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Aliases for CPNE4 Gene

Aliases for CPNE4 Gene

  • Copine 4 2 3 5
  • Copine IV 2 3 4
  • Copine 8 2 3
  • Copine-4 3
  • Copine-8 4
  • COPN4 3
  • CPN4 3

External Ids for CPNE4 Gene

Previous GeneCards Identifiers for CPNE4 Gene

  • GC03M128164
  • GC03M131993
  • GC03M132534
  • GC03M132574
  • GC03M132573
  • GC03M132736
  • GC03M131253
  • GC03M128638

Summaries for CPNE4 Gene

Entrez Gene Summary for CPNE4 Gene

  • This gene belongs to the highly conserved copine family. It encodes a calcium-dependent, phospholipid-binding protein, which may be involved in membrane trafficking, mitogenesis and development. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2014]

GeneCards Summary for CPNE4 Gene

CPNE4 (Copine 4) is a Protein Coding gene. An important paralog of this gene is CPNE7.

UniProtKB/Swiss-Prot for CPNE4 Gene

  • Probable calcium-dependent phospholipid-binding protein that may play a role in calcium-mediated intracellular processes.

Gene Wiki entry for CPNE4 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CPNE4 Gene

Genomics for CPNE4 Gene

Regulatory Elements for CPNE4 Gene

Enhancers for CPNE4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F132034 1.2 Ensembl ENCODE 11.4 +250.6 250572 0.9 WRNIP1 ARID4B SIN3A DMAP1 ZNF48 ZNF2 ZNF143 SP3 SP5 MXD4 CPNE4 GC03P132040 MIR5704
GH03F132282 1 Ensembl ENCODE 9.4 +0.8 814 3.5 CTCF HINFP MAX FEZF1 GATA2 HNF4G MAFK STAT1 ZNF740 USF2 CPNE4 ACPP RPL7P16
GH03F131902 0.6 ENCODE 14.5 +381.5 381537 2.2 TEAD1 BHLHE40 CEBPB REST TEAD3 JUND CEBPA TCF7 FOS CPNE4 ENSG00000248468 MIR5704 LOC105374113
GH03F131797 1.1 FANTOM5 Ensembl ENCODE 7.7 +488.8 488847 0.6 TBL1XR1 SMARCA4 MTA2 IKZF1 NBN EBF1 EP300 CPNE4 LOC105374113 ENSG00000251447
GH03F132288 0.9 Ensembl ENCODE 8.6 -4.9 -4910 3.1 CEBPB MAX FEZF1 ZFHX2 SMARCA4 POLR2A GLIS1 MYC ACPP CPNE4
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CPNE4 on UCSC Golden Path with GeneCards custom track

Genomic Location for CPNE4 Gene

Chromosome:
3
Start:
131,533,555 bp from pter
End:
132,285,547 bp from pter
Size:
751,993 bases
Orientation:
Minus strand

Genomic View for CPNE4 Gene

Genes around CPNE4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CPNE4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CPNE4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CPNE4 Gene

Proteins for CPNE4 Gene

  • Protein details for CPNE4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96A23-CPNE4_HUMAN
    Recommended name:
    Copine-4
    Protein Accession:
    Q96A23
    Secondary Accessions:
    • D3DNC5
    • Q8TEX1

    Protein attributes for CPNE4 Gene

    Size:
    557 amino acids
    Molecular mass:
    62395 Da
    Quaternary structure:
    • Interacts (via VWFA domain) with ACTB, BCOR, BICD2, CCDC22, CDC42BPB, CEP162, MYCBP2, NONO, PDCD6, PITPNM2, RDX, SKIL, SKT, SPTBN1, UBE2O and WTAP (PubMed:12522145).

    Alternative splice isoforms for CPNE4 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CPNE4 Gene

Post-translational modifications for CPNE4 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for CPNE4 Gene

Domains & Families for CPNE4 Gene

Gene Families for CPNE4 Gene

Protein Domains for CPNE4 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for CPNE4 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96A23

UniProtKB/Swiss-Prot:

CPNE4_HUMAN :
  • Contains 2 C2 domains.
  • Belongs to the copine family.
Domain:
  • Contains 2 C2 domains.
  • Contains 1 VWFA domain.
Family:
  • Belongs to the copine family.
genes like me logo Genes that share domains with CPNE4: view

Function for CPNE4 Gene

Molecular function for CPNE4 Gene

UniProtKB/Swiss-Prot Function:
Probable calcium-dependent phospholipid-binding protein that may play a role in calcium-mediated intracellular processes.

Gene Ontology (GO) - Molecular Function for CPNE4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 12522145
genes like me logo Genes that share ontologies with CPNE4: view
genes like me logo Genes that share phenotypes with CPNE4: view

Animal Model Products

miRNA for CPNE4 Gene

miRTarBase miRNAs that target CPNE4

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CPNE4 Gene

Localization for CPNE4 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CPNE4 gene
Compartment Confidence
extracellular 5
cytosol 4
nucleus 3

Gene Ontology (GO) - Cellular Components for CPNE4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0070062 extracellular exosome IDA 23533145
genes like me logo Genes that share ontologies with CPNE4: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for CPNE4 Gene

Pathways & Interactions for CPNE4 Gene

SuperPathways for CPNE4 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CPNE4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CPNE4 Gene

Drugs & Compounds for CPNE4 Gene

(1) Drugs for CPNE4 Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
calcium Nutra 0
genes like me logo Genes that share compounds with CPNE4: view

Transcripts for CPNE4 Gene

Unigene Clusters for CPNE4 Gene

Copine IV:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CPNE4 Gene

ExUns: 1 ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15a · 15b ^ 16
SP1: -
SP2:
SP3: -

Relevant External Links for CPNE4 Gene

GeneLoc Exon Structure for
CPNE4
ECgene alternative splicing isoforms for
CPNE4

Expression for CPNE4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CPNE4 Gene

mRNA differential expression in normal tissues according to GTEx for CPNE4 Gene

This gene is overexpressed in Prostate (x7.6), Brain - Frontal Cortex (BA9) (x6.1), Brain - Hippocampus (x6.0), Brain - Anterior cingulate cortex (BA24) (x5.9), Brain - Cortex (x5.1), and Brain - Amygdala (x4.1).

Protein differential expression in normal tissues from HIPED for CPNE4 Gene

This gene is overexpressed in Fetal Brain (20.6), Brain (20.5), Frontal cortex (11.5), and Heart (7.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for CPNE4 Gene



Protein tissue co-expression partners for CPNE4 Gene

NURSA nuclear receptor signaling pathways regulating expression of CPNE4 Gene:

CPNE4

SOURCE GeneReport for Unigene cluster for CPNE4 Gene:

Hs.199877

mRNA Expression by UniProt/SwissProt for CPNE4 Gene:

Q96A23-CPNE4_HUMAN
Tissue specificity: Widely expressed (PubMed:12670487, PubMed:12949241). Expressed strongly in the brain, heart and prostate (PubMed:12670487, PubMed:12949241). Expressed strongly in peripheral blood leukocytes (PubMed:12949241).
genes like me logo Genes that share expression patterns with CPNE4: view

Primer Products

Orthologs for CPNE4 Gene

This gene was present in the common ancestor of animals.

Orthologs for CPNE4 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia CPNE4 35
  • 100 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia CPNE4 34 35
  • 99.88 (n)
oppossum
(Monodelphis domestica)
Mammalia CPNE4 35
  • 99 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CPNE4 35
  • 97 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CPNE4 34 35
  • 94.09 (n)
mouse
(Mus musculus)
Mammalia Cpne4 34 16 35
  • 91.26 (n)
rat
(Rattus norvegicus)
Mammalia Cpne4 34
  • 90.37 (n)
chicken
(Gallus gallus)
Aves CPNE4 34 35
  • 86.37 (n)
lizard
(Anolis carolinensis)
Reptilia CPNE4 35
  • 96 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia cpne4 34
  • 81.01 (n)
zebrafish
(Danio rerio)
Actinopterygii CPNE4 (1 of 2) 35
  • 87 (a)
OneToMany
cpne4 34 35
  • 78.54 (n)
worm
(Caenorhabditis elegans)
Secernentea gem-4 35
  • 35 (a)
ManyToMany
nra-1 35
  • 34 (a)
ManyToMany
cpna-5 35
  • 21 (a)
ManyToMany
cpna-4 35
  • 20 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 57 (a)
OneToMany
Species where no ortholog for CPNE4 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for CPNE4 Gene

ENSEMBL:
Gene Tree for CPNE4 (if available)
TreeFam:
Gene Tree for CPNE4 (if available)

Paralogs for CPNE4 Gene

Paralogs for CPNE4 Gene

(9) SIMAP similar genes for CPNE4 Gene using alignment to 5 proteins:

Pseudogenes.org Pseudogenes for CPNE4 Gene

genes like me logo Genes that share paralogs with CPNE4: view

Variants for CPNE4 Gene

Sequence variations from dbSNP and Humsavar for CPNE4 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000910 -- 131,604,298(+) GGAGG(A/G)AAGAT intron-variant
rs10049465 -- 132,259,588(+) aatgg(A/G)ctacc intron-variant
rs1005996 -- 131,866,293(-) GCTCC(A/G)GAATT intron-variant, nc-transcript-variant
rs1010899 -- 132,173,502(+) GAGGA(A/G)CAGAC intron-variant
rs1010900 -- 132,173,595(+) TACTG(C/T)AGAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CPNE4 Gene

Variant ID Type Subtype PubMed ID
dgv2599n106 CNV deletion 24896259
dgv2600n106 CNV deletion 24896259
dgv2601n106 CNV deletion 24896259
dgv2602n106 CNV deletion 24896259
dgv302e215 CNV deletion 23714750
dgv825n67 CNV loss 20364138
dgv8591n54 CNV loss 21841781
dgv8592n54 CNV gain 21841781
nsv956831 CNV deletion 24416366
nsv829727 CNV gain+loss 17160897
nsv829725 CNV gain 17160897
nsv829724 CNV gain 17160897
nsv822255 CNV loss 20364138
nsv819184 CNV loss 19587683
nsv591771 CNV loss 21841781
nsv591770 CNV loss 21841781
nsv591769 CNV gain 21841781
nsv591756 CNV gain 21841781
nsv591752 CNV loss 21841781
nsv591742 CNV loss 21841781
nsv591730 CNV gain+loss 21841781
nsv591727 CNV gain 21841781
nsv591725 CNV loss 21841781
nsv591724 CNV loss 21841781
nsv527967 CNV loss 19592680
nsv517016 CNV loss 19592680
nsv516494 CNV loss 19592680
nsv514166 CNV loss 21397061
nsv513073 CNV loss 21212237
nsv512813 CNV insertion 21212237
nsv511224 CNV loss 21212237
nsv508955 CNV insertion 20534489
nsv508244 CNV deletion 20534489
nsv499013 CNV loss 21111241
nsv437883 CNV loss 16468122
nsv433376 CNV loss 18776910
nsv4009 CNV deletion 18451855
nsv4008 CNV insertion 18451855
nsv4007 CNV deletion 18451855
nsv1160984 CNV duplication 26073780
nsv1152356 CNV deletion 26484159
nsv1149526 CNV deletion 26484159
nsv1143063 CNV tandem duplication 24896259
nsv1139159 CNV deletion 24896259
nsv1139156 CNV deletion 24896259
nsv1139155 CNV deletion 24896259
nsv1127994 CNV deletion 24896259
nsv1074624 CNV deletion 25765185
nsv10325 CNV loss 18304495
nsv1006656 CNV gain 25217958
nsv1002408 CNV loss 25217958
nsv1000282 CNV loss 25217958
esv8024 CNV loss 19470904
esv7928 CNV loss 19470904
esv5730 CNV loss 19470904
esv3597813 CNV loss 21293372
esv3597809 CNV loss 21293372
esv3597808 CNV loss 21293372
esv3597807 CNV loss 21293372
esv3597805 CNV loss 21293372
esv3597802 CNV loss 21293372
esv3597801 CNV loss 21293372
esv3597799 CNV gain 21293372
esv3597797 CNV loss 21293372
esv3597796 CNV loss 21293372
esv3597793 CNV loss 21293372
esv3569005 CNV loss 25503493
esv3569004 CNV loss 25503493
esv3562551 CNV deletion 23714750
esv3562548 CNV deletion 23714750
esv3562545 CNV deletion 23714750
esv3426719 CNV insertion 20981092
esv2759178 CNV gain 17122850
esv275136 CNV loss 21479260
esv2725931 CNV deletion 23290073
esv2725930 CNV deletion 23290073
esv2725928 CNV deletion 23290073
esv2725927 CNV deletion 23290073
esv2725926 CNV deletion 23290073
esv2725925 CNV deletion 23290073
esv2725924 CNV deletion 23290073
esv2725923 CNV deletion 23290073
esv2725922 CNV deletion 23290073
esv2677391 CNV deletion 23128226
esv2672134 CNV deletion 23128226
esv2661746 CNV deletion 23128226
esv2658353 CNV deletion 23128226
esv2637398 CNV deletion 19546169
esv2574380 CNV deletion 19546169
esv2557143 CNV deletion 19546169
esv2514810 CNV deletion 19546169
esv2421563 CNV deletion 20811451
esv2322581 CNV deletion 18987734
esv22865 CNV loss 19812545
esv22482 CNV gain 19812545
esv22316 CNV gain 19812545
esv2040947 CNV deletion 18987734
esv2039184 CNV deletion 18987734
esv1987535 CNV deletion 18987734
esv1724962 CNV insertion 17803354
esv1088025 CNV insertion 17803354
dgv937e214 CNV loss 21293372
dgv936e214 CNV loss 21293372
dgv935e214 CNV gain 21293372
dgv886e199 CNV deletion 23128226
dgv8600n54 CNV loss 21841781
dgv8599n54 CNV loss 21841781
dgv8598n54 CNV loss 21841781
dgv8597n54 CNV gain+loss 21841781
dgv8596n54 CNV gain 21841781
dgv8595n54 CNV gain 21841781
dgv8594n54 CNV gain+loss 21841781
dgv8593n54 CNV gain 21841781

Variation tolerance for CPNE4 Gene

Residual Variation Intolerance Score: 6.77% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.66; 14.05% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CPNE4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CPNE4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CPNE4 Gene

Disorders for CPNE4 Gene

Relevant External Links for CPNE4

Genetic Association Database (GAD)
CPNE4
Human Genome Epidemiology (HuGE) Navigator
CPNE4
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CPNE4

No disorders were found for CPNE4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CPNE4 Gene

Publications for CPNE4 Gene

  1. Cloning, molecular characterization, and expression analysis of copine 8. (PMID: 12670487) Maitra R. … Lee B. (Biochem. Biophys. Res. Commun. 2003) 2 3 4 64
  2. Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women. (PMID: 21507922) Ramsuran V. … Ndung'u T. (Clin. Infect. Dis. 2011) 3 46 64
  3. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 46 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64

Products for CPNE4 Gene

Sources for CPNE4 Gene

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