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Aliases for COX6CP1 Gene

Aliases for COX6CP1 Gene

  • Cytochrome C Oxidase Subunit 6C Pseudogene 1 2 3 5
  • Cytochrome C Oxidase Subunit VIc Pseudogene 1 2

External Ids for COX6CP1 Gene

Previous GeneCards Identifiers for COX6CP1 Gene

  • GC16U990079
  • GC16M011964
  • GC16M011905
  • GC16M011997

Summaries for COX6CP1 Gene

GeneCards Summary for COX6CP1 Gene

COX6CP1 (Cytochrome C Oxidase Subunit 6C Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for COX6CP1 Gene

Genomics for COX6CP1 Gene

Regulatory Elements for COX6CP1 Gene

Enhancers for COX6CP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F012061 1.2 Ensembl ENCODE 42.7 -158.6 -158574 2.5 TBP ZFP64 ZNF493 BRCA1 ZEB1 ZNF138 ZNF354C ZNF143 RCOR1 KLF7 LOC105371084 ENSG00000261560 HNRNPCP4 ZC3H7A COX6CP1 NPIPB2 ENSG00000261216 RSL1D1 SOCS1 ENSG00000259899
GH16F011200 1.7 FANTOM5 Ensembl ENCODE 15.8 +702.1 702144 2.9 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 FOS KLF13 MXD4 REST SOCS1 NUBP1 LOC105371084 HNRNPCP4 ENSG00000261560 RMI2 COX6CP1 ENSG00000261216 ENSG00000199668 TNP2
GH16F011098 1.7 FANTOM5 Ensembl ENCODE 15.8 +801.5 801491 8.6 HDGF PKNOX1 ARNT CREB3L1 ZFP64 ARID4B YY1 FOS KLF13 JUNB SOCS1 NUBP1 LOC105371084 ENSG00000261560 COX6CP1 HNRNPCP4 ENSG00000261216 RMI2 RSL1D1 TNP2
GH16F011608 1.8 FANTOM5 Ensembl ENCODE 13.5 +291.9 291872 8.6 PKNOX1 ARNT CREB3L1 MLX ZFP64 ARID4B DMAP1 YY1 SLC30A9 ZNF143 LITAF ENSG00000261560 TXNDC11 LOC105371084 SOCS1 HNRNPCP4 COX6CP1 ENSG00000261216 SNN ZC3H7A
GH16F010943 1.1 ENCODE 21.7 +958.4 958431 4.1 HDGF PKNOX1 CREB3L1 MLX WRNIP1 ZFP64 ARID4B SIN3A DMAP1 YY1 COX6CP1 ENSG00000261560 LOC105371084 HNRNPCP4 ENSG00000261216 TXNDC11 EMP2 SOCS1 NUBP1 ENSG00000263013
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around COX6CP1 on UCSC Golden Path with GeneCards custom track

Genomic Location for COX6CP1 Gene

Chromosome:
16
Start:
11,903,801 bp from pter
End:
11,904,193 bp from pter
Size:
393 bases
Orientation:
Minus strand

Genomic View for COX6CP1 Gene

Genes around COX6CP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
COX6CP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for COX6CP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for COX6CP1 Gene

Proteins for COX6CP1 Gene

Post-translational modifications for COX6CP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for COX6CP1 Gene

Domains & Families for COX6CP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for COX6CP1 Gene

Function for COX6CP1 Gene

Molecular function for COX6CP1 Gene

GENATLAS Biochemistry:
cytochrome c oxidase,subunit VIc,component of the complex IV,terminal enzyme complex for electron transfer,oxidative phosphorylation (OXPHOS),inner mitochondrial membrane,pseudogene 1

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for COX6CP1 Gene

Localization for COX6CP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for COX6CP1 Gene

Pathways & Interactions for COX6CP1 Gene

SuperPathways for COX6CP1 Gene

No Data Available

Interacting Proteins for COX6CP1 Gene

Gene Ontology (GO) - Biological Process for COX6CP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for COX6CP1 Gene

Transcripts for COX6CP1 Gene

mRNA/cDNA for COX6CP1 Gene

(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for COX6CP1 Gene

No ASD Table

Relevant External Links for COX6CP1 Gene

GeneLoc Exon Structure for
COX6CP1
ECgene alternative splicing isoforms for
COX6CP1

Expression for COX6CP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for COX6CP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of COX6CP1 Gene:

COX6CP1
genes like me logo Genes that share expression patterns with COX6CP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for COX6CP1 Gene

Orthologs for COX6CP1 Gene

Evolution for COX6CP1 Gene

ENSEMBL:
Gene Tree for COX6CP1 (if available)
TreeFam:
Gene Tree for COX6CP1 (if available)

No data available for Orthologs for COX6CP1 Gene

Paralogs for COX6CP1 Gene

No data available for Paralogs for COX6CP1 Gene

Variants for COX6CP1 Gene

Relevant External Links for COX6CP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
COX6CP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for COX6CP1 Gene

Disorders for COX6CP1 Gene

Relevant External Links for COX6CP1

Genetic Association Database (GAD)
COX6CP1

No disorders were found for COX6CP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for COX6CP1 Gene

Publications for COX6CP1 Gene

  1. Assignment of the human genes coding for cytochrome c oxidase subunits Va (COX5A), VIc (COX6C) and VIIc (COX7C) to chromosome bands 15q25, 8q22-->q23 and 5q14 and of three pseudogenes (COX5AP1, COX6CP1, COX7CP1) to 14q22, 16p12 and 13q14-->q21 by FISH and radiation hybrid mapping. (PMID: 10072584) Hofmann S. … Meitinger T. (Cytogenet. Cell Genet. 1998) 2 3 64
  2. Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways. (PMID: 22267201) Stolk L. … Lunetta K.L. (Nat. Genet. 2012) 46 64

Products for COX6CP1 Gene

Sources for COX6CP1 Gene

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