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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

COLEC10 Gene

protein-coding   GIFtS: 49
GCID: GC08P120007

Collectin Sub-Family Member 10 (C-Type Lectin)

  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Collectin Sub-Family Member 10 (C-Type Lectin)1 2     Collectin Liver 12
CLL12 3 5     collectin-102
Collectin Liver Protein 12 3     collectin-342
CL-342 3     CL-L13
Collectin 342     Collectin-343

External Ids:    HGNC: 22201   Entrez Gene: 105842   Ensembl: ENSG000001843747   OMIM: 6076205   UniProtKB: Q9Y6Z73   

Export aliases for COLEC10 gene to outside databases

Previous GC identifers: GC08P119066 GC08U900019 GC08P119676 GC08P120036 GC08P120148 GC08P115407


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for COLEC10 Gene:
This gene encodes a member of the C-lectin family, proteins that possess collagen-like sequences and carbohydrate
recognition domains. The other members of this family are secreted proteins and bind to carbohydrate antigens on
microorganisms facilitating their recognition and removal. This gene product is a cytosolic protein, a
characteristic that suggests that it may have different biological functions than other C-lectins. (provided by
RefSeq, Jul 2008)

GeneCards Summary for COLEC10 Gene: 
COLEC10 (collectin sub-family member 10 (C-type lectin)) is a protein-coding gene. Diseases associated with COLEC10 include hepatitis b, and hepatitis. GO annotations related to this gene include mannose binding. An important paralog of this gene is SFTPA1.

UniProtKB/Swiss-Prot: COL10_HUMAN, Q9Y6Z7
Function: Lectin that binds to various sugars: galactose > mannose = fucose > N-acetylglucosamine >
N-acetylgalactosamine




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000008.10  NT_008046.16  NC_018919.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the COLEC10 gene promoter:
         HFH-3   RP58   STAT5A   LCR-F1   FOXL1   FOXI1   POU2F1   POU2F1a   FOXJ2 (long isoform)   FOXJ2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidCOLEC10 promoter sequence
   Search SABiosciences Chromatin IP Primers for COLEC10

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat COLEC10


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 8q23-q24.1   Ensembl cytogenetic band:  8q24.12   HGNC cytogenetic band: 8q23-q24.1

COLEC10 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
COLEC10 gene location

GeneLoc information about chromosome 8         GeneLoc Exon Structure

GeneLoc location for GC08P120007:  view genomic region     (about GC identifiers)

Start:
120,007,691 bp from pter      End:
120,119,207 bp from pter
Size:
111,517 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: COL10_HUMAN, Q9Y6Z7 (See protein sequence)
Recommended Name: Collectin-10 precursor  
Size: 277 amino acids; 30705 Da
Subcellular location: Secreted. Note=According to PubMed:10224141, cytoplasmic
Secondary accessions: Q3SYH6 Q6UW19

Explore the universe of human proteins at neXtProt for COLEC10: NX_Q9Y6Z7

Explore proteomics data for COLEC10 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q9Y6Z7

  • COLEC10 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    COLEC10 Protein Expression
    REFSEQ proteins: NP_006429.2  
    ENSEMBL proteins: 
     ENSP00000332723  

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    Sino Biological Cell Lysate for COLEC10 
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    Browse Proteins at Cloud-Clone Corp. 

    Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005581collagen IEA--
    GO:0005737cytoplasm IDA10224141

    COLEC10 for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    HGNC Gene Families: 
    COLEC: Collectins

    5 InterPro protein domains:
     IPR016187 C-type_lectin_fold
     IPR018378 C-type_lectin_CS
     IPR016186 C-type_lectin-like
     IPR001304 C-type_lectin
     IPR008160 Collagen

    Graphical View of Domain Structure for InterPro Entry Q9Y6Z7

    ProtoNet protein and cluster: Q9Y6Z7

    1 Blocks protein domain: IPB008160 Collagen triple helix repeat

    UniProtKB/Swiss-Prot: COL10_HUMAN, Q9Y6Z7
    Similarity: Belongs to the COLEC10/COLEC11 family
    Similarity: Contains 1 C-type lectin domain
    Similarity: Contains 1 collagen-like domain


    COLEC10 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: COL10_HUMAN, Q9Y6Z7
    Function: Lectin that binds to various sugars: galactose > mannose = fucose > N-acetylglucosamine >
    N-acetylgalactosamine

         Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005537mannose binding IEA--
    GO:0030246carbohydrate binding ----
         
    COLEC10 for ontologies           About GeneDecksing


    Animal Models:
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section




    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for COLEC10

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for COLEC10 (COL10)

    Search CenterWatch for drugs/clinical trials and news about COLEC10 / COL10

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for COLEC10 gene: 
    NM_006438.3  

    Unigene Cluster for COLEC10:

    Collectin sub-family member 10 (C-type lectin)
    Hs.176615  [show with all ESTs]
    Unigene Representative Sequence: NM_006438
    2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000521788 ENST00000332843(uc003yoo.3)
    miRNA
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    Inhib. RNA
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      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat COLEC10

    Additional mRNA sequence: 

    AB002631.1 AK291791.1 AY359038.1 BC103815.1 BC103816.1 

    1 DOTS entry:

    DT.441628 

    14 AceView cDNA sequences:

    BX090456 AB002631 AY359038 BM010788 CB141360 NM_006438 BX496500 R97480 
    BX494095 BM009998 W00944 N74624 R29493 R97432 

    GeneLoc Exon Structure

    2 Alternative Splicing Database (ASD) splice patterns (SP) for COLEC10    About this scheme

    ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7
    SP1:                          -                     
    SP2:                                                


    ECgene alternative splicing isoforms for COLEC10

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    COLEC10 expression in normal human tissues (normalized intensities)      COLEC10 embryonic expression: see
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: TACTTTGTCT
    COLEC10 Expression
    About this image


    COLEC10 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database 
     5/33 selected tissues (see all 33) fully expand
     
     Epithelium
             cervix, uterine ; squamous epithelial cells   
     
     Testis (Reproductive System)    fully expand to see all 4 entries
             Leydig Cells Testis Interstitium
             seminal vesicle ; glandular cells   
     
     Brain (Nervous System)    fully expand to see all 4 entries
             Cerebral Cortex
     
     Uterus
             uterus, post-menopause ; glandular cells   
     
     Colon (Gastrointestinal Tract)    fully expand to see all 3 entries
             rectum ; glandular cells   

    See COLEC10 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for COLEC10

    SOURCE GeneReport for Unigene cluster: Hs.176615

    UniProtKB/Swiss-Prot: COL10_HUMAN, Q9Y6Z7
    Tissue specificity: Highly expressed in liver, placenta and adrenal gland. Moderately expressed in small
    intestine, lung, stomach and prostate. Weakly expressed in trachea and spleen

        SABiosciences Custom PCR Arrays for COLEC10
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    In Situ
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for COLEC10

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for COLEC10 gene from 3/9 species (see all 9)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Colec101 , 5 collectin sub-family member 101, 5 86.04(n)1
    88.81(a)1
      15 (21.15 cM)5
    2394471  NM_173422.31  NP_775598.21 
     544107745 
    chicken
    (Gallus gallus)
    Aves COLEC101 collectin sub-family member 10 (C-type lectin) 73.51(n)
    70.72(a)
      420281  NM_001039598.1  NP_001034687.1 
    lizard
    (Anolis carolinensis)
    Reptilia COLEC106
    Uncharacterized protein
    70(a)
    1 ↔ 1
    GL343269.1(785102-811918)


    ENSEMBL Gene Tree for COLEC10 (if available)
    TreeFam Gene Tree for COLEC10 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for COLEC10 gene
    SFTPA12  COLEC112  SFTPD2  MBL22  SFTPA22  
    1 SIMAP similar gene for COLEC10 using alignment to 1 protein entry:     COL10_HUMAN:
    COLEC11

    COLEC10 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/909 SNPs in COLEC10 are shown (see all 909)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 8 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1490925241,2
    --120077437(+) GAGCAC/TGGCTG 1 -- us2k10--------
    rs787266911,2
    C,F--120077460(+) TGTGCG/AGTGGG 1 -- us2k11Minor allele frequency- A:0.04WA 118
    rs771942981,2
    C--120077796(+) TACAAT/AAAATG 1 -- us2k14Minor allele frequency- A:0.16WA NA EA 360
    rs1437007891,2
    C--120077839(+) ACCTGC/G/TGATCC 1 -- us2k10--------
    rs733254731,2
    C--120077869(+) GGTGGA/GTGGAT 1 -- us2k13Minor allele frequency- G:0.15WA NA EA 242
    rs1454497051,2
    C--120078063(+) CTCCA-/TCCA  
            
    GCCTG
    1 -- us2k10--------
    rs2021901111,2
    C--120078094(+) CATCTA/CAAAAA 1 -- us2k10--------
    rs3743840221,2
    C--120078094(+) CATCT-/A/AA  
            
    AAAAA
    1 -- us2k10--------
    rs1906385011,2
    --120078466(+) ATGCTC/GTTCAA 1 -- us2k10--------
    rs1178634031,2
    C,F--120078525(+) ATCTTC/TCAATA 1 -- us2k11Minor allele frequency- T:0.03NA 120

    HapMap Linkage Disequilibrium report for COLEC10 (120007691 - 120119207 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 5 variations for COLEC10:    About this table     
    Variant IDTypeSubtypePubMed ID
    esv2674983CNV Deletion23128226
    esv2668821CNV Deletion23128226
    esv22200CNV Loss19812545
    essv5532CNV CNV17122850
    essv8481CNV CNV17122850

    SABiosciences Cancer Mutation PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    OMIM gene information: 607620    OMIM disorders: --

    3 diseases for COLEC10:    About MalaCards
    hepatitis b    hepatitis    prostatitis


    COLEC10 for disorders           About GeneDecksing

    Genetic Association Database (GAD): COLEC10
    Human Genome Epidemiology (HuGE) Navigator: COLEC10 (1 document)

    Export disorders for COLEC10 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for COLEC10 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with COLEC10)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Molecular cloning of a novel human collectin from liver (CL-L1). (PubMed id 10224141)1, 2, 3, 9 Ohtani K.... Wakamiya N. (1999)
    2. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309)1, 2 Clark H.F.... Gray A.M. (2003)
    3. Molecular cloning of mouse collectin liver 1. (PubMed id 12450124)1, 9 Kawai T....Wakamiya N. (2002)
    4. New genetic associations detected in a host response study to hepatitis B vaccine. (PubMed id 20237496)1 Davila S....Seielstad M. (2010)
    5. Genome-wide association with diabetes-related traits in the Framingham Heart Study. (PubMed id 17903298)4 Meigs J.B....Dupuis J. (2007)
    6. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
    7. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)2 Ota T.... Sugano S. (2004)
    8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
    9. Identification and characterization of a novel human collectin CL- K1. (PubMed id 17179669)9 Keshi H.... Wakamiya N. (2006)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 10584 HGNC: 2220 AceView: COLEC10 Ensembl:ENSG00000184374 euGenes: HUgn10584
    ECgene: COLEC10 H-InvDB: COLEC10

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for COLEC10 Pharmacogenomics, SNPs, Pathways
    Functional Glycomics Gateway - Glycan Bindinghttp://www.functionalglycomics.org/glycomics/GBPServlet?&operationType=view&cbpId=cbp_hum_Ctlect_226

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for COLEC10 gene:
    Search GeneIP for patents involving COLEC10

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
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    About This Section

     
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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