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Aliases for COPG2IT1 Gene

Subcategory (RNA class) for COPG2IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for COPG2IT1 Gene

  • COPG2 Imprinted Transcript 1 (Non-Protein Coding) 2 3
  • Coatomer Protein Complex, Subunit Gamma 2, Intronic Transcript 1 2 3
  • COPG2 Antisense RNA (Non-Protein Coding) 2 3
  • Copg2 Intronic Transcript 1 2 3
  • Non-Protein Coding RNA 170 2
  • DKFZP761N09121 3
  • NCRNA00170 3
  • COPG2AS 3
  • CIT1 3

External Ids for COPG2IT1 Gene

Previous GeneCards Identifiers for COPG2IT1 Gene

  • GC07U990274
  • GC07Pg29562
  • GC07P129563

Summaries for COPG2IT1 Gene

GeneCards Summary for COPG2IT1 Gene

COPG2IT1 (COPG2 Imprinted Transcript 1 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for COPG2IT1 Gene

Genomics for COPG2IT1 Gene

Regulatory Elements for COPG2IT1 Gene

Enhancers for COPG2IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F130577 0.5 Ensembl 0.3 +33.8 33848 0.2 REST COPG2 CPA5 GC07M130603 RNA5SP246 COPG2IT1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around COPG2IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for COPG2IT1 Gene

Chromosome:
7
Start:
130,543,453 bp from pter
End:
130,546,900 bp from pter
Size:
3,448 bases
Orientation:
Plus strand

Genomic View for COPG2IT1 Gene

Genes around COPG2IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
COPG2IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for COPG2IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for COPG2IT1 Gene

Proteins for COPG2IT1 Gene

Post-translational modifications for COPG2IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for COPG2IT1 Gene

Domains & Families for COPG2IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for COPG2IT1 Gene

Function for COPG2IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for COPG2IT1 Gene

Localization for COPG2IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for COPG2IT1 Gene

Pathways & Interactions for COPG2IT1 Gene

SuperPathways for COPG2IT1 Gene

No Data Available

Interacting Proteins for COPG2IT1 Gene

Gene Ontology (GO) - Biological Process for COPG2IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for COPG2IT1 Gene

Transcripts for COPG2IT1 Gene

mRNA/cDNA for COPG2IT1 Gene

(3) Additional mRNA sequences :

Unigene Clusters for COPG2IT1 Gene

COPG2 imprinted transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for COPG2IT1 Gene

No ASD Table

Relevant External Links for COPG2IT1 Gene

GeneLoc Exon Structure for
COPG2IT1
ECgene alternative splicing isoforms for
COPG2IT1

Expression for COPG2IT1 Gene

mRNA expression in normal human tissues for COPG2IT1 Gene

NURSA nuclear receptor signaling pathways regulating expression of COPG2IT1 Gene:

COPG2IT1

SOURCE GeneReport for Unigene cluster for COPG2IT1 Gene:

Hs.715567
genes like me logo Genes that share expression patterns with COPG2IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for COPG2IT1 Gene

Orthologs for COPG2IT1 Gene

No data available for Orthologs and Evolution for COPG2IT1 Gene

Paralogs for COPG2IT1 Gene

No data available for Paralogs for COPG2IT1 Gene

Variants for COPG2IT1 Gene

Sequence variations from dbSNP and Humsavar for COPG2IT1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1127302 -- 130,546,550(+) CTAAA(G/T)AATAG intron-variant, nc-transcript-variant
rs11538696 -- 130,545,497(-) TCTTT(C/T)ACCCA intron-variant, nc-transcript-variant
rs11538697 -- 130,545,700(-) ATAAA(A/T)GTTTG intron-variant, nc-transcript-variant
rs36138814 -- 130,546,733(+) GGGCT(-/A)AAAGA intron-variant, nc-transcript-variant
rs36150530 -- 130,546,827(+) ACTTT(-/C)CCCAG intron-variant, nc-transcript-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for COPG2IT1 Gene

Variant ID Type Subtype PubMed ID
nsv831131 CNV loss 17160897
nsv831132 CNV gain+loss 17160897

Relevant External Links for COPG2IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
COPG2IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for COPG2IT1 Gene

Disorders for COPG2IT1 Gene

No disorders were found for COPG2IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for COPG2IT1 Gene

Publications for COPG2IT1 Gene

  1. The novel gene, gamma2-COP (COPG2), in the 7q32 imprinted domain escapes genomic imprinting. (PMID: 10995575) Yamasaki K. … Kishino T. (Genomics 2000) 2 3 64
  2. Genomic imprinting disorders in humans: a mini-review. (PMID: 19844787) Butler M.G. (J. Assist. Reprod. Genet. 2009) 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  4. Large-scale concatenation cDNA sequencing. (PMID: 9110174) Yu W. … Gibbs R.A. (Genome Res. 1997) 3 64
  5. A "double adaptor" method for improved shotgun library construction. (PMID: 8619474) Andersson B. … Gibbs R.A. (Anal. Biochem. 1996) 3 64

Products for COPG2IT1 Gene

Sources for COPG2IT1 Gene

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