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Aliases for COX10-AS1 Gene

Subcategory (RNA class) for COX10-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for COX10-AS1 Gene

  • COX10 Antisense RNA 1 2 3 5
  • COX10 Antisense RNA 1 (Non-Protein Coding) 2 3
  • COX10 Antisense RNA (Non-Protein Coding) 2 3
  • COX10-AS 3
  • COX10AS 3

External Ids for COX10-AS1 Gene

Previous HGNC Symbols for COX10-AS1 Gene

  • COX10AS
  • COX10-AS

Previous GeneCards Identifiers for COX10-AS1 Gene

  • GC00U931383
  • GC17M013934

Summaries for COX10-AS1 Gene

GeneCards Summary for COX10-AS1 Gene

COX10-AS1 (COX10 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for COX10-AS1 Gene

Genomics for COX10-AS1 Gene

Regulatory Elements for COX10-AS1 Gene

Enhancers for COX10-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G013930 1.2 FANTOM5 Ensembl ENCODE 8.8 +137.9 137933 2.9 ZNF133 MAX USF2 EBF1 TBX21 ATF2 GATA3 ATF3 SMARCA4 CREB1 COX10-AS1 ENSG00000233852 HS3ST3B1 GC17P013930 GC17P013934
GH17G014672 0.8 Ensembl ENCODE 11.4 -603.6 -603642 0.7 ZNF791 CEBPA CEBPB CEBPG ENSG00000266538 COX10-AS1 LOC649873 RPS18P12 GC17P014671
GH17G014205 1 Ensembl ENCODE 6.4 -136.7 -136715 1.2 PKNOX1 NFIB SIN3A MAX RAD21 YY1 CTBP1 GATA3 FOSL2 FOS CDRT15 COX10-AS1 ENSG00000231595 ENSG00000252305
GH17G014068 1.1 ENCODE 0.7 -0.5 -545 2.9 PKNOX1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF143 KLF13 CDRT15P1 CDRT15 COX10-AS1 ENSG00000252305
GH17G014098 0.5 ENCODE 0.3 -28.9 -28924 0.2 ZHX2 CEBPG DPF2 COX10 COX10-AS1 ENSG00000252305
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around COX10-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for COX10-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000091507 -5 1801 PKNOX1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF143 KLF13

Genomic Location for COX10-AS1 Gene

Chromosome:
17
Start:
13,756,478 bp from pter
End:
14,069,495 bp from pter
Size:
313,018 bases
Orientation:
Minus strand

Genomic View for COX10-AS1 Gene

Genes around COX10-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
COX10-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for COX10-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for COX10-AS1 Gene

Proteins for COX10-AS1 Gene

Post-translational modifications for COX10-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for COX10-AS1 Gene

Domains & Families for COX10-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for COX10-AS1 Gene

Function for COX10-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for COX10-AS1 Gene

Localization for COX10-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for COX10-AS1 Gene

Pathways & Interactions for COX10-AS1 Gene

SuperPathways for COX10-AS1 Gene

No Data Available

Interacting Proteins for COX10-AS1 Gene

Gene Ontology (GO) - Biological Process for COX10-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for COX10-AS1 Gene

Drugs & Compounds for COX10-AS1 Gene

No Compound Related Data Available

Transcripts for COX10-AS1 Gene

mRNA/cDNA for COX10-AS1 Gene

(3) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for COX10-AS1 Gene

COX10 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for COX10-AS1 Gene

No ASD Table

Relevant External Links for COX10-AS1 Gene

GeneLoc Exon Structure for
COX10-AS1
ECgene alternative splicing isoforms for
COX10-AS1

Expression for COX10-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for COX10-AS1 Gene

SOURCE GeneReport for Unigene cluster for COX10-AS1 Gene:

Hs.720411
genes like me logo Genes that share expression patterns with COX10-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for COX10-AS1 Gene

Orthologs for COX10-AS1 Gene

Evolution for COX10-AS1 Gene

ENSEMBL:
Gene Tree for COX10-AS1 (if available)
TreeFam:
Gene Tree for COX10-AS1 (if available)

No data available for Orthologs for COX10-AS1 Gene

Paralogs for COX10-AS1 Gene

No data available for Paralogs for COX10-AS1 Gene

Variants for COX10-AS1 Gene

Sequence variations from dbSNP and Humsavar for COX10-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs387906383 Pathogenic 14,069,607(+) AATTA(C/T)GGCCG upstream-variant-2KB, reference, missense
rs28680987 Likely benign 14,069,497(+) TGACG(A/G)CCCGG upstream-variant-2KB, utr-variant-5-prime
rs8076787 Likely benign 14,069,638(+) TCACG(C/T)CTCCT upstream-variant-2KB, reference, synonymous-codon
rs201257809 Uncertain significance 14,069,582(+) CCCGG(A/G)GAGCG upstream-variant-2KB, utr-variant-5-prime
rs373184679 Uncertain significance 14,069,577(+) GGGAT(A/C/G)CCGGG upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for COX10-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2758675 CNV loss 17122850
esv3640012 CNV loss 21293372
esv3640013 CNV gain 21293372
nsv1055511 CNV loss 25217958
nsv1056267 CNV gain 25217958
nsv1989 CNV deletion 18451855
nsv574377 CNV gain 21841781
nsv978364 CNV duplication 23825009

Relevant External Links for COX10-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
COX10-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for COX10-AS1 Gene

Disorders for COX10-AS1 Gene

Relevant External Links for COX10-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
COX10-AS1

No disorders were found for COX10-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for COX10-AS1 Gene

Publications for COX10-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for COX10-AS1 Gene

Sources for COX10-AS1 Gene

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