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Aliases for CPEB3 Gene

Aliases for CPEB3 Gene

  • Cytoplasmic Polyadenylation Element Binding Protein 3 2 3
  • CPE-Binding Protein 3 3 4
  • KIAA0940 4 6
  • CPE-BP3 3 4
  • HCPEB-3 3 4
  • Cytoplasmic Polyadenylation Element-Binding Protein 3 3

External Ids for CPEB3 Gene

Previous GeneCards Identifiers for CPEB3 Gene

  • GC10M093939
  • GC10M093472
  • GC10M093473
  • GC10M093798
  • GC10M087437

Summaries for CPEB3 Gene

GeneCards Summary for CPEB3 Gene

CPEB3 (Cytoplasmic Polyadenylation Element Binding Protein 3) is a Protein Coding gene. GO annotations related to this gene include RNA binding and nucleotide binding. An important paralog of this gene is CPEB2.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CPEB3 Gene

Genomics for CPEB3 Gene

Regulatory Elements for CPEB3 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for CPEB3 Gene

92,046,692 bp from pter
92,291,118 bp from pter
244,427 bases
Minus strand

Genomic View for CPEB3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CPEB3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CPEB3 Gene

Proteins for CPEB3 Gene

  • Protein details for CPEB3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Cytoplasmic polyadenylation element-binding protein 3
    Protein Accession:
    Secondary Accessions:
    • Q5T389
    • Q9NQJ7
    • Q9Y2E9

    Protein attributes for CPEB3 Gene

    698 amino acids
    Molecular mass:
    76014 Da
    Quaternary structure:
    No Data Available
    • Sequence=BAA76784.2; Type=Erroneous initiation; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for CPEB3 Gene

    Alternative splice isoforms for CPEB3 Gene


neXtProt entry for CPEB3 Gene

Proteomics data for CPEB3 Gene at MOPED

Post-translational modifications for CPEB3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CPEB3 Gene

Antibody Products

No data available for DME Specific Peptides for CPEB3 Gene

Domains for CPEB3 Gene

Gene Families for CPEB3 Gene

Protein Domains for CPEB3 Gene

Graphical View of Domain Structure for InterPro Entry



  • Contains 2 RRM (RNA recognition motif) domains.
  • Belongs to the RRM CPEB family.
  • Contains 2 RRM (RNA recognition motif) domains.
  • Belongs to the RRM CPEB family.
genes like me logo Genes that share domains with CPEB3: view

Function for CPEB3 Gene

Gene Ontology (GO) - Molecular Function for CPEB3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000166 nucleotide binding IEA --
GO:0000900 translation repressor activity, nucleic acid binding ISS --
GO:0003676 nucleic acid binding --
GO:0003723 RNA binding IDA 22730302
GO:0003730 mRNA 3-UTR binding ISS --
genes like me logo Genes that share ontologies with CPEB3: view

Phenotypes for CPEB3 Gene

GenomeRNAi human phenotypes for CPEB3:
genes like me logo Genes that share phenotypes with CPEB3: view

Animal Model Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CPEB3

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for CPEB3 Gene

Localization for CPEB3 Gene

Subcellular locations from

Jensen Localization Image for CPEB3 Gene COMPARTMENTS Subcellular localization image for CPEB3 gene
Compartment Confidence
nucleus 3
cytosol 2

Gene Ontology (GO) - Cellular Components for CPEB3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 20639532
GO:0005737 cytoplasm ISS --
GO:0030014 CCR4-NOT complex IDA 21336257
GO:0030425 dendrite ISS --
GO:0043005 neuron projection ISS --
genes like me logo Genes that share ontologies with CPEB3: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for CPEB3 Gene

Pathways for CPEB3 Gene

SuperPathways for CPEB3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CPEB3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000122 negative regulation of transcription from RNA polymerase II promoter IDA 20639532
GO:0006412 translation IEA --
GO:0007616 long-term memory ISS --
GO:0017148 negative regulation of translation IDA 21336257
GO:0045727 positive regulation of translation ISS --
genes like me logo Genes that share ontologies with CPEB3: view

No data available for Pathways by source for CPEB3 Gene

Transcripts for CPEB3 Gene

Unigene Clusters for CPEB3 Gene

Cytoplasmic polyadenylation element binding protein 3:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CPEB3

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CPEB3 Gene

No ASD Table

Relevant External Links for CPEB3 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CPEB3 Gene

mRNA expression in normal human tissues for CPEB3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues for CPEB3 Gene

This gene is overexpressed in Frontal cortex (32.3), Pancreas (20.2), Spinal cord (10.1), and Retina (6.5).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for CPEB3 Gene

SOURCE GeneReport for Unigene cluster for CPEB3 Gene Hs.131683

genes like me logo Genes that share expressions with CPEB3: view

Expression partners for CPEB3 Gene

* - Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for CPEB3 Gene

Orthologs for CPEB3 Gene

This gene was present in the common ancestor of animals.

Orthologs for CPEB3 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia CPEB3 35
  • 92.78 (n)
  • 95.12 (a)
CPEB3 36
  • 98 (a)
(Canis familiaris)
Mammalia CPEB3 35
  • 93.53 (n)
  • 96.41 (a)
CPEB3 36
  • 96 (a)
(Mus musculus)
Mammalia Cpeb3 35
  • 90.84 (n)
  • 96.12 (a)
Cpeb3 16
Cpeb3 36
  • 95 (a)
(Pan troglodytes)
Mammalia CPEB3 35
  • 98.91 (n)
  • 99.02 (a)
CPEB3 36
  • 100 (a)
(Rattus norvegicus)
Mammalia Cpeb3 35
  • 90.9 (n)
  • 96.4 (a)
(Monodelphis domestica)
Mammalia CPEB3 36
  • 86 (a)
(Ornithorhynchus anatinus)
Mammalia CPEB3 36
  • 93 (a)
(Gallus gallus)
Aves CPEB3 35
  • 83.16 (n)
  • 90.47 (a)
CPEB3 36
  • 91 (a)
(Anolis carolinensis)
Reptilia CPEB3 36
  • 88 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia cpeb3 35
  • 78.27 (n)
  • 85.39 (a)
(Danio rerio)
Actinopterygii cpeb3 35
  • 74.03 (n)
  • 79.68 (a)
cpeb3 36
  • 76 (a)
fruit fly
(Drosophila melanogaster)
Insecta orb2 36
  • 44 (a)
(Caenorhabditis elegans)
Secernentea cpb-1 36
  • 33 (a)
cpb-2 36
  • 29 (a)
fog-1 36
  • 20 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 78 (a)
-- 36
  • 88 (a)
Species with no ortholog for CPEB3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for CPEB3 Gene

Gene Tree for CPEB3 (if available)
Gene Tree for CPEB3 (if available)

Paralogs for CPEB3 Gene

Paralogs for CPEB3 Gene

(5) SIMAP similar genes for CPEB3 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with CPEB3: view

Variants for CPEB3 Gene

Sequence variations from dbSNP and Humsavar for CPEB3 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
rs11186857 -- 92,211,744(+) CACTA(A/T)GTTGG intron-variant
rs11186856 -- 92,204,260(+) CTGAC(A/G)GGGGC intron-variant
rs11186855 -- 92,203,528(+) TATAT(A/T)TTTTT intron-variant
rs11186854 -- 92,203,366(+) tatat(A/G)tatat intron-variant
rs11186853 -- 92,203,364(+) tatat(A/G)tgtat intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CPEB3 Gene

Variant ID Type Subtype PubMed ID
nsv895893 CNV Gain 21882294
esv2671036 CNV Deletion 23128226
esv2664459 CNV Deletion 23128226
esv2739562 CNV Deletion 23290073

Relevant External Links for CPEB3 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CPEB3 Gene

Disorders for CPEB3 Gene

Relevant External Links for CPEB3

Genetic Association Database (GAD)
Human Genome Epidemiology (HuGE) Navigator

No disorders were found for CPEB3 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships and Genatlas for CPEB3 Gene

Publications for CPEB3 Gene

  1. Prediction of the coding sequences of unidentified human genes. XIII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 10231032) Nagase T. … Ohara O. (DNA Res. 1999) 2 3 4
  2. CPEB2, a novel putative translational regulator in mouse haploid germ cells. (PMID: 12672660) Kurihara Y. … Uesugi S. (Biol. Reprod. 2003) 2 3
  3. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P. … Rogers J. (Nature 2004) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. CPEB3 is associated with human episodic memory. (PMID: 19503753) Vogler C. … de Quervain D.J. (Front Behav Neurosci 2009) 3 48

Products for CPEB3 Gene

Sources for CPEB3 Gene

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