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Aliases for CPEB2-AS1 Gene

Subcategory (RNA class) for CPEB2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CPEB2-AS1 Gene

  • CPEB2 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for CPEB2-AS1 Gene

Summaries for CPEB2-AS1 Gene

GeneCards Summary for CPEB2-AS1 Gene

CPEB2-AS1 (CPEB2 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CPEB2-AS1 Gene

Genomics for CPEB2-AS1 Gene

Regulatory Elements for CPEB2-AS1 Gene

Enhancers for CPEB2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04F015000 1.1 ENCODE 7.5 -1.6 -1632 6.1 HDGF PKNOX1 CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 YY1 ZNF766 ZNF207 CPEB2 LINC00504 CPEB2-AS1 GC04M015093 RN7SKP170
GH04F015077 1 Ensembl ENCODE 6.9 -76.7 -76657 1.8 TBP JUN CEBPG RAD21 RFX5 YY1 RCOR1 TRIM24 TCF7L2 CHD2 CPEB2-AS1 LINC00504 RN7SKP170 GC04M015093 CPEB2
GH04F015014 0.5 Ensembl 7.1 -11.9 -11856 1.0 MTA2 SMARCA4 TBX21 CPEB2-AS1 CPEB2 GC04M015093 RN7SKP170
GH04F014994 0.8 Ensembl 0.4 +7.6 7644 0.4 PKNOX1 ATF1 JUN INSM2 ZNF324 CTBP1 RCOR1 NFE2 TRIM24 FOSL2 CPEB2-AS1 LOC105374498
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CPEB2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CPEB2-AS1 Gene

Chromosome:
4
Start:
14,909,961 bp from pter
End:
15,002,045 bp from pter
Size:
92,085 bases
Orientation:
Minus strand

Genomic View for CPEB2-AS1 Gene

Genes around CPEB2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CPEB2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CPEB2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CPEB2-AS1 Gene

Proteins for CPEB2-AS1 Gene

Post-translational modifications for CPEB2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CPEB2-AS1 Gene

Domains & Families for CPEB2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CPEB2-AS1 Gene

Function for CPEB2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CPEB2-AS1 Gene

Localization for CPEB2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CPEB2-AS1 Gene

Pathways & Interactions for CPEB2-AS1 Gene

SuperPathways for CPEB2-AS1 Gene

No Data Available

Interacting Proteins for CPEB2-AS1 Gene

Gene Ontology (GO) - Biological Process for CPEB2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CPEB2-AS1 Gene

Transcripts for CPEB2-AS1 Gene

mRNA/cDNA for CPEB2-AS1 Gene

(10) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CPEB2-AS1 Gene

No ASD Table

Relevant External Links for CPEB2-AS1 Gene

GeneLoc Exon Structure for
CPEB2-AS1
ECgene alternative splicing isoforms for
CPEB2-AS1

Expression for CPEB2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CPEB2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CPEB2-AS1 Gene

This gene is overexpressed in Testis (x30.7).
genes like me logo Genes that share expression patterns with CPEB2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CPEB2-AS1 Gene

Orthologs for CPEB2-AS1 Gene

Evolution for CPEB2-AS1 Gene

ENSEMBL:
Gene Tree for CPEB2-AS1 (if available)
TreeFam:
Gene Tree for CPEB2-AS1 (if available)

No data available for Orthologs for CPEB2-AS1 Gene

Paralogs for CPEB2-AS1 Gene

No data available for Paralogs for CPEB2-AS1 Gene

Variants for CPEB2-AS1 Gene

Sequence variations from dbSNP and Humsavar for CPEB2-AS1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs10005929 -- 14,930,015(+) AAGTT(G/T)GCAGG intron-variant
rs10007527 -- 14,935,342(+) TTTGG(G/T)GAATA intron-variant
rs10008839 -- 14,943,861(+) CCTAC(C/T)GAAGG intron-variant
rs10021661 -- 14,913,354(+) aaacc(A/G)ctatg intron-variant
rs10022899 -- 14,917,439(+) ATCCT(C/T)ATGAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CPEB2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv105e19 CNV gain 19470904
esv1009627 CNV insertion 20482838
esv1205571 CNV insertion 17803354
esv1232943 CNV deletion 17803354
esv1492264 CNV deletion 17803354
esv1516048 CNV insertion 17803354
esv2727210 CNV deletion 23290073
esv2727211 CNV deletion 23290073
esv2727212 CNV deletion 23290073
esv29275 CNV loss 19812545
esv3328411 CNV insertion 20981092
esv3360212 CNV duplication 20981092
esv3364270 CNV duplication 20981092
esv3563458 CNV deletion 23714750
esv991701 CNV insertion 20482838
nsv1073739 CNV deletion 25765185
nsv1074694 CNV deletion 25765185
nsv1128886 CNV duplication 24896259
nsv1136819 CNV deletion 24896259
nsv1153142 CNV deletion 26484159
nsv1161060 CNV deletion 26073780
nsv1161061 CNV deletion 26073780
nsv292436 CNV insertion 16902084
nsv4244 CNV insertion 18451855
nsv461280 CNV loss 19166990
nsv471837 CNV novel sequence insertion 20440878
nsv480896 CNV novel sequence insertion 20440878
nsv508998 CNV insertion 20534489
nsv508999 CNV insertion 20534489
nsv593756 CNV loss 21841781
nsv593757 CNV loss 21841781
nsv593758 CNV gain 21841781
nsv593759 CNV loss 21841781
nsv593760 CNV gain 21841781
nsv829868 CNV gain 17160897
nsv954414 CNV deletion 24416366

Relevant External Links for CPEB2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CPEB2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CPEB2-AS1 Gene

Disorders for CPEB2-AS1 Gene

Relevant External Links for CPEB2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CPEB2-AS1

No disorders were found for CPEB2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CPEB2-AS1 Gene

Publications for CPEB2-AS1 Gene

  1. Genetic influences on political ideologies: twin analyses of 19 measures of political ideologies from five democracies and genome-wide findings from three populations. (PMID: 24569950) Hatemi P.K. … Martin N.G. (Behav. Genet. 2014) 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for CPEB2-AS1 Gene

Sources for CPEB2-AS1 Gene

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