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Aliases for CPNE3 Gene

Aliases for CPNE3 Gene

  • Copine 3 2 3 5
  • Copine III 2 3 4
  • CPN3 3 4
  • Copine-3 3
  • KIAA0636 4
  • PRO1071 3

External Ids for CPNE3 Gene

Previous GeneCards Identifiers for CPNE3 Gene

  • GC08P086047
  • GC08P087258
  • GC08P087483
  • GC08P087566
  • GC08P087497
  • GC08P082736
  • GC08P086485

Summaries for CPNE3 Gene

Entrez Gene Summary for CPNE3 Gene

  • Calcium-dependent membrane-binding proteins may regulate molecular events at the interface of the cell membrane and cytoplasm. This gene encodes a protein which contains two type II C2 domains in the amino-terminus and an A domain-like sequence in the carboxy-terminus. The A domain mediates interactions between integrins and extracellular ligands. [provided by RefSeq, Aug 2008]

GeneCards Summary for CPNE3 Gene

CPNE3 (Copine 3) is a Protein Coding gene. Among its related pathways are Metabolism and Glycerophospholipid biosynthesis. GO annotations related to this gene include poly(A) RNA binding and transporter activity. An important paralog of this gene is CPNE1.

UniProtKB/Swiss-Prot for CPNE3 Gene

  • Calcium-dependent phospholipid-binding protein that plays a role in ERBB2-mediated tumor cell migration in response to growth factor heregulin stimulation (PubMed:20010870).

Additional gene information for CPNE3 Gene

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CPNE3 Gene

Genomics for CPNE3 Gene

Regulatory Elements for CPNE3 Gene

Enhancers for CPNE3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08H086600 0.5 ENCODE 18.7 +87.4 87422 2 GATA3 JUND POLR2A RCOR1 NR2F2 CPNE3 RMDN1 MIOXP1 PIR57796
GH08H086507 1.1 ENCODE 7.5 -6.1 -6078 2 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZBTB7B YY1 ZNF143 ZNF207 SP3 RMDN1 WWP1 NTAN1P2 LOC105375624 CPNE3 SLC2A3P4
GH08H086513 1 ENCODE 7.8 +0.3 342 1 ARID4B SIN3A DMAP1 ZBTB7B GLIS2 ELK1 ZNF207 ATF7 SP3 MXD4 RMDN1 CPNE3 MIOXP1
GH08H086522 1 Ensembl ENCODE 7.5 +8.7 8675 1 PKNOX1 ESRRA CTBP1 ZNF316 FOSL2 FOS ATF7 RUNX3 MAFK IKZF2 RMDN1 CPNE3 MIOXP1
GH08H086483 0.7 ENCODE 7.3 -30.4 -30388 1 MAX ZNF7 GABPA YY1 SREBF1 JUND ATF3 CEBPA HNF4G ZBTB33 CPNE3 WWP1 NTAN1P2 SLC2A3P4
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CPNE3 on UCSC Golden Path with GeneCards custom track

Promoters for CPNE3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000226631 373 1201 ARID4B SIN3A DMAP1 ZBTB7B GLIS2 ELK1 ZNF207 SP3 MXD4 REST

Genomic Location for CPNE3 Gene

Chromosome:
8
Start:
86,514,427 bp from pter
End:
86,561,498 bp from pter
Size:
47,072 bases
Orientation:
Plus strand

Genomic View for CPNE3 Gene

Genes around CPNE3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CPNE3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CPNE3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CPNE3 Gene

Proteins for CPNE3 Gene

  • Protein details for CPNE3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O75131-CPNE3_HUMAN
    Recommended name:
    Copine-3
    Protein Accession:
    O75131
    Secondary Accessions:
    • A8KA47
    • Q8IYA1

    Protein attributes for CPNE3 Gene

    Size:
    537 amino acids
    Molecular mass:
    60131 Da
    Quaternary structure:
    • Monomer (PubMed:12949241). Interacts with ERBB2 (preferentially with the tyrosine phosphorylated form); this interaction occurs at the cell membrane and is increased in a growth factor heregulin-dependent manner (PubMed:20010870). Interacts with SHC1; this interaction may mediate the binding of CPNE3 with ERBB2 (PubMed:20010870). Interacts with RACK1 (PubMed:20010870).
    SequenceCaution:
    • Sequence=BAA31611.2; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for CPNE3 Gene

Post-translational modifications for CPNE3 Gene

  • Phosphorylated on serine and threonine residues (PubMed:11041869).
  • Ubiquitination at isoforms=158 and isoforms=184
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for CPNE3 Gene

Domains & Families for CPNE3 Gene

Gene Families for CPNE3 Gene

HGNC:
Human Protein Atlas (HPA):
  • Plasma proteins
  • Predicted intracellular proteins

Protein Domains for CPNE3 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for CPNE3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

O75131

UniProtKB/Swiss-Prot:

CPNE3_HUMAN :
  • Belongs to the copine family.
Family:
  • Belongs to the copine family.
genes like me logo Genes that share domains with CPNE3: view

Function for CPNE3 Gene

Molecular function for CPNE3 Gene

GENATLAS Biochemistry:
copine 3,calcium-dependent,phospholipid binding protein,potentially involved in regulating membrane trafficking,expressed in brain
UniProtKB/Swiss-Prot Function:
Calcium-dependent phospholipid-binding protein that plays a role in ERBB2-mediated tumor cell migration in response to growth factor heregulin stimulation (PubMed:20010870).

Gene Ontology (GO) - Molecular Function for CPNE3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003723 RNA binding IDA 22658674
GO:0004674 protein serine/threonine kinase activity IDA 11041869
GO:0005215 transporter activity TAS 9430674
GO:0005515 protein binding IPI 20010870
GO:0005544 calcium-dependent phospholipid binding TAS 11041869
genes like me logo Genes that share ontologies with CPNE3: view
genes like me logo Genes that share phenotypes with CPNE3: view

Animal Model Products

  • Taconic Biosciences Mouse Models for CPNE3

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for CPNE3
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CPNE3 Gene

Localization for CPNE3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CPNE3 Gene

Nucleus. Cytoplasm. Cell membrane. Cell junction. Cell junction, focal adhesion. Note=Associates to the membrane in a calcium-dependent manner (PubMed:20010870). Translocates to the cell membrane and the nucleus in a calcium- or growth factor heregulin-dependent manner (PubMed:21087455, PubMed:20010870). Colocalizes with the tyrosine phosphorylated ERBB2 form at cell membrane and focal adhesions in a calcium- or growth factor heregulin-dependent manner (PubMed:20010870). {ECO:0000269 PubMed:20010870, ECO:0000269 PubMed:21087455}.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CPNE3 gene
Compartment Confidence
plasma membrane 5
extracellular 5
mitochondrion 5
nucleus 5
cytosol 5
lysosome 4

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cytosol (3)
  • Nucleoli (3)
  • Nucleus (3)
  • Mitochondria (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for CPNE3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 20010870
GO:0005730 nucleolus IDA --
GO:0005737 cytoplasm NAS 11041869
GO:0005739 mitochondrion IDA --
GO:0005829 cytosol IDA 12949241
genes like me logo Genes that share ontologies with CPNE3: view

Pathways & Interactions for CPNE3 Gene

genes like me logo Genes that share pathways with CPNE3: view

Pathways by source for CPNE3 Gene

Interacting Proteins for CPNE3 Gene

Gene Ontology (GO) - Biological Process for CPNE3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006468 protein phosphorylation IEA --
GO:0006629 lipid metabolic process TAS 9430674
GO:0016192 vesicle-mediated transport TAS 9430674
GO:0030335 positive regulation of cell migration IMP 20010870
GO:0038128 ERBB2 signaling pathway IDA 20010870
genes like me logo Genes that share ontologies with CPNE3: view

No data available for SIGNOR curated interactions for CPNE3 Gene

Drugs & Compounds for CPNE3 Gene

(1) Drugs for CPNE3 Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
calcium Nutra 0
genes like me logo Genes that share compounds with CPNE3: view

Transcripts for CPNE3 Gene

Unigene Clusters for CPNE3 Gene

Copine III:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for CPNE3
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for CPNE3 Gene

No ASD Table

Relevant External Links for CPNE3 Gene

GeneLoc Exon Structure for
CPNE3
ECgene alternative splicing isoforms for
CPNE3

Expression for CPNE3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CPNE3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for CPNE3 Gene

This gene is overexpressed in Lymph node (7.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for CPNE3 Gene



Protein tissue co-expression partners for CPNE3 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of CPNE3 Gene:

CPNE3

SOURCE GeneReport for Unigene cluster for CPNE3 Gene:

Hs.191219

mRNA Expression by UniProt/SwissProt for CPNE3 Gene:

O75131-CPNE3_HUMAN
Tissue specificity: Expressed in breast and weakly in prostate and ovarian tissues (PubMed:20010870). Expressed in neutrophils (at protein level) (PubMed:12949241). Widely expressed (PubMed:11041869). Expressed in the brain. Expressed in neutrophil precursors from the bone marrow and peripheral blood (PubMed:12949241). Expressed in primary breast tumors and ovarian endometrioid adenocarcinoma (PubMed:20010870).

Evidence on tissue expression from TISSUES for CPNE3 Gene

  • Nervous system(4.7)
  • Liver(4.4)
  • Skin(4.3)
  • Heart(2.1)
genes like me logo Genes that share expression patterns with CPNE3: view

Primer Products

No data available for mRNA differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for CPNE3 Gene

Orthologs for CPNE3 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for CPNE3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CPNE3 33 34
  • 99.44 (n)
dog
(Canis familiaris)
Mammalia CPNE3 33 34
  • 92.87 (n)
cow
(Bos Taurus)
Mammalia CPNE3 33 34
  • 90.99 (n)
oppossum
(Monodelphis domestica)
Mammalia CPNE3 34
  • 90 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Cpne3 33 16 34
  • 89.99 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia CPNE3 34
  • 89 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Cpne3 33
  • 88.62 (n)
chicken
(Gallus gallus)
Aves CPNE3 33 34
  • 79.75 (n)
lizard
(Anolis carolinensis)
Reptilia CPNE3 34
  • 85 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia cpne3 33
  • 74.73 (n)
Str.3116 33
zebrafish
(Danio rerio)
Actinopterygii cpne3 33 34
  • 69.19 (n)
zgc55622 33
worm
(Caenorhabditis elegans)
Secernentea T12A7.1 35
  • 43 (a)
Y73F8A.19 35
  • 26 (a)
thale cress
(Arabidopsis thaliana)
eudicotyledons BON2 33
  • 50.43 (n)
rice
(Oryza sativa)
Liliopsida Os02g0521300 33
  • 49.42 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 55 (a)
ManyToMany
CSA.7161 34
  • 53 (a)
ManyToMany
-- 34
  • 45 (a)
ManyToMany
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.5235 33
Species where no ortholog for CPNE3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for CPNE3 Gene

ENSEMBL:
Gene Tree for CPNE3 (if available)
TreeFam:
Gene Tree for CPNE3 (if available)

Paralogs for CPNE3 Gene

Paralogs for CPNE3 Gene

genes like me logo Genes that share paralogs with CPNE3: view

Variants for CPNE3 Gene

Sequence variations from dbSNP and Humsavar for CPNE3 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1000034074 -- 86,545,655(+) TATTA(C/T)ACCAC intron-variant
rs1000045927 -- 86,524,396(+) TTAGG(A/G)TGACT intron-variant
rs1000146128 -- 86,530,725(+) TCACT(A/C)TTGTT intron-variant
rs1000156025 -- 86,549,338(+) GAGAG(C/T)TTAGA intron-variant
rs1000286794 -- 86,512,443(+) GCCCC(C/T)GCTAC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CPNE3 Gene

Variant ID Type Subtype PubMed ID
esv2422239 CNV duplication 17116639
esv3302897 CNV tandem duplication 20981092
esv3617911 CNV loss 21293372
nsv1023510 CNV loss 25217958

Variation tolerance for CPNE3 Gene

Residual Variation Intolerance Score: 81.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 11.13; 92.29% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CPNE3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CPNE3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CPNE3 Gene

Disorders for CPNE3 Gene

Relevant External Links for CPNE3

Genetic Association Database (GAD)
CPNE3
Human Genome Epidemiology (HuGE) Navigator
CPNE3
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CPNE3

No disorders were found for CPNE3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CPNE3 Gene

Publications for CPNE3 Gene

  1. Copines-1, -2, -3, -6 and -7 show different calcium-dependent intracellular membrane translocation and targeting. (PMID: 21087455) Perestenko PV … Jeffrey McIlhinney RA (The FEBS journal 2010) 3 4 60
  2. Copine-III interacts with ErbB2 and promotes tumor cell migration. (PMID: 20010870) Heinrich C … Hynes NE (Oncogene 2010) 3 4 60
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 60
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 60
  5. Tissue expression of copines and isolation of copines I and III from the cytosol of human neutrophils. (PMID: 12949241) Cowland JB … Lollike K (Journal of leukocyte biology 2003) 3 4 60

Products for CPNE3 Gene

Sources for CPNE3 Gene

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