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Aliases for COMMD4 Gene

Aliases for COMMD4 Gene

  • COMM Domain Containing 4 2 3 5

External Ids for COMMD4 Gene

Previous GeneCards Identifiers for COMMD4 Gene

  • GC15P073345
  • GC15P073415
  • GC15P075628
  • GC15P052386

Summaries for COMMD4 Gene

GeneCards Summary for COMMD4 Gene

COMMD4 (COMM Domain Containing 4) is a Protein Coding gene.

UniProtKB/Swiss-Prot for COMMD4 Gene

  • May modulate activity of cullin-RING E3 ubiquitin ligase (CRL) complexes (PubMed:21778237). Down-regulates activation of NF-kappa-B.

Gene Wiki entry for COMMD4 Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for COMMD4 Gene

Genomics for COMMD4 Gene

Regulatory Elements for COMMD4 Gene

Enhancers for COMMD4 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around COMMD4 on UCSC Golden Path with GeneCards custom track

Promoters for COMMD4 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around COMMD4 on UCSC Golden Path with GeneCards custom track

Genomic Location for COMMD4 Gene

Chromosome:
15
Start:
75,335,891 bp from pter
End:
75,343,224 bp from pter
Size:
7,334 bases
Orientation:
Plus strand

Genomic View for COMMD4 Gene

Genes around COMMD4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
COMMD4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for COMMD4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for COMMD4 Gene

Proteins for COMMD4 Gene

  • Protein details for COMMD4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H0A8-COMD4_HUMAN
    Recommended name:
    COMM domain-containing protein 4
    Protein Accession:
    Q9H0A8
    Secondary Accessions:
    • B2RBN4
    • H3BUL2
    • Q7L637
    • Q9NX43

    Protein attributes for COMMD4 Gene

    Size:
    199 amino acids
    Molecular mass:
    21764 Da
    Quaternary structure:
    • Interacts (via COMM domain) with COMMD1 (via COMM domain). Interacts with RELA, RELB, NFKB1/p105. Interacts with CCDC22, CCDC93, SCNN1B, CUL2, CUL3, CUL4A, CUL5, CUL7.

    Alternative splice isoforms for COMMD4 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for COMMD4 Gene

Proteomics data for COMMD4 Gene at MOPED

Post-translational modifications for COMMD4 Gene

  • Ubiquitination at Lys 50 and Lys 180
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for COMMD4 Gene

Domains & Families for COMMD4 Gene

Gene Families for COMMD4 Gene

Protein Domains for COMMD4 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for COMMD4 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9H0A8

UniProtKB/Swiss-Prot:

COMD4_HUMAN :
  • Contains 1 COMM domain.
Domain:
  • Contains 1 COMM domain.
genes like me logo Genes that share domains with COMMD4: view

Function for COMMD4 Gene

Molecular function for COMMD4 Gene

UniProtKB/Swiss-Prot Function:
May modulate activity of cullin-RING E3 ubiquitin ligase (CRL) complexes (PubMed:21778237). Down-regulates activation of NF-kappa-B.
genes like me logo Genes that share phenotypes with COMMD4: view

Animal Model Products

miRNA for COMMD4 Gene

miRTarBase miRNAs that target COMMD4

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for COMMD4 Gene

Localization for COMMD4 Gene

Subcellular locations from UniProtKB/Swiss-Prot for COMMD4 Gene

Cytoplasm. Nucleus.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for COMMD4 Gene COMPARTMENTS Subcellular localization image for COMMD4 gene
Compartment Confidence
nucleus 4
extracellular 2
cytosol 1

No data available for Gene Ontology (GO) - Cellular Components for COMMD4 Gene

Pathways & Interactions for COMMD4 Gene

SuperPathways for COMMD4 Gene

No Data Available

Gene Ontology (GO) - Biological Process for COMMD4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for COMMD4 Gene

Drugs & Compounds for COMMD4 Gene

No Compound Related Data Available

Transcripts for COMMD4 Gene

Unigene Clusters for COMMD4 Gene

COMM domain containing 4:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for COMMD4 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8a · 8b · 8c
SP1: -
SP2: - -
SP3:

Relevant External Links for COMMD4 Gene

GeneLoc Exon Structure for
COMMD4
ECgene alternative splicing isoforms for
COMMD4

Expression for COMMD4 Gene

mRNA expression in normal human tissues for COMMD4 Gene

Protein differential expression in normal tissues from HIPED for COMMD4 Gene

This gene is overexpressed in Bone (8.9), Peripheral blood mononuclear cells (8.7), and Lymph node (6.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for COMMD4 Gene



SOURCE GeneReport for Unigene cluster for COMMD4 Gene Hs.351327

mRNA Expression by UniProt/SwissProt for COMMD4 Gene

Q9H0A8-COMD4_HUMAN
Tissue specificity: Ubiquitous.
genes like me logo Genes that share expression patterns with COMMD4: view

Protein tissue co-expression partners for COMMD4 Gene

- Elite partner

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for COMMD4 Gene

Orthologs for COMMD4 Gene

This gene was present in the common ancestor of animals.

Orthologs for COMMD4 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia COMMD4 35
  • 87.77 (n)
  • 89.95 (a)
COMMD4 36
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia COMMD4 35
  • 91.29 (n)
  • 93.97 (a)
COMMD4 36
  • 94 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Commd4 35
  • 86.93 (n)
  • 90.95 (a)
Commd4 16
Commd4 36
  • 91 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia COMMD4 35
  • 99.83 (n)
  • 99.5 (a)
COMMD4 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Commd4 35
  • 85.88 (n)
  • 88.7 (a)
oppossum
(Monodelphis domestica)
Mammalia COMMD4 36
  • 80 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia COMMD4 36
  • 75 (a)
OneToOne
chicken
(Gallus gallus)
Aves COMMD4 35
  • 73.23 (n)
  • 73.23 (a)
COMMD4 36
  • 73 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia commd4 35
  • 67.68 (n)
  • 68.02 (a)
Str.7325 35
African clawed frog
(Xenopus laevis)
Amphibia Xl.15129 35
zebrafish
(Danio rerio)
Actinopterygii commd4 35
  • 69.03 (n)
  • 74.8 (a)
commd4 36
  • 66 (a)
OneToOne
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.9443 35
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP001207 35
  • 48.85 (n)
  • 37.57 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG34039 35
  • 45.45 (n)
  • 36.9 (a)
CG34039 36
  • 34 (a)
OneToOne
Species with no ortholog for COMMD4:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for COMMD4 Gene

ENSEMBL:
Gene Tree for COMMD4 (if available)
TreeFam:
Gene Tree for COMMD4 (if available)

Paralogs for COMMD4 Gene

Pseudogenes.org Pseudogenes for COMMD4 Gene

genes like me logo Genes that share paralogs with COMMD4: view

No data available for Paralogs for COMMD4 Gene

Variants for COMMD4 Gene

Sequence variations from dbSNP and Humsavar for COMMD4 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs6495168 -- 75,337,819(+) gtgct(C/T)aattg intron-variant
rs7166436 -- 75,338,294(+) GAGCC(A/T)GTCCC intron-variant
rs12898435 -- 75,339,952(+) CACCT(C/T)TTCCC intron-variant
rs58275326 -- 75,335,940(+) CCCCC(G/T)GCACC upstream-variant-2KB
rs58796398 -- 75,334,235(+) TATTT(-/ATT)TTATT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for COMMD4 Gene

Variant ID Type Subtype PubMed ID
esv2749894 CNV Deletion 23290073

Variation tolerance for COMMD4 Gene

Residual Variation Intolerance Score: 52.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.75; 15.89% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for COMMD4 Gene

Disorders for COMMD4 Gene

Relevant External Links for COMMD4

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
COMMD4

No disorders were found for COMMD4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for COMMD4 Gene

Publications for COMMD4 Gene

  1. COMMD proteins, a novel family of structural and functional homologs of MURR1. (PMID: 15799966) Burstein E. … Duckett C.S. (J. Biol. Chem. 2005) 2 3 4 67
  2. COMMD1 is linked to the WASH complex and regulates endosomal trafficking of the copper transporter ATP7A. (PMID: 25355947) Phillips-Krawczak C.A. … Burstein E. (Mol. Biol. Cell 2015) 3
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  4. Panorama of ancient metazoan macromolecular complexes. (PMID: 26344197) Wan C. … Emili A. (Nature 2015) 3
  5. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein M.Y. … Mann M. (Cell 2015) 3

Products for COMMD4 Gene

Sources for COMMD4 Gene

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