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Aliases for COPG2IT1 Gene

Subcategory (RNA class) for COPG2IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for COPG2IT1 Gene

  • COPG2 Imprinted Transcript 1 (Non-Protein Coding) 2 3
  • Coatomer Protein Complex, Subunit Gamma 2, Intronic Transcript 1 2 3
  • COPG2 Antisense RNA (Non-Protein Coding) 2 3
  • Copg2 Intronic Transcript 1 2 3
  • CIT1 3 6
  • Non-Protein Coding RNA 170 2
  • DKFZP761N09121 3
  • NCRNA00170 3
  • COPG2AS 3

External Ids for COPG2IT1 Gene

Previous GeneCards Identifiers for COPG2IT1 Gene

  • GC07U990274
  • GC07Pg29562
  • GC07P129563

Summaries for COPG2IT1 Gene

GeneCards Summary for COPG2IT1 Gene

COPG2IT1 (COPG2 Imprinted Transcript 1 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for COPG2IT1 Gene

Genomics for COPG2IT1 Gene

Genomic Location for COPG2IT1 Gene

Start:
130,543,453 bp from pter
End:
130,546,900 bp from pter
Size:
3,448 bases
Orientation:
Plus strand

Genomic View for COPG2IT1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for COPG2IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for COPG2IT1 Gene

No data available for Regulatory Elements for COPG2IT1 Gene

Proteins for COPG2IT1 Gene

Post-translational modifications for COPG2IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for COPG2IT1 Gene

Domains for COPG2IT1 Gene

Gene Families for COPG2IT1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with COPG2IT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for COPG2IT1 Gene

Function for COPG2IT1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for COPG2IT1 Gene

Localization for COPG2IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for COPG2IT1 Gene

Pathways for COPG2IT1 Gene

SuperPathways for COPG2IT1 Gene

No Data Available

Interacting Proteins for COPG2IT1 Gene

Gene Ontology (GO) - Biological Process for COPG2IT1 Gene

None

No data available for Pathways by source for COPG2IT1 Gene

Transcripts for COPG2IT1 Gene

mRNA/cDNA for COPG2IT1 Gene

(3) Additional mRNA sequences :

Unigene Clusters for COPG2IT1 Gene

COPG2 imprinted transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for COPG2IT1 Gene

No ASD Table

Relevant External Links for COPG2IT1 Gene

GeneLoc Exon Structure for
COPG2IT1
ECgene alternative splicing isoforms for
COPG2IT1

Expression for COPG2IT1 Gene

mRNA expression in normal human tissues for COPG2IT1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

SOURCE GeneReport for Unigene cluster for COPG2IT1 Gene Hs.715567

genes like me logo Genes that share expressions with COPG2IT1: view

No data available for mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for COPG2IT1 Gene

Orthologs for COPG2IT1 Gene

No data available for Orthologs and Evolution for COPG2IT1 Gene

Paralogs for COPG2IT1 Gene

No data available for Paralogs for COPG2IT1 Gene

Variants for COPG2IT1 Gene

Relevant External Links for COPG2IT1 Gene

HapMap Linkage Disequilibrium report
COPG2IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for COPG2IT1 Gene

Disorders for COPG2IT1 Gene

No disorders were found for COPG2IT1 Gene.

No data available for UniProtKB/Swiss-Prot for COPG2IT1 Gene

Publications for COPG2IT1 Gene

  1. The novel gene, gamma2-COP (COPG2), in the 7q32 imprinted domain escapes genomic imprinting. (PMID: 10995575) Yamasaki K. … Kishino T. (Genomics 2000) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  3. Genomic imprinting disorders in humans: a mini-review. (PMID: 19844787) Butler M.G. (J. Assist. Reprod. Genet. 2009) 3
  4. A "double adaptor" method for improved shotgun library construction. (PMID: 8619474) Andersson B. … Gibbs R.A. (Anal. Biochem. 1996) 3
  5. Large-scale concatenation cDNA sequencing. (PMID: 9110174) Yu W. … Gibbs R.A. (Genome Res. 1997) 3

Products for COPG2IT1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate COPG2IT1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for COPG2IT1
    • Block miRNA regulation of COPG2IT1 using miScript Target Protectors

    Sources for COPG2IT1 Gene

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