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Aliases for CPB2-AS1 Gene

Subcategory (RNA class) for CPB2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CPB2-AS1 Gene

  • CPB2 Antisense RNA 1 2 3 5
  • CPB2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for CPB2-AS1 Gene

Previous GeneCards Identifiers for CPB2-AS1 Gene

  • GC13P046670

Summaries for CPB2-AS1 Gene

GeneCards Summary for CPB2-AS1 Gene

CPB2-AS1 (CPB2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CPB2-AS1 Gene

Genomics for CPB2-AS1 Gene

Regulatory Elements for CPB2-AS1 Gene

Enhancers for CPB2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F046100 1 Ensembl ENCODE 21.3 +48.6 48562 1.7 PKNOX1 FEZF1 ZNF2 ZNF48 YY1 CBX5 FOS ZNF488 TSHZ1 ZNF264 CPB2-AS1 ZC3H13 ENSG00000273149 CPB2
GH13F046109 0.2 ENCODE 20.2 +57.1 57079 0.8 ELF3 TBP ATF1 MLX ARID4B DMAP1 THRB ZNF48 RAD21 RARA CPB2-AS1 ZC3H13 CPB2 ENSG00000278937
GH13F046051 1 ENCODE 9.8 -0.1 -114 2.3 PKNOX1 CREB3L1 WRNIP1 ARID4B SIN3A ZNF2 YY1 SLC30A9 ZNF143 ZNF207 RCN1P2 ESD CPB2-AS1 ZC3H13 LOC105370191
GH13F046103 0.6 FANTOM5 9 +49.8 49768 0.1 FOS FOSL2 CPB2 ZC3H13 CPB2-AS1
GH13F046061 0.5 Ensembl ENCODE 5.8 +9.4 9406 1.5 SCRT1 SCRT2 CPB2-AS1 CPB2
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around CPB2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CPB2-AS1 Gene

Chromosome:
13
Start:
46,052,806 bp from pter
End:
46,113,332 bp from pter
Size:
60,527 bases
Orientation:
Plus strand

Genomic View for CPB2-AS1 Gene

Genes around CPB2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CPB2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CPB2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CPB2-AS1 Gene

Proteins for CPB2-AS1 Gene

Post-translational modifications for CPB2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CPB2-AS1 Gene

Domains & Families for CPB2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CPB2-AS1 Gene

Function for CPB2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CPB2-AS1 Gene

Localization for CPB2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CPB2-AS1 Gene

Pathways & Interactions for CPB2-AS1 Gene

SuperPathways for CPB2-AS1 Gene

No Data Available

Interacting Proteins for CPB2-AS1 Gene

Gene Ontology (GO) - Biological Process for CPB2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CPB2-AS1 Gene

Transcripts for CPB2-AS1 Gene

mRNA/cDNA for CPB2-AS1 Gene

(4) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CPB2-AS1 Gene

CPB2 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CPB2-AS1 Gene

No ASD Table

Relevant External Links for CPB2-AS1 Gene

GeneLoc Exon Structure for
CPB2-AS1
ECgene alternative splicing isoforms for
CPB2-AS1

Expression for CPB2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CPB2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CPB2-AS1 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x7.6), Brain - Substantia nigra (x5.9), Brain - Putamen (basal ganglia) (x5.2), Brain - Amygdala (x5.1), and Brain - Hippocampus (x4.8).

SOURCE GeneReport for Unigene cluster for CPB2-AS1 Gene:

Hs.626139
genes like me logo Genes that share expression patterns with CPB2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CPB2-AS1 Gene

Orthologs for CPB2-AS1 Gene

Evolution for CPB2-AS1 Gene

ENSEMBL:
Gene Tree for CPB2-AS1 (if available)
TreeFam:
Gene Tree for CPB2-AS1 (if available)

No data available for Orthologs for CPB2-AS1 Gene

Paralogs for CPB2-AS1 Gene

No data available for Paralogs for CPB2-AS1 Gene

Variants for CPB2-AS1 Gene

Sequence variations from dbSNP and Humsavar for CPB2-AS1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs1022951 -- 46,075,319(-) AGTAA(C/T)GAATC intron-variant
rs1022952 -- 46,075,213(-) TTTCT(C/T)ACTTA intron-variant
rs1022953 -- 46,074,991(-) GAACG(A/C)GGCCA intron-variant
rs10454621 -- 46,089,603(+) ccccc(A/C)aaatt intron-variant
rs1049669 -- 46,053,542(-) TATCA(A/G)ATTAT intron-variant, upstream-variant-2KB, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for CPB2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv223e201 CNV deletion 23290073
esv1459731 CNV insertion 17803354
esv1489617 CNV insertion 17803354
esv2673081 CNV deletion 23128226
esv2675321 CNV deletion 23128226
esv3306336 CNV mobile element insertion 20981092
esv3309352 CNV mobile element insertion 20981092
esv3332050 CNV insertion 20981092
esv3340783 CNV insertion 20981092
esv3631973 CNV loss 21293372
esv3631974 CNV loss 21293372
nsv455876 CNV gain 19166990
nsv561581 CNV gain 21841781
nsv820278 CNV loss 19587683
nsv832598 CNV gain 17160897

Relevant External Links for CPB2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CPB2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CPB2-AS1 Gene

Disorders for CPB2-AS1 Gene

Relevant External Links for CPB2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CPB2-AS1

No disorders were found for CPB2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CPB2-AS1 Gene

Publications for CPB2-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for CPB2-AS1 Gene

Sources for CPB2-AS1 Gene

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