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Aliases for COL5A1-AS1 Gene

Subcategory (RNA class) for COL5A1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for COL5A1-AS1 Gene

  • COL5A1 Antisense RNA 1 2 3 4 5
  • COL5A1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • C9orf104 3 4
  • Chromosome 9 Open Reading Frame 104 2
  • COL5A1 Antisense Gene Protein 1 4
  • BA54A22.4 3

External Ids for COL5A1-AS1 Gene

Previous HGNC Symbols for COL5A1-AS1 Gene

  • C9orf104

Previous GeneCards Identifiers for COL5A1-AS1 Gene

  • GC09M137542

Summaries for COL5A1-AS1 Gene

GeneCards Summary for COL5A1-AS1 Gene

COL5A1-AS1 (COL5A1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for COL5A1-AS1 Gene

Genomics for COL5A1-AS1 Gene

Regulatory Elements for COL5A1-AS1 Gene

Enhancers for COL5A1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09F134624 1.2 Ensembl ENCODE 22.8 +27.1 27146 3.7 TBP PKNOX1 KLF17 RAD21 ZNF366 SMARCC2 RCOR1 ZNF548 FOS DEK COL5A1-AS1 LINC00094 COL5A1 GC09P134561
GH09F134337 1.8 FANTOM5 Ensembl ENCODE 11.3 +310.5 310529 9.4 HDGF PKNOX1 ARNT MLX CREB3L1 ARID4B SIN3A DMAP1 SLC30A9 CBX5 RNU6ATAC ARF4P1 MIR3689B RXRA COL5A1-AS1 MIR4669
GH09F133886 1.6 FANTOM5 Ensembl ENCODE 11.3 +764.3 764344 4.6 HDGF PKNOX1 ATF1 ARNT MLX ARID4B GLI4 DMAP1 ZNF2 ZNF48 COL5A1-AS1 CACFD1 GTF3C5 VAV2 GC09M133930 GC09P133784
GH09F133713 1.6 FANTOM5 Ensembl ENCODE 11.3 +938.0 938020 3.6 HDGF PKNOX1 ARNT MLX ZFP64 ARID4B DMAP1 YBX1 ZNF2 YY1 TSC1 SARDH DBH-AS1 LINC00094 ENSG00000273249 SURF6 COL5A1-AS1 GC09P133683
GH09F134704 1.4 FANTOM5 Ensembl ENCODE 11.3 -54.3 -54344 6.6 KLF17 FEZF1 GLIS2 ZNF366 EGR2 ZNF263 OVOL3 CEBPB ZFP69B ZNF610 COL5A1-AS1 COL5A1 GC09P134726
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around COL5A1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for COL5A1-AS1 Gene

Chromosome:
9
Start:
134,649,385 bp from pter
End:
134,653,029 bp from pter
Size:
3,645 bases
Orientation:
Minus strand

Genomic View for COL5A1-AS1 Gene

Genes around COL5A1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
COL5A1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for COL5A1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for COL5A1-AS1 Gene

Proteins for COL5A1-AS1 Gene

  • Protein details for COL5A1-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5SY13-COAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by COL5A1-AS1
    Protein Accession:
    Q5SY13

    Protein attributes for COL5A1-AS1 Gene

    Size:
    56 amino acids
    Molecular mass:
    6588 Da
    Quaternary structure:
    No Data Available

neXtProt entry for COL5A1-AS1 Gene

Post-translational modifications for COL5A1-AS1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for COL5A1-AS1 Gene

Domains & Families for COL5A1-AS1 Gene

Protein Domains for COL5A1-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with COL5A1-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for COL5A1-AS1 Gene

Function for COL5A1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for COL5A1-AS1 Gene

Localization for COL5A1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for COL5A1-AS1 Gene

Pathways & Interactions for COL5A1-AS1 Gene

SuperPathways for COL5A1-AS1 Gene

No Data Available

Interacting Proteins for COL5A1-AS1 Gene

Gene Ontology (GO) - Biological Process for COL5A1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for COL5A1-AS1 Gene

Transcripts for COL5A1-AS1 Gene

mRNA/cDNA for COL5A1-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for COL5A1-AS1 Gene

No ASD Table

Relevant External Links for COL5A1-AS1 Gene

GeneLoc Exon Structure for
COL5A1-AS1
ECgene alternative splicing isoforms for
COL5A1-AS1

Expression for COL5A1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for COL5A1-AS1 Gene

genes like me logo Genes that share expression patterns with COL5A1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for COL5A1-AS1 Gene

Orthologs for COL5A1-AS1 Gene

Evolution for COL5A1-AS1 Gene

ENSEMBL:
Gene Tree for COL5A1-AS1 (if available)
TreeFam:
Gene Tree for COL5A1-AS1 (if available)

No data available for Orthologs for COL5A1-AS1 Gene

Paralogs for COL5A1-AS1 Gene

No data available for Paralogs for COL5A1-AS1 Gene

Variants for COL5A1-AS1 Gene

Sequence variations from dbSNP and Humsavar for COL5A1-AS1 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs10858265 -- 134,652,028(+) AGGTA(C/T)TAAGG intron-variant
rs11103456 -- 134,653,152(+) CACCC(A/G)TGGTG intron-variant, nc-transcript-variant, upstream-variant-2KB
rs111066201 -- 134,654,300(+) TGTGT(A/G)TAGGG intron-variant, upstream-variant-2KB
rs111163071 -- 134,654,889(+) GTAGG(A/G)CTGGG intron-variant, upstream-variant-2KB
rs111207679 -- 134,654,775(+) GGTGT(C/G)TAGGG intron-variant, upstream-variant-2KB

Relevant External Links for COL5A1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
COL5A1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for COL5A1-AS1 Gene

Disorders for COL5A1-AS1 Gene

Relevant External Links for COL5A1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
COL5A1-AS1

No disorders were found for COL5A1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for COL5A1-AS1 Gene

Publications for COL5A1-AS1 Gene

  1. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 4 64

Products for COL5A1-AS1 Gene

Sources for COL5A1-AS1 Gene

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