COX6B2 Gene
protein-coding GIFtS : 51
GCID: GC19 M055861
cytochrome c oxidase subunit VIb polypeptide 2 (testis)
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Aliasesfor COX6B2 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Cytochrome C Oxidase Subunit VIb Polypeptide 2 (Testis) 1 2 FLJ328651 CT591 2 3 Cytochrome C Oxidase Subunit 6B22 COXVIB21 2 Cytochrome C Oxidase Subunit VIb, Testes Specific2 Cancer/Testis Antigen 592 3 Cytochrome C Oxidase Subunit VIb, Testes-Specific2 Cytochrome C Oxidase Subunit VIb, Testis-Specific Isoform2 3 Cytochrome C Oxidase Subunit VIb Isoform 23 COX VIb-22 3
Export aliases for COX6B2 gene to outside databases Previous GC identifers: GC19M060553 GC19M052183
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Summariesfor COX6B2 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: CX6B2_HUMAN, Q6YFQ2 Function : Connects the two COX monomers into the physiological dimeric form (By similarity)
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Genomic Viewsfor COX6B2 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000019.9 NC_018930.1 NT_011109.16 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the COX6B2 gene promoter: ER-alpha NF-1 Pax-5 AML1a NRSF form 1 NRSF form 2 PPAR-gamma1 STAT3 PPAR-gamma2 Other transcription factors Search SABiosciences Chromatin IP Primers for COX6B2 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat COX6B2
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 19q13.42 Ensembl cytogenetic band: 19q13.42 HGNC cytogenetic band: 19q13.42 COX6B2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 19 GeneLoc Exon Structure
GeneLoc location for GC19M055861: view genomic region
(about GC identifiers )
Start:
55,860,674 bp from pter
End:
55,866,182 bp from pter
Size:
5,509 bases
Orientation:
minus strand
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Proteinsfor COX6B2 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: CX6B2_HUMAN, Q6YFQ2 (See
protein sequence )Recommended Name: Cytochrome c oxidase subunit 6B2 Size : 88 amino acids; 10529 Da
Subcellular location : Mitochondrion intermembrane space (By similarity)
Secondary accessions : Q7L1R4 Q96DL5Explore the universe of human proteins at neXtProt for COX6B2: NX_Q6YFQ2 COX6B2 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_653214.2 ENSEMBL proteins: ENSP00000467959 ENSP00000467266 ENSP00000320672 ENSP00000467128 ENSP00000465651 ENSP00000468759 Human Recombinant Protein Products: Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view) : About this table
COX6B2 for ontologies About GeneDecksing COX6B2 Antibody Products: Assay Products for COX6B2:
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Protein
Domains / Familiesfor COX6B2 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
COX6B2 for domains About GeneDecksing 1 InterPro domain/family :
Graphical View of Domain Structure for InterPro Entry Q6YFQ2 ProtoNet protein and cluster: Q6YFQ2
1 Blocks protein family : IPB003213 Cytochrome oxidase c UniProtKB/Swiss-Prot: CX6B2_HUMAN, Q6YFQ2 Similarity : Belongs to the cytochrome c oxidase subunit 6B family
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Functionfor COX6B2 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: CX6B2_HUMAN, Q6YFQ2 Function : Connects the two COX monomers into the physiological dimeric form (By similarity)
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for COX6B2 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for COX6B2 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: COX6B2 (NM_144613 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for COX6B2 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat COX6B2
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for COX6B2
Gene Ontology (GO): 1 molecular function term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0004129 cytochrome-c oxidase activity
IEA --
COX6B2 for ontologies About GeneDecksing
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Pathways & Interactionsfor COX6B2 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways   About this table See pathways by source Super-pathway contained gene-specific pathways 1 Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins. 2 Cardiac muscle contraction 3 Metabolism
Pathway sources See GeneCards unified pathways Show all pathways 5/6
Kegg Pathways (Kegg details for COX6B2) (see all 6 ):
COX6B2 for pathways About GeneDecksing Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for COX6B2 STRING Interaction
Network Preview (showing 5 interactants - click image to see 16)5/16 Interacting proteins for COX6B2 (ENSP00000320672 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 16 )About this table
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Drugs & Compoundsfor COX6B2 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for COX6B2 2 HMDB Compounds for COX6B2 About this table Search CenterWatch for drugs/clinical trials and news about COX6B2 / CX6B2
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Transcriptsfor COX6B2 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
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siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
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SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for COX6B2 gene: NM_144613.4 Unigene Cluster for COX6B2:
Cytochrome c oxidase subunit VIb polypeptide 2 (testis) Hs.550544 [show with all ESTs ] Unigene Representative Sequence: AK057427 11 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000588572 ENST00000593184 ENST00000326529 (uc002qkm.3 uc002qkn.3 uc002qko.3 uc002qkp.1 )ENST00000590900 ENST00000589879 ENST00000588586 ENST00000586191 ENST00000590549 ENST00000589467 ENST00000587357 ENST00000587854 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for COX6B2 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for COX6B2 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: COX6B2 (NM_144613 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for COX6B2 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat COX6B2
Additional cDNA sequence: AK057427.1 AY152398.1 BC100899.2 BC100900.1 BC100901.1 BC100902.1 HM370404.1
4 DOTS entries : DT.101970804 DT.95258596
DT.75139246 DT.91856314 22 AceView cDNA sequences :
BC064548 BC026123 AA878062 AK057427 NM_144613 AL834316 AW194061 BC031875 BI827979 AK128284 BG324185 BM560283 AK127979 BG717038 BG716978 BG717157 AY152398 AW236235 AW087617 BG324108 BG722806 BE063485 GeneLoc Exon Structure 5 Alternative Splicing Database (ASD) splice patterns (SP) for COX6B2 About this scheme ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9a · 9b SP1 :       -                   SP2 :       -       -   -   -   -       SP3 :       -                   SP4 :       -                   SP5 :                        
ECgene alternative splicing isoforms for COX6B2
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Expression for COX6B2 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section COX6B2 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: TAAATATATA
About this image COX6B2 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table Stem Cell Differentiation: 1 LifeMap Cell Name Category Beating cell clusters (Spontaneous differen... )Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See COX6B2 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for COX6B2 SOURCE GeneReport for Unigene cluster: Hs.550544 UniProtKB/Swiss-Prot: CX6B2_HUMAN, Q6YFQ2 Tissue specificity : Testis specific. Weak expression in thymus and heart. Expressed in cancer cell lines SABiosciences Expression via Pathway-Focused PCR Array including COX6B2 : Mitochondrial Energy Metabolism in human mouse rat
Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for COX6B2Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat COX6B2 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat COX6B2 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat COX6B2 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for COX6B2
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Orthologsfor COX6B2 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of eukaryotes.
Orthologs for COX6B2 gene from 7/21 species (see all 21 ) About this table
ENSEMBL Gene Tree for COX6B2 (if available)TreeFam Gene Tree for COX6B2 (if available)
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Paralogsfor COX6B2 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for COX6B2 gene COX6B1 2 1 SIMAP similar gene for COX6B2 using alignment to 1 protein entry: CX6B2_HUMAN :COX6B1
COX6B2 for paralogs About GeneDecksing
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Genomic Variantsfor COX6B2 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 19 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for COX6B2 (55860674 - 55866182 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 1 variation for COX6B2 1 CNV : 30085
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing COX6B2
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Disorders
/ Diseasesfor COX6B2 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
COX6B2 for disorders About GeneDecksing 2 diseases for COX6B2 : About MalaCards huntington's disease parkinson's disease Export disorders for COX6B2 gene to outside databases
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Publicationsfor COX6B2 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for COX6B2 gene integrated from 9 sources : (articles sorted by number of sources associating them with COX6B2) Utopia : connect your pdf to the dynamic world of online information
Cytochrome c oxidase of mammals contains a testes-specific isoform of subunit VIb -- the counterpart to testes-specific cytochrome c? (PubMed id 12874793) 1 , 2 , 3, 9 Huttemann M.... Grossman L.I. (2003) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965) 1 Lamesch P.... Vidal M. (2007) Identification of cancer/testis-antigen genes by massively parallel signature sequencing. (PubMed id 15905330) 2 Chen Y.-T.... Simpson A.J.G. (2005) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002) Isolation of cDNAs encoding subunit VIb of cytochrome c oxidase and steady-state levels of coxVIb mRNA in different tissues. (PubMed id 2172092) 1 Taanman J.-W.... Agsteribbe E. (1990)
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External Searches for COX6B2 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing COX6B2 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing COX6B2 gene
(According to HUGE )
About This Section --
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Specialized Databases showing COX6B2 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for COX6B2 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for COX6B2 gene: Search GeneIP for patents involving COX6B2 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor COX6B2 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
OriGene Antibodies for COX6B2 OriGene shRNA RFP for COX6B2 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for COX6B2 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for COX6B2 OriGene Protein Over-expression Lysate for COX6B2 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for COX6B2 Browse 3'-UTR reporter clones for miRNA target validation OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for COX6B2 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for COX6B2 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for COX6B2 OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for COX6B2 OriGene Custom Protein Services for COX6B2 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat COX6B2 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing COX6B2 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat COX6B2 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat COX6B2 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat COX6B2 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat COX6B2
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COX6B2 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for COX6B2
ThermoFisher Antibodies for COX6B2
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat COX6B2
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Aliases for COX6B2
Databases for COX6B2
Disorders / Diseases for COX6B2
Domains / Families for COX6B2
Drugs / Compounds for COX6B2
Expression for COX6B2
Function for COX6B2
Genomic Views for COX6B2
Intellectual Property for COX6B2
Orthologs for COX6B2
Paralogs for COX6B2
Pathways / Interactions for COX6B2
Products for COX6B2
Proteins for COX6B2
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Search Box for COX6B2
Summaries for COX6B2
Transcripts for COX6B2
Variants for COX6B2
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