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Aliases for COMMD10 Gene

Aliases for COMMD10 Gene

  • COMM Domain Containing 10 2 3 5
  • COMM Domain-Containing Protein 10 3
  • PTD002 3

External Ids for COMMD10 Gene

Previous GeneCards Identifiers for COMMD10 Gene

  • GC05P115497
  • GC05P115448
  • GC05P110601

Summaries for COMMD10 Gene

GeneCards Summary for COMMD10 Gene

COMMD10 (COMM Domain Containing 10) is a Protein Coding gene.

UniProtKB/Swiss-Prot for COMMD10 Gene

  • May modulate activity of cullin-RING E3 ubiquitin ligase (CRL) complexes (PubMed:21778237). May down-regulate activation of NF-kappa-B (PubMed:15799966).

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for COMMD10 Gene

Genomics for COMMD10 Gene

Regulatory Elements for COMMD10 Gene

Enhancers for COMMD10 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F116089 1 Ensembl ENCODE 16.6 +6.6 6554 1.9 MEF2D PBX2 HMBOX1 FOS RAD21 COMMD10 ENSG00000271918 ENSG00000272265 GC05P116137
GH05F116358 0.8 Ensembl ENCODE 13.7 +276.5 276490 3.9 HDGF HDAC1 PKNOX1 ATF1 BMI1 RAD21 CBX5 ZNF143 RCOR1 CREM COMMD10 SEMA6A-AS1 ENSG00000271918 LOC101927190 ENSG00000250015
GH05F116076 1.4 FANTOM5 Ensembl ENCODE 12.5 -6.8 -6827 0.8 SRF MTA2 EGR1 IKZF1 EED NBN JUNB ETV6 TBX21 SPI1 COMMD10 LVRN ATG12 AP3S1 TMED7 ENSG00000272265 ENSG00000271918 RPS25P6
GH05F116377 1 Ensembl ENCODE 5.5 +294.8 294781 1.3 HDAC1 KLF1 PKNOX1 ZNF266 KLF17 FEZF1 ZIC2 ZNF121 ZFHX2 GLIS2 SEMA6A-AS1 COMMD10 ENSG00000271918 LOC101927190 GC05P116420
GH05F116453 1.2 Ensembl ENCODE 4.7 +371.0 370997 3.0 HDGF PKNOX1 TBL1XR1 SIN3A FEZF1 RAD21 SCRT2 ZNF143 ETV6 KLF7 SEMA6A SEMA6A-AS2 COMMD10 SEMA6A-AS1 GC05P116544
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around COMMD10 on UCSC Golden Path with GeneCards custom track

Promoters for COMMD10 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001288059 1755 2001 MLX ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF207 FOS NFYC

Genomic Location for COMMD10 Gene

Chromosome:
5
Start:
116,083,645 bp from pter
End:
116,412,762 bp from pter
Size:
329,118 bases
Orientation:
Plus strand

Genomic View for COMMD10 Gene

Genes around COMMD10 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
COMMD10 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for COMMD10 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for COMMD10 Gene

Proteins for COMMD10 Gene

  • Protein details for COMMD10 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y6G5-COMDA_HUMAN
    Recommended name:
    COMM domain-containing protein 10
    Protein Accession:
    Q9Y6G5
    Secondary Accessions:
    • D3DT07
    • Q9P077

    Protein attributes for COMMD10 Gene

    Size:
    202 amino acids
    Molecular mass:
    22966 Da
    Quaternary structure:
    • Interacts (via COMM domain) with COMMD1 (via COMM domain). Interacts with RELA, RELB, NFKB1/p105, NFKB2/p100. Interacts with CCDC22, CCDC93, SCNN1B, CUL1, CUL2, CUL3, CUL4A, CUL4B, CUL7.
    SequenceCaution:
    • Sequence=AAF28983.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for COMMD10 Gene

Post-translational modifications for COMMD10 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for COMMD10 Gene

Domains & Families for COMMD10 Gene

Gene Families for COMMD10 Gene

Protein Domains for COMMD10 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for COMMD10 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9Y6G5

UniProtKB/Swiss-Prot:

COMDA_HUMAN :
  • Contains 1 COMM domain.
Domain:
  • Contains 1 COMM domain.
genes like me logo Genes that share domains with COMMD10: view

Function for COMMD10 Gene

Molecular function for COMMD10 Gene

UniProtKB/Swiss-Prot Function:
May modulate activity of cullin-RING E3 ubiquitin ligase (CRL) complexes (PubMed:21778237). May down-regulate activation of NF-kappa-B (PubMed:15799966).

Gene Ontology (GO) - Molecular Function for COMMD10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 15799966
genes like me logo Genes that share ontologies with COMMD10: view

Phenotypes for COMMD10 Gene

genes like me logo Genes that share phenotypes with COMMD10: view

Animal Models for COMMD10 Gene

MGI Knock Outs for COMMD10:

Animal Model Products

miRNA for COMMD10 Gene

miRTarBase miRNAs that target COMMD10

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for COMMD10 Gene

Localization for COMMD10 Gene

Subcellular locations from UniProtKB/Swiss-Prot for COMMD10 Gene

Cytoplasm. Nucleus.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for COMMD10 Gene COMPARTMENTS Subcellular localization image for COMMD10 gene
Compartment Confidence
nucleus 4
cytosol 2
endoplasmic reticulum 1
mitochondrion 1

Gene Ontology (GO) - Cellular Components for COMMD10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
GO:0005737 cytoplasm IEA --
genes like me logo Genes that share ontologies with COMMD10: view

Pathways & Interactions for COMMD10 Gene

SuperPathways for COMMD10 Gene

No Data Available

Gene Ontology (GO) - Biological Process for COMMD10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with COMMD10: view

No data available for Pathways by source and SIGNOR curated interactions for COMMD10 Gene

Transcripts for COMMD10 Gene

Unigene Clusters for COMMD10 Gene

COMM domain containing 10:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for COMMD10 Gene

No ASD Table

Relevant External Links for COMMD10 Gene

GeneLoc Exon Structure for
COMMD10
ECgene alternative splicing isoforms for
COMMD10

Expression for COMMD10 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for COMMD10 Gene

Protein differential expression in normal tissues from HIPED for COMMD10 Gene

This gene is overexpressed in Bone marrow stromal cell (8.1) and Monocytes (7.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for COMMD10 Gene



Protein tissue co-expression partners for COMMD10 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of COMMD10 Gene:

COMMD10

SOURCE GeneReport for Unigene cluster for COMMD10 Gene:

Hs.483136

mRNA Expression by UniProt/SwissProt for COMMD10 Gene:

Q9Y6G5-COMDA_HUMAN
Tissue specificity: Ubiquitous.
genes like me logo Genes that share expression patterns with COMMD10: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for COMMD10 Gene

Orthologs for COMMD10 Gene

This gene was present in the common ancestor of animals.

Orthologs for COMMD10 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia COMMD10 34 35
  • 99.34 (n)
cow
(Bos Taurus)
Mammalia COMMD10 34 35
  • 92.41 (n)
dog
(Canis familiaris)
Mammalia COMMD10 34 35
  • 90.76 (n)
rat
(Rattus norvegicus)
Mammalia Commd10 34
  • 86.47 (n)
mouse
(Mus musculus)
Mammalia Commd10 34 16 35
  • 85.15 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia COMMD10 35
  • 80 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia COMMD10 35
  • 79 (a)
OneToOne
chicken
(Gallus gallus)
Aves COMMD10 34 35
  • 72.29 (n)
lizard
(Anolis carolinensis)
Reptilia COMMD10 35
  • 51 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia commd10 34
  • 74.58 (n)
Str.16149 34
African clawed frog
(Xenopus laevis)
Amphibia Xl.21108 34
zebrafish
(Danio rerio)
Actinopterygii commd10 34
  • 60.1 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG2371 35
  • 21 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea CSA.5208 35
  • 44 (a)
OneToOne
Species where no ortholog for COMMD10 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for COMMD10 Gene

ENSEMBL:
Gene Tree for COMMD10 (if available)
TreeFam:
Gene Tree for COMMD10 (if available)

Paralogs for COMMD10 Gene

No data available for Paralogs for COMMD10 Gene

Variants for COMMD10 Gene

Sequence variations from dbSNP and Humsavar for COMMD10 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1001013 -- 116,266,222(-) AAATA(C/T)TTTTC intron-variant
rs1001014 -- 116,265,803(-) CTTCT(C/G)AAATC intron-variant
rs10035646 -- 116,199,277(+) ctgtt(C/T)aggtt intron-variant
rs10035805 -- 116,195,935(+) aacag(A/T)agatg intron-variant
rs10036292 -- 116,260,174(+) AATTA(A/G)GAGAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for COMMD10 Gene

Variant ID Type Subtype PubMed ID
dgv10028n54 CNV gain 21841781
dgv10029n54 CNV loss 21841781
dgv1129e214 CNV loss 21293372
dgv1639e212 CNV loss 25503493
dgv5789n100 CNV gain 25217958
dgv5790n100 CNV loss 25217958
dgv5791n100 CNV loss 25217958
dgv5792n100 CNV loss 25217958
dgv954e201 CNV deletion 23290073
esv1348644 CNV deletion 17803354
esv2422101 CNV deletion 20811451
esv2552964 CNV insertion 19546169
esv2632290 CNV deletion 19546169
esv2665054 CNV deletion 23128226
esv2670584 CNV deletion 23128226
esv2677603 CNV deletion 23128226
esv2730631 CNV deletion 23290073
esv2730633 CNV deletion 23290073
esv2730634 CNV deletion 23290073
esv2752058 CNV loss 17911159
esv2759371 CNV loss 17122850
esv2759372 CNV loss 17122850
esv2760969 CNV loss 21179565
esv2762538 CNV loss 21179565
esv2763487 CNV gain 21179565
esv32605 CNV gain 17666407
esv33800 CNV loss 17666407
esv33867 CNV gain 17666407
esv34146 CNV loss 18971310
esv34342 CNV loss 17911159
esv34428 CNV loss 17911159
esv3570367 CNV loss 25503493
esv3570368 CNV loss 25503493
esv3606378 CNV loss 21293372
esv3606379 CNV gain 21293372
esv3606380 CNV loss 21293372
esv3606381 CNV loss 21293372
esv3606383 CNV gain 21293372
esv3606385 CNV loss 21293372
esv3606386 CNV gain 21293372
esv3606387 CNV loss 21293372
esv3606389 CNV loss 21293372
esv3606390 CNV loss 21293372
esv3606391 CNV loss 21293372
esv3606392 CNV loss 21293372
esv3606393 CNV gain 21293372
esv3606394 CNV loss 21293372
esv3606395 CNV gain 21293372
esv3606396 CNV loss 21293372
esv3606397 CNV loss 21293372
esv3606398 CNV loss 21293372
esv3890718 CNV loss 25118596
esv3890719 CNV loss 25118596
esv3890720 CNV loss 25118596
nsv1017983 CNV loss 25217958
nsv1018714 CNV loss 25217958
nsv1018738 CNV loss 25217958
nsv1021381 CNV loss 25217958
nsv1023390 CNV loss 25217958
nsv1028663 CNV loss 25217958
nsv1029334 CNV loss 25217958
nsv1029470 CNV loss 25217958
nsv1032531 CNV gain 25217958
nsv1034438 CNV loss 25217958
nsv10744 CNV loss 18304495
nsv10745 CNV loss 18304495
nsv10746 CNV loss 18304495
nsv1111302 CNV tandem duplication 24896259
nsv1123976 CNV deletion 24896259
nsv1161290 CNV deletion 26073780
nsv1161291 CNV deletion 26073780
nsv328049 CNV deletion 16902084
nsv442961 CNV loss 18776908
nsv462401 CNV loss 19166990
nsv462402 CNV loss 19166990
nsv475698 CNV novel sequence insertion 20440878
nsv4967 CNV insertion 18451855
nsv509991 OTHER sequence alteration 20534489
nsv514321 CNV loss 21397061
nsv515611 CNV gain+loss 19592680
nsv517704 CNV loss 19592680
nsv519321 CNV loss 19592680
nsv521050 CNV loss 19592680
nsv524812 CNV loss 19592680
nsv527320 CNV loss 19592680
nsv527484 CNV loss 19592680
nsv599480 CNV loss 21841781
nsv599483 CNV loss 21841781
nsv599484 CNV loss 21841781
nsv818377 CNV loss 17921354
nsv823185 CNV loss 20364138
nsv958320 CNV deletion 24416366
nsv980718 CNV duplication 23825009

Variation tolerance for COMMD10 Gene

Residual Variation Intolerance Score: 56.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.83; 73.86% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for COMMD10 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
COMMD10

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for COMMD10 Gene

Disorders for COMMD10 Gene

Relevant External Links for COMMD10

Genetic Association Database (GAD)
COMMD10
Human Genome Epidemiology (HuGE) Navigator
COMMD10
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
COMMD10

No disorders were found for COMMD10 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for COMMD10 Gene

Publications for COMMD10 Gene

  1. COMMD proteins, a novel family of structural and functional homologs of MURR1. (PMID: 15799966) Burstein E. … Duckett C.S. (J. Biol. Chem. 2005) 2 3 4 64
  2. COMMD1 is linked to the WASH complex and regulates endosomal trafficking of the copper transporter ATP7A. (PMID: 25355947) Phillips-Krawczak C.A. … Burstein E. (Mol. Biol. Cell 2015) 3 4 64
  3. CCDC22 deficiency in humans blunts activation of proinflammatory NF-I_B signaling. (PMID: 23563313) Starokadomskyy P. … Burstein E. (J. Clin. Invest. 2013) 3 4 64
  4. A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network. (PMID: 22228203) Aslibekyan S. … Arnett D.K. (Pharmacogenet. Genomics 2012) 3 46 64
  5. COMMD1 (copper metabolism MURR1 domain-containing protein 1) regulates Cullin RING ligases by preventing CAND1 (Cullin-associated Nedd8-dissociated protein 1) binding. (PMID: 21778237) Mao X. … Burstein E. (J. Biol. Chem. 2011) 3 4 64

Products for COMMD10 Gene

Sources for COMMD10 Gene

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