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Aliases for COX16 Gene

Aliases for COX16 Gene

  • COX16 Cytochrome C Oxidase Assembly Homolog (S. Cerevisiae) 2 3
  • C14orf112 3 4
  • Cytochrome C Oxidase Assembly Protein COX16 Homolog, Mitochondrial 3
  • Chromosome 14 Open Reading Frame 112 2
  • Cytochrome C Oxidase Assembly Factor 3
  • HSPC203 3

External Ids for COX16 Gene

Previous HGNC Symbols for COX16 Gene

  • C14orf112

Previous GeneCards Identifiers for COX16 Gene

  • GC14M069863
  • GC14M069682
  • GC14M070791
  • GC14M050959

Summaries for COX16 Gene

GeneCards Summary for COX16 Gene

COX16 (COX16 Cytochrome C Oxidase Assembly Homolog (S. Cerevisiae)) is a Protein Coding gene. Diseases associated with COX16 include intrahepatic cholangiocarcinoma.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for COX16 Gene

Genomics for COX16 Gene

Regulatory Elements for COX16 Gene

Genomic Location for COX16 Gene

Start:
70,325,081 bp from pter
End:
70,359,731 bp from pter
Size:
34,651 bases
Orientation:
Minus strand

Genomic View for COX16 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for COX16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for COX16 Gene

Proteins for COX16 Gene

  • Protein details for COX16 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9P0S2-COX16_HUMAN
    Recommended name:
    Cytochrome c oxidase assembly protein COX16 homolog, mitochondrial
    Protein Accession:
    Q9P0S2
    Secondary Accessions:
    • A6NDT5
    • A8K3X8

    Protein attributes for COX16 Gene

    Size:
    106 amino acids
    Molecular mass:
    12293 Da
    Quaternary structure:
    No Data Available
    Miscellaneous:
    • No COX16 mutations have been detected in patients with cytochrome c oxidase (COX) deficiency

neXtProt entry for COX16 Gene

Proteomics data for COX16 Gene at MOPED

Post-translational modifications for COX16 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for COX16 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for COX16 Gene

Domains for COX16 Gene

Protein Domains for COX16 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for COX16 Gene

Graphical View of Domain Structure for InterPro Entry

Q9P0S2

UniProtKB/Swiss-Prot:

COX16_HUMAN :
  • Q9P0S2
Family:
  • Belongs to the COX16 family.
genes like me logo Genes that share domains with COX16: view

No data available for Gene Families for COX16 Gene

Function for COX16 Gene

Gene Ontology (GO) - Molecular Function for COX16 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
genes like me logo Genes that share ontologies with COX16: view

Phenotypes for COX16 Gene

GenomeRNAi human phenotypes for COX16:
genes like me logo Genes that share phenotypes with COX16: view

Animal Model Products

CRISPR Products

miRNA for COX16 Gene

miRTarBase miRNAs that target COX16

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for COX16

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for COX16 Gene

Localization for COX16 Gene

Subcellular locations from UniProtKB/Swiss-Prot for COX16 Gene

Mitochondrion membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for COX16 Gene COMPARTMENTS Subcellular localization image for COX16 gene
Compartment Confidence
mitochondrion 5
extracellular 3

Gene Ontology (GO) - Cellular Components for COX16 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
GO:0005739 mitochondrion --
GO:0016021 integral component of membrane IEA --
GO:0031966 mitochondrial membrane IEA --
genes like me logo Genes that share ontologies with COX16: view

Pathways for COX16 Gene

SuperPathways for COX16 Gene

No Data Available

Interacting Proteins for COX16 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000374562%0d%0a9606.ENSP00000354762%0d%0a
Selected Interacting proteins: ENSP00000374562 Q9P0S2-COX16_HUMAN for COX16 Gene via STRING I2D

Gene Ontology (GO) - Biological Process for COX16 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with COX16: view

No data available for Pathways by source for COX16 Gene

Transcripts for COX16 Gene

Unigene Clusters for COX16 Gene

COX16 cytochrome c oxidase assembly homolog (S. cerevisiae):
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for COX16

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for COX16 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5a · 5b
SP1: -
SP2:
SP3: - -

Relevant External Links for COX16 Gene

GeneLoc Exon Structure for
COX16
ECgene alternative splicing isoforms for
COX16

Expression for COX16 Gene

mRNA expression in normal human tissues for COX16 Gene

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for COX16 Gene

SOURCE GeneReport for Unigene cluster for COX16 Gene Hs.709581

genes like me logo Genes that share expressions with COX16: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for COX16 Gene

Orthologs for COX16 Gene

This gene was present in the common ancestor of animals.

Orthologs for COX16 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia COX16 35
  • 99.37 (n)
  • 99.06 (a)
SYNJ2BP 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia COX16 35
  • 85.85 (n)
  • 86.79 (a)
COX16 36
  • 88 (a)
OneToOne
dog
(Canis familiaris)
Mammalia COX16 35
  • 86.79 (n)
  • 84.91 (a)
COX16 36
  • 85 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Cox16 35
  • 85.53 (n)
  • 84.91 (a)
Cox16 16
Cox16 36
  • 85 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia COX16 36
  • 79 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia COX16 36
  • 53 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Cox16 35
  • 84.91 (n)
  • 84.91 (a)
chicken
(Gallus gallus)
Aves COX16 35
  • 58.92 (n)
  • 57.58 (a)
COX16 36
  • 50 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii cox16 35
  • 64.26 (n)
  • 67.47 (a)
cox16 36
  • 55 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta l(3)neo43 36
  • 42 (a)
OneToOne
Species with no ortholog for COX16:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for COX16 Gene

ENSEMBL:
Gene Tree for COX16 (if available)
TreeFam:
Gene Tree for COX16 (if available)

Paralogs for COX16 Gene

Pseudogenes.org Pseudogenes for COX16 Gene

genes like me logo Genes that share paralogs with COX16: view

No data available for Paralogs for COX16 Gene

Variants for COX16 Gene

Structural Variations from Database of Genomic Variants (DGV) for COX16 Gene

Variant ID Type Subtype PubMed ID
nsv902075 CNV Gain 21882294
esv2748835 CNV Deletion 23290073
esv2748836 CNV Deletion 23290073

Relevant External Links for COX16 Gene

HapMap Linkage Disequilibrium report
COX16

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for COX16 Gene

Disorders for COX16 Gene

MalaCards: The human disease database

MalaCards: The human disease database. (1) Diseases for COX16 Gene including...

Search for COX16 Gene in MalaCards »

Relevant External Links for COX16

Genetic Association Database (GAD)
COX16
Human Genome Epidemiology (HuGE) Navigator
COX16
genes like me logo Genes that share disorders with COX16: view

No data available for UniProtKB/Swiss-Prot for COX16 Gene

Publications for COX16 Gene

  1. Studies of COX16, COX19, and PET191 in human cytochrome-c oxidase deficiency. (PMID: 15596615) Tay S.K.H. … Dimauro S. (Arch. Neurol. 2004) 2 3 4
  2. Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. (PMID: 11042152) Zhang Q.-H. … Chen Z. (Genome Res. 2000) 2 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression. (PMID: 20877624) Hendrickson S.L. … O'Brien S.J. (PLoS ONE 2010) 3 48
  5. A whole genome screen for HIV restriction factors. (PMID: 22082156) Liu L. … McKnight A. (Retrovirology 2011) 3

Products for COX16 Gene

Sources for COX16 Gene

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