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Aliases for COX6A1P2 Gene

Aliases for COX6A1P2 Gene

  • Cytochrome C Oxidase Subunit 6A1 Pseudogene 2 2 3 5
  • Cytochrome C Oxidase Subunit VIa Polypeptide 1 Pseudogene 2 2

External Ids for COX6A1P2 Gene

Previous GeneCards Identifiers for COX6A1P2 Gene

  • GC06P037121
  • GC06P037124
  • GC06P037125
  • GC06P037012
  • GC06P036730
  • GC06P037173
  • GC06P037183
  • GC06P037802
  • GC06P038424
  • GC06P039014

Summaries for COX6A1P2 Gene

GeneCards Summary for COX6A1P2 Gene

COX6A1P2 (Cytochrome C Oxidase Subunit 6A1 Pseudogene 2) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for COX6A1P2 Gene

Genomics for COX6A1P2 Gene

Regulatory Elements for COX6A1P2 Gene

Enhancers for COX6A1P2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G037101 2.1 FANTOM5 Ensembl ENCODE dbSUPER 12.3 +59.8 59764 7.2 MLX CREB3L1 FEZF1 DMAP1 YY1 SLC30A9 ZNF263 SP3 SSRP1 ZNF610 PIM1 FGD2 COX6A1P2 TBC1D22B TMEM217 RNF8 CDKN1A CMTR1 RPL12P2 GC06P041050
GH06G037082 2 FANTOM5 Ensembl ENCODE dbSUPER 12.3 +39.0 38986 2.8 CREB3L1 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 NFYC MEF2D PIM1 COX6A1P2 FGD2 MTCH1 PPIL1 TMEM217 CDKN1A TBC1D22B SRSF3 GC06P041065
GH06G037133 2.1 FANTOM5 Ensembl ENCODE dbSUPER 11.4 +93.5 93539 9.7 CREB3L1 MLX ZFP64 DMAP1 FEZF1 YY1 SLC30A9 ZNF263 SP3 NFYC PIM1 COX6A1P2 TBC1D22B FGD2 PPIL1 RAB44 C6orf89 PI16 GC06P041050
GH06G037124 2 FANTOM5 Ensembl ENCODE dbSUPER 11.6 +83.7 83656 8.6 HDGF FOXA2 PKNOX1 CREB3L1 MLX ARNT ARID4B DMAP1 FEZF1 ZNF2 CMTR1 PIM1 COX6A1P2 FGD2 MTCH1 C6orf89 RAB44 MDGA1 PPIL1 GC06P041050
GH06G037238 2 FANTOM5 Ensembl ENCODE dbSUPER 10.9 +197.9 197941 8.7 CREB3L1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC TBX21 TMEM217 CDKN1A RAB44 COX6A1P2 FGD2 TBC1D22B PIR49359
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around COX6A1P2 on UCSC Golden Path with GeneCards custom track

Promoters for COX6A1P2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000196332 170 399 ZBTB33

Genomic Location for COX6A1P2 Gene

37,044,831 bp from pter
37,045,382 bp from pter
552 bases
Plus strand

Genomic View for COX6A1P2 Gene

Genes around COX6A1P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
COX6A1P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for COX6A1P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for COX6A1P2 Gene

Proteins for COX6A1P2 Gene

Post-translational modifications for COX6A1P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for COX6A1P2 Gene

Domains & Families for COX6A1P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for COX6A1P2 Gene

Function for COX6A1P2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for COX6A1P2 Gene

Localization for COX6A1P2 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for COX6A1P2 gene
Compartment Confidence
mitochondrion 3
plasma membrane 1
extracellular 1
peroxisome 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for COX6A1P2 Gene

Pathways & Interactions for COX6A1P2 Gene

SuperPathways for COX6A1P2 Gene

No Data Available

Interacting Proteins for COX6A1P2 Gene

Gene Ontology (GO) - Biological Process for COX6A1P2 Gene


No data available for Pathways by source and SIGNOR curated interactions for COX6A1P2 Gene

Drugs & Compounds for COX6A1P2 Gene

No Compound Related Data Available

Transcripts for COX6A1P2 Gene

mRNA/cDNA for COX6A1P2 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for COX6A1P2 Gene

No ASD Table

Relevant External Links for COX6A1P2 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for COX6A1P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for COX6A1P2 Gene

Protein differential expression in normal tissues from HIPED for COX6A1P2 Gene

This gene is overexpressed in Brain (59.4) and Heart (9.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for COX6A1P2 Gene

Protein tissue co-expression partners for COX6A1P2 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of COX6A1P2 Gene:


Evidence on tissue expression from TISSUES for COX6A1P2 Gene

  • Kidney(2.1)
  • Stomach(2)
genes like me logo Genes that share expression patterns with COX6A1P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for COX6A1P2 Gene

Orthologs for COX6A1P2 Gene

This gene was present in the common ancestor of animals.

Orthologs for COX6A1P2 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia COX6A1P2 35
  • 97 (a)
(Bos Taurus)
Mammalia COX6A1 35
  • 84 (a)
-- 35
  • 83 (a)
(Mus musculus)
Mammalia Cox6a1 35
  • 79 (a)
(Canis familiaris)
Mammalia -- 35
  • 70 (a)
-- 35
  • 70 (a)
-- 35
  • 39 (a)
(Monodelphis domestica)
Mammalia -- 35
  • 61 (a)
(Gallus gallus)
Aves COX6A1 35
  • 62 (a)
(Anolis carolinensis)
Reptilia -- 35
  • 64 (a)
(Danio rerio)
Actinopterygii cox6a1 35
  • 56 (a)
nszf-e250 34
fruit fly
(Drosophila melanogaster)
Insecta levy 35
  • 45 (a)
CG30093 35
  • 43 (a)
CG14077 35
  • 14 (a)
(Caenorhabditis elegans)
Secernentea tag-174 35
  • 26 (a)
Species where no ortholog for COX6A1P2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for COX6A1P2 Gene

Gene Tree for COX6A1P2 (if available)
Gene Tree for COX6A1P2 (if available)

Paralogs for COX6A1P2 Gene

(2) SIMAP similar genes for COX6A1P2 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with COX6A1P2: view

No data available for Paralogs for COX6A1P2 Gene

Variants for COX6A1P2 Gene

Variation tolerance for COX6A1P2 Gene

Gene Damage Index Score: 2.91; 48.87% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for COX6A1P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for COX6A1P2 Gene

Disorders for COX6A1P2 Gene

No disorders were found for COX6A1P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for COX6A1P2 Gene

Publications for COX6A1P2 Gene

  1. Cloning, characterization, and chromosomal localization of human liver form cytochrome c oxidase subunit VIa related genes. (PMID: 9202413) Merante F. … Robinson B.H. (Genome 1997) 3 64
  2. Assignment of COX6A1 to 6p21 and a pseudogene (COX6A1P) to 1p31.1 by in situ hybridization and somatic cell hybrids. (PMID: 9284905) Hey Y. … Varley J.M. (Cytogenet. Cell Genet. 1997) 3 64

Products for COX6A1P2 Gene

Sources for COX6A1P2 Gene

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