaxDb : About this image REFSEQ proteins (2 alternative transcripts):
NP_055242.1 NP_705900.1 ENSEMBL proteins: ENSP00000268720 ENSP00000431863 ENSP00000317374 ENSP00000435876 ENSP00000455086 ENSP00000434886 Human Recombinant Protein Products for CPNE7: CPNE7 Antibody Products: Assay Products for CPNE7:
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Protein
Domains / Familiesfor CPNE7 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
CPNE7 for domains About GeneDecksing 5 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q9UBL6 ProtoNet protein and cluster: Q9UBL6
2 Blocks protein families : IPB000008 C2 domain IPB010734 Copine UniProtKB/Swiss-Prot: CPNE7_HUMAN, Q9UBL6 Similarity : Belongs to the copine familySimilarity : Contains 2 C2 domainsSimilarity : Contains 1 VWFA domain
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Functionfor CPNE7 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory ,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
Sirion Biotech ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Sirion Biotech ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
Sirion Biotech ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Molecular Function: UniProtKB/Swiss-Prot Summary: CPNE7_HUMAN, Q9UBL6 Function : May function in membrane trafficking. Exhibits calcium-dependent phospholipid binding properties (Bysimilarity)
Genatlas biochemistry entry for CPNE7 : copine VII,member of the COPINE family,potential tumor suppressor,but excluded as a candidate gene in breast cancers (TSG16A,TSG16D) Gene Ontology (GO): 1 molecular function term (GO ID links to tree view) : About this table
CPNE7 for ontologies About GeneDecksing Animal Models: Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for CPNE7 (see all 4 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for CPNE7 (see all 2 )OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): CPNE7 (NM_014427 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CPNE7 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat CPNE7
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CPNE7
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Pathways & Interactionsfor CPNE7 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CPNE7 STRING Interaction
Network Preview (showing 5 interactants - click image to see more details)5/9 Interacting proteins for CPNE7 (Q9UBL6 2 , 3 ENSP00000268720 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 9 )About this table Gene Ontology (GO): 2 biological process terms (GO ID links to tree view) : About this table
CPNE7 for ontologies About GeneDecksing
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Drugs & Compoundsfor CPNE7 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for CPNE7 1 HMDB Compound for CPNE7 About this table Search CenterWatch for drugs/clinical trials and news about CPNE7
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Transcriptsfor CPNE7 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
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siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
Sirion Biotech ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
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SwitchGear Genomics ,
GenScript ,
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Primers from
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SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for CPNE7 gene (2 alternative transcripts): NM_014427.4 NM_153636.2 Unigene Cluster for CPNE7:
Copine VII Hs.461775 [show with all ESTs ] Unigene Representative Sequence: NM_014427 9 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000268720 (uc002fnp.3 uc002fnq.3 ) ENST00000525982 ENST00000319518 ENST00000532500 ENST00000529800 ENST00000568977 ENST00000566398 ENST00000526232 ENST00000564421 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for CPNE7 (see all 4 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for CPNE7 (see all 2 )OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): CPNE7 (NM_014427 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CPNE7 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat CPNE7
Additional cDNA sequence: AJ133798.1 AK123526.1 BC035334.1 BC064577.1
12 DOTS entries : DT.436487 DT.100020557
DT.97805165 DT.92419539 DT.99977642 DT.91677324 DT.97824111 DT.97842295 DT.97842296 DT.40207136 DT.412253 DT.75149716 24/60 AceView cDNA sequences (see all 60 ):
BQ014714 BM987502 BM797064 BC035334 BQ009550 BC064577 NM_153636 Z39757 AJ133798 BM823274 BM824628 NM_014427 AL539371 AK123526 BI914091 BX444965 BX431644 BI918287 CA431690 BV176556 BX281473 BX420737 BX441703 BM824893 GeneLoc Exon Structure
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Expression for CPNE7 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section CPNE7 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: GGGTCTGCGGAbout this image CPNE7 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table
See CPNE7 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for CPNE7 SOURCE GeneReport for Unigene cluster: Hs.461775 SABiosciences Custom PCR Arrays for CPNE7 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for CPNE7Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat CPNE7 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat CPNE7 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat CPNE7 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CPNE7
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Orthologsfor CPNE7 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of eukaryotes.
Orthologs for CPNE7 gene from 6/20 species (see all 20 ) About this table
ENSEMBL Gene Tree for CPNE7 (if available)TreeFam Gene Tree for CPNE7 (if available)
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Paralogsfor CPNE7 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for CPNE7 gene CPNE9 2 CPNE2 2 CPNE6 2 CPNE3 2 CPNE5 2 CPNE8 2 CPNE4 2 CPNE1 2 8 SIMAP similar genes for CPNE7 using alignment to 5 protein entries: CPNE7_HUMAN (see all proteins ):CPNE4 CPNE2 CPNE6 CPNE3 CPNE9 CPNE5 CPNE1 CPNE8
CPNE7 for paralogs About GeneDecksing
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Genomic Variantsfor CPNE7 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 16 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for CPNE7 (89642176 - 89663654 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 10 variations for CPNE7 4 CNVs : 7139 72698 30798 4018 6 Indels : 45490 45491 72699 11852 33637 25742
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing CPNE7
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Disorders
/ Diseasesfor CPNE7 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
CPNE7 for disorders About GeneDecksing
OMIM gene information: 605689
OMIM disorders : --4 diseases for CPNE7 : About MalaCards sporadic breast cancer breast cancer hermaphroditism infertility Export disorders for CPNE7 gene to outside databases
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Publicationsfor CPNE7 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for CPNE7 gene integrated from 9 sources : (articles sorted by number of sources associating them with CPNE7) Utopia : connect your pdf to the dynamic world of online information
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Characterization of copine VII, a new member of the copine family, and its exclusion as a candidate in sporadic breast cancers with loss of heterozygosity at 16q24.3. (PubMed id 10534407) 1 , 2 Savino M.... Savoia A. (1999) Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983) 1 Kim W....Gygi S.P. (2011) A directed protein interaction network for investigat ing intracellular signal transduction. (PubMed id 21900206) 1 Vinayagam A....Wanker E.E. (2011) Dynamics of cullin-RING ubiquitin ligase network revea led by systematic quantitative proteomics. (PubMed id 21145461) 1 Bennett E.J....Harper J.W. (2010) Defining the human deubiquitinating enzyme interactio n landscape. (PubMed id 19615732) 1 Sowa M.E....Harper J.W. (2009) Towards a proteome-scale map of the human protein-protein interaction network. (PubMed id 16189514) 1 Rual J.F....Vidal M. (2005) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002) Normalization and subtraction: two approaches to facilitate gene discovery. (PubMed id 8889548) 1 Bonaldo M.F.... Soares M.B. (1996)
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External Searches for CPNE7 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing CPNE7 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing CPNE7 gene
(According to HUGE )
About This Section --
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Specialized Databases showing CPNE7 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for CPNE7 gene: Search GeneIP for patents involving CPNE7 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor CPNE7 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 and Sirion Biotech , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript , LifeMap BioReagents , and Sirion Biotech , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from inGenious Targeting Laboratory )About This Section
Browse OriGene Antibodies Browse OriGene shRNA RFPs OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for CPNE7 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for CPNE7 OriGene Protein Over-expression Lysate for CPNE7 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for CPNE7 Browse 3'-UTR reporter clones for miRNA target validation OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for CPNE7 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for CPNE7 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for CPNE7 OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for CPNE7 OriGene Custom Protein Services for CPNE7 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat CPNE7 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing CPNE7 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat CPNE7 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat CPNE7 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat CPNE7 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat CPNE7
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Aliases for CPNE7
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