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Aliases for COX6B2 Gene

Aliases for COX6B2 Gene

  • Cytochrome C Oxidase Subunit 6B2 2 3 5
  • Cancer/Testis Antigen 59 2 3 4
  • Cytochrome C Oxidase Subunit VIb Polypeptide 2 (Testis) 2 3
  • COX VIb-2 3 4
  • CT59 3 4
  • Cytochrome C Oxidase Subunit VIb, Testis-Specific Isoform 4
  • Cytochrome C Oxidase Subunit VIb, Testes Specific 2
  • Cytochrome C Oxidase Subunit VIb, Testes-Specific 3
  • Cytochrome C Oxidase Subunit VIb Isoform 2 4
  • COXVIB2 3

External Ids for COX6B2 Gene

Previous GeneCards Identifiers for COX6B2 Gene

  • GC19M060553
  • GC19M055861
  • GC19M052183

Summaries for COX6B2 Gene

GeneCards Summary for COX6B2 Gene

COX6B2 (Cytochrome C Oxidase Subunit 6B2) is a Protein Coding gene. Among its related pathways are Cardiac muscle contraction and Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins.. GO annotations related to this gene include cytochrome-c oxidase activity. An important paralog of this gene is COX6B1.

UniProtKB/Swiss-Prot for COX6B2 Gene

  • Connects the two COX monomers into the physiological dimeric form.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for COX6B2 Gene

Genomics for COX6B2 Gene

Regulatory Elements for COX6B2 Gene

Enhancers for COX6B2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F055353 0.8 ENCODE 13.1 +0.8 799 1.2 KLF1 SAP130 HIC1 GLIS2 POLR2A PATZ1 PRDM10 ZNF600 KLF8 E2F6 COX6B2 PIR52348 PIR31434
GH19F055382 1.1 ENCODE 11.6 -32.1 -32050 8.2 PKNOX1 WRNIP1 ARID4B SIN3A DMAP1 YY1 ZNF207 PAF1 ZNF263 SP3 RPL28 RFPL4AP1 RPL13P13 MIR6805 ZNF581 U2AF2 COX6B2 BRSK1 FAM71E2 SHISA7
GH19F055368 1.3 FANTOM5 ENCODE 4.2 -15.2 -15177 2.9 ZNF76 KLF17 SIN3A GLI4 ZNF48 ZNF121 GLIS2 EGR1 ZNF366 SCRT2 TMEM190 RPL28 COX6B2 IL11 NAT14 ZNF579 FAM71E2
GH19F055607 0.5 FANTOM5 1.6 -252.8 -252788 0.3 GATAD2A ESRRA POLR2A ARID4B ZNF580 DMAP1 NR2F6 TEAD3 SSC5D NAT14 TNNT1 COX6B2 ZNF865 ENSG00000276488
GH19F055405 0.8 FANTOM5 ENCODE 1.4 -52.6 -52612 3.7 PKNOX1 CREB3L1 WRNIP1 ARID4B SIN3A FEZF1 DMAP1 YY1 ZNF416 ZNF207 ENSG00000269873 NAT14 MIR6805 LOC100506374 ZNF581 U2AF2 ZNF582-AS1 ZNF580 FIZ1 RPL28
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around COX6B2 on UCSC Golden Path with GeneCards custom track

Promoters for COX6B2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001420133 614 801 KLF1 SAP130 HIC1 GLIS2 POLR2A PATZ1 PRDM10 ZNF600 KLF8 E2F6

Genomic Location for COX6B2 Gene

Chromosome:
19
Start:
55,349,306 bp from pter
End:
55,354,814 bp from pter
Size:
5,509 bases
Orientation:
Minus strand

Genomic View for COX6B2 Gene

Genes around COX6B2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
COX6B2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for COX6B2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for COX6B2 Gene

Proteins for COX6B2 Gene

  • Protein details for COX6B2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6YFQ2-CX6B2_HUMAN
    Recommended name:
    Cytochrome c oxidase subunit 6B2
    Protein Accession:
    Q6YFQ2
    Secondary Accessions:
    • Q7L1R4
    • Q96DL5

    Protein attributes for COX6B2 Gene

    Size:
    88 amino acids
    Molecular mass:
    10529 Da
    Quaternary structure:
    No Data Available

neXtProt entry for COX6B2 Gene

Post-translational modifications for COX6B2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for COX6B2 Gene

No data available for DME Specific Peptides for COX6B2 Gene

Domains & Families for COX6B2 Gene

Protein Domains for COX6B2 Gene

Suggested Antigen Peptide Sequences for COX6B2 Gene

Graphical View of Domain Structure for InterPro Entry

Q6YFQ2

UniProtKB/Swiss-Prot:

CX6B2_HUMAN :
  • Contains 1 CHCH (coiled coil-helix-coiled coil-helix) domain.
  • Belongs to the cytochrome c oxidase subunit 6B family.
Domain:
  • Contains 1 CHCH (coiled coil-helix-coiled coil-helix) domain.
Family:
  • Belongs to the cytochrome c oxidase subunit 6B family.
genes like me logo Genes that share domains with COX6B2: view

Function for COX6B2 Gene

Molecular function for COX6B2 Gene

UniProtKB/Swiss-Prot Function:
Connects the two COX monomers into the physiological dimeric form.

Gene Ontology (GO) - Molecular Function for COX6B2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004129 cytochrome-c oxidase activity IEA --
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with COX6B2: view
genes like me logo Genes that share phenotypes with COX6B2: view

Animal Model Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for COX6B2 Gene

Localization for COX6B2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for COX6B2 Gene

Mitochondrion intermembrane space.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for COX6B2 Gene COMPARTMENTS Subcellular localization image for COX6B2 gene
Compartment Confidence
mitochondrion 5
cytosol 2
nucleus 2
plasma membrane 2

Gene Ontology (GO) - Cellular Components for COX6B2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion IEA --
GO:0005758 mitochondrial intermembrane space IEA --
GO:0030061 mitochondrial crista IDA 12874793
genes like me logo Genes that share ontologies with COX6B2: view

Pathways & Interactions for COX6B2 Gene

genes like me logo Genes that share pathways with COX6B2: view

Pathways by source for COX6B2 Gene

Gene Ontology (GO) - Biological Process for COX6B2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:1902600 hydrogen ion transmembrane transport IEA --
genes like me logo Genes that share ontologies with COX6B2: view

No data available for SIGNOR curated interactions for COX6B2 Gene

Drugs & Compounds for COX6B2 Gene

(2) Drugs for COX6B2 Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Oxygen Approved, Vet_approved Pharma 0
Water Approved Pharma 0
genes like me logo Genes that share compounds with COX6B2: view

Transcripts for COX6B2 Gene

Unigene Clusters for COX6B2 Gene

Cytochrome c oxidase subunit VIb polypeptide 2 (testis):
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for COX6B2 Gene

ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9a · 9b
SP1: -
SP2: - - - - -
SP3: -
SP4: -
SP5:

Relevant External Links for COX6B2 Gene

GeneLoc Exon Structure for
COX6B2
ECgene alternative splicing isoforms for
COX6B2

Expression for COX6B2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for COX6B2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for COX6B2 Gene

This gene is overexpressed in Testis (x37.7) and Colon - Transverse (x4.6).

NURSA nuclear receptor signaling pathways regulating expression of COX6B2 Gene:

COX6B2

SOURCE GeneReport for Unigene cluster for COX6B2 Gene:

Hs.550544

mRNA Expression by UniProt/SwissProt for COX6B2 Gene:

Q6YFQ2-CX6B2_HUMAN
Tissue specificity: Testis specific. Weak expression in thymus and heart. Expressed in cancer cell lines.
genes like me logo Genes that share expression patterns with COX6B2: view

Primer Products

No data available for Protein differential expression in normal tissues , Protein expression and Protein tissue co-expression partners for COX6B2 Gene

Orthologs for COX6B2 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for COX6B2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia COX6B2 34 35
  • 99.62 (n)
cow
(Bos Taurus)
Mammalia COX6B2 34 35
  • 87.88 (n)
mouse
(Mus musculus)
Mammalia Cox6b2 34 16 35
  • 82.95 (n)
rat
(Rattus norvegicus)
Mammalia Cox6b2 34
  • 80.68 (n)
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 67 (a)
OneToMany
-- 35
  • 60 (a)
OneToMany
-- 35
  • 60 (a)
OneToMany
-- 35
  • 56 (a)
OneToMany
-- 35
  • 56 (a)
OneToMany
-- 35
  • 55 (a)
OneToMany
-- 35
  • 49 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii cox6b2 35
  • 55 (a)
ManyToMany
fruit fly
(Drosophila melanogaster)
Insecta CoVIb 35
  • 39 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea Y71H2AM.5 35
  • 23 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes COX12 35
  • 40 (a)
OneToMany
Species where no ortholog for COX6B2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for COX6B2 Gene

ENSEMBL:
Gene Tree for COX6B2 (if available)
TreeFam:
Gene Tree for COX6B2 (if available)

Paralogs for COX6B2 Gene

Paralogs for COX6B2 Gene

(1) SIMAP similar genes for COX6B2 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with COX6B2: view

Variants for COX6B2 Gene

Sequence variations from dbSNP and Humsavar for COX6B2 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs10417356 -- 55,351,494(+) AGGCC(A/G)GGAGG intron-variant
rs10422372 -- 55,355,669(+) TTGTT(C/T)ACACT intron-variant, upstream-variant-2KB
rs11084396 -- 55,354,159(+) cctgc(C/T)cctac intron-variant
rs111337138 -- 55,352,806(+) ATGGG(A/G)AAGGA intron-variant
rs111341155 -- 55,356,742(+) TTTGT(A/G)TCACC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for COX6B2 Gene

Variant ID Type Subtype PubMed ID
nsv1071551 CNV deletion 25765185
nsv470162 CNV loss 18288195
nsv516199 CNV loss 19592680
nsv953624 CNV deletion 24416366

Variation tolerance for COX6B2 Gene

Residual Variation Intolerance Score: 67.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.24; 24.90% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for COX6B2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
COX6B2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for COX6B2 Gene

Disorders for COX6B2 Gene

Relevant External Links for COX6B2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
COX6B2

No disorders were found for COX6B2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for COX6B2 Gene

Publications for COX6B2 Gene

  1. Cytochrome c oxidase of mammals contains a testes-specific isoform of subunit VIb -- the counterpart to testes-specific cytochrome c? (PMID: 12874793) Huttemann M. … Grossman L.I. (Mol. Reprod. Dev. 2003) 2 3 4 22 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  4. Phospho-tyrosine dependent protein-protein interaction network. (PMID: 25814554) Grossmann A. … Stelzl U. (Mol. Syst. Biol. 2015) 3 64
  5. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64

Products for COX6B2 Gene

Sources for COX6B2 Gene

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