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Aliases for CPEB1-AS1 Gene

Subcategory (RNA class) for CPEB1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CPEB1-AS1 Gene

  • CPEB1 Antisense RNA 1 2 3 5

External Ids for CPEB1-AS1 Gene

Summaries for CPEB1-AS1 Gene

GeneCards Summary for CPEB1-AS1 Gene

CPEB1-AS1 (CPEB1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CPEB1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CPEB1-AS1 Gene

Genomics for CPEB1-AS1 Gene

Regulatory Elements for CPEB1-AS1 Gene

Enhancers for CPEB1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15H083010 1.1 ENCODE 11.9 +363.7 363690 2.8 HDGF ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 ZNF766 FAM103A1 C15orf40 WHAMM EFL1 ENSG00000260579 HOMER2 BTBD1 CPEB1-AS1 CPEB1 AP3B2
GH15H083276 0.4 dbSUPER 11.8 +629.0 628985 1 ZNF157 ENSG00000260579 CPEB1-AS1 CPEB1 AP3B2 LOC105370932 HDGFL3
GH15H082646 1 ENCODE 0.7 0.0 -28 1.5 ATF1 SIN3A ZNF766 GLIS2 ZNF202 SP3 NCOA1 REST ZNF592 SNIP1 WHAMM C15orf40 CSPG4P10 FAM103A1 GOLGA6L9 CPEB1-AS1 GC15P082650
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CPEB1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for CPEB1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000080234 30 801 ATF1 SIN3A ZNF766 GLIS2 SP3 NCOA1 REST ZNF592 SNIP1 SMARCA4

Genomic Locations for CPEB1-AS1 Gene

Genomic Locations for CPEB1-AS1 Gene
chr15:82,647,770-82,692,820
(GRCh38/hg38)
Size:
45,051 bases
Orientation:
Plus strand
chr15:83,316,521-83,361,572
(GRCh37/hg19)

Genomic View for CPEB1-AS1 Gene

Genes around CPEB1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CPEB1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CPEB1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CPEB1-AS1 Gene

Proteins for CPEB1-AS1 Gene

Post-translational modifications for CPEB1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CPEB1-AS1 Gene

Domains & Families for CPEB1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CPEB1-AS1 Gene

Function for CPEB1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CPEB1-AS1 Gene

Localization for CPEB1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CPEB1-AS1 Gene

Pathways & Interactions for CPEB1-AS1 Gene

SuperPathways for CPEB1-AS1 Gene

No Data Available

Interacting Proteins for CPEB1-AS1 Gene

Gene Ontology (GO) - Biological Process for CPEB1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CPEB1-AS1 Gene

Drugs & Compounds for CPEB1-AS1 Gene

No Compound Related Data Available

Transcripts for CPEB1-AS1 Gene

mRNA/cDNA for CPEB1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CPEB1-AS1 Gene

No ASD Table

Relevant External Links for CPEB1-AS1 Gene

GeneLoc Exon Structure for
CPEB1-AS1
ECgene alternative splicing isoforms for
CPEB1-AS1

Expression for CPEB1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CPEB1-AS1 Gene

genes like me logo Genes that share expression patterns with CPEB1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CPEB1-AS1 Gene

Orthologs for CPEB1-AS1 Gene

Evolution for CPEB1-AS1 Gene

ENSEMBL:
Gene Tree for CPEB1-AS1 (if available)
TreeFam:
Gene Tree for CPEB1-AS1 (if available)

No data available for Orthologs for CPEB1-AS1 Gene

Paralogs for CPEB1-AS1 Gene

No data available for Paralogs for CPEB1-AS1 Gene

Variants for CPEB1-AS1 Gene

Sequence variations from dbSNP and Humsavar for CPEB1-AS1 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1057519269 Pathogenic 82,679,729(-) CTGAA(A/G)GTGAG intron-variant, nc-transcript-variant, reference, synonymous-codon
rs1057519270 Pathogenic 82,680,174(-) GCCGG(C/G)TGAGC intron-variant, splice-donor-variant
rs1057519271 Pathogenic 82,663,149(-) GACAC(-/TCAC)AGACT intron-variant, nc-transcript-variant, reference, frameshift-variant
rs1057519272 Pathogenic 82,666,762(-) TCTTG(-/G)AGTCA intron-variant, nc-transcript-variant, reference, frameshift-variant
rs775024756 Pathogenic 82,689,223(+) TCCTC(A/G)GGCAA intron-variant, nc-transcript-variant, reference, stop-gained

Relevant External Links for CPEB1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CPEB1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CPEB1-AS1 Gene

Disorders for CPEB1-AS1 Gene

Relevant External Links for CPEB1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CPEB1-AS1

No disorders were found for CPEB1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CPEB1-AS1 Gene

Publications for CPEB1-AS1 Gene

  1. Genome-wide association study evaluating lipoprotein-associated phospholipase A2 mass and activity at baseline and after rosuvastatin therapy. (PMID: 23118302) Chu AY … Ridker PM (Circulation. Cardiovascular genetics 2012) 3 60
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60

Products for CPEB1-AS1 Gene

Sources for CPEB1-AS1 Gene

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