Free for academic non-profit institutions. Other users need a Commercial license

Aliases for COL5A1-AS1 Gene

Subcategory (RNA class) for COL5A1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for COL5A1-AS1 Gene

  • COL5A1 Antisense RNA 1 2 3 4 5
  • COL5A1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • C9orf104 3 4
  • Chromosome 9 Open Reading Frame 104 2
  • COL5A1 Antisense Gene Protein 1 4
  • BA54A22.4 3

External Ids for COL5A1-AS1 Gene

Previous HGNC Symbols for COL5A1-AS1 Gene

  • C9orf104

Previous GeneCards Identifiers for COL5A1-AS1 Gene

  • GC09M137542

Summaries for COL5A1-AS1 Gene

GeneCards Summary for COL5A1-AS1 Gene

COL5A1-AS1 (COL5A1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for COL5A1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for COL5A1-AS1 Gene

Genomics for COL5A1-AS1 Gene

Regulatory Elements for COL5A1-AS1 Gene

Enhancers for COL5A1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09H133886 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.2 +764.3 764344 4.6 ELF3 TBP PKNOX1 FOXA2 ATF1 MLX ARID4B DMAP1 THRB RARA COL5A1-AS1 BRD3 COL5A1 CACFD1 GTF3C5 VAV2 GC09M133930 GC09P133784
GH09H133989 1.7 FANTOM5 ENCODE dbSUPER 11.2 +660.6 660586 5.5 HDGF ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 ZNF207 ZNF143 FOS BRD3 ENSG00000273249 GTF3C5 COL5A1-AS1 DBH COL5A1 VAV2 SURF6 GC09M133983
GH09H134704 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.3 -54.3 -54344 6.6 NFIB KLF17 FEZF1 GLIS2 ZNF366 RCOR1 ATF7 EGR2 OVOL3 ZNF398 COL5A1-AS1 COL5A1 GC09P134726
GH09H134442 1.5 Ensembl ENCODE dbSUPER 10.9 +209.8 209756 2.3 HDGF PKNOX1 ARID4B SIN3A ZNF2 GLIS2 ELK1 ZNF207 ZNF143 FOS RNU6ATAC RXRA LOC100130548 COL5A1 COL5A1-AS1 LOC105376311 MIR4669
GH09H134204 1.2 Ensembl ENCODE 11.2 +447.3 447332 2.7 ELF3 TBP PKNOX1 ATF1 ARID4B ZNF76 KLF17 BMI1 RAD21 EGR1 COL5A1-AS1 RPL7A BRD3 COL5A1 MED22 GC09P134218 ENSG00000273473
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around COL5A1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for COL5A1-AS1 Gene

Genomic Locations for COL5A1-AS1 Gene
3,645 bases
Minus strand

Genomic View for COL5A1-AS1 Gene

Genes around COL5A1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
COL5A1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for COL5A1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for COL5A1-AS1 Gene

Proteins for COL5A1-AS1 Gene

  • Protein details for COL5A1-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Putative uncharacterized protein encoded by COL5A1-AS1
    Protein Accession:

    Protein attributes for COL5A1-AS1 Gene

    56 amino acids
    Molecular mass:
    6588 Da
    Quaternary structure:
    No Data Available

neXtProt entry for COL5A1-AS1 Gene

Post-translational modifications for COL5A1-AS1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for COL5A1-AS1 Gene

Domains & Families for COL5A1-AS1 Gene

Protein Domains for COL5A1-AS1 Gene


Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with COL5A1-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for COL5A1-AS1 Gene

Function for COL5A1-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for COL5A1-AS1 Gene

Localization for COL5A1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for COL5A1-AS1 Gene

Pathways & Interactions for COL5A1-AS1 Gene

SuperPathways for COL5A1-AS1 Gene

No Data Available

Interacting Proteins for COL5A1-AS1 Gene

Gene Ontology (GO) - Biological Process for COL5A1-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for COL5A1-AS1 Gene

Drugs & Compounds for COL5A1-AS1 Gene

No Compound Related Data Available

Transcripts for COL5A1-AS1 Gene

mRNA/cDNA for COL5A1-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for COL5A1-AS1 Gene

No ASD Table

Relevant External Links for COL5A1-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for COL5A1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for COL5A1-AS1 Gene

genes like me logo Genes that share expression patterns with COL5A1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for COL5A1-AS1 Gene

Orthologs for COL5A1-AS1 Gene

Evolution for COL5A1-AS1 Gene

Gene Tree for COL5A1-AS1 (if available)
Gene Tree for COL5A1-AS1 (if available)

No data available for Orthologs for COL5A1-AS1 Gene

Paralogs for COL5A1-AS1 Gene

No data available for Paralogs for COL5A1-AS1 Gene

Variants for COL5A1-AS1 Gene

Sequence variations from dbSNP and Humsavar for COL5A1-AS1 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1000384383 -- 134,653,372(+) GCCTG(A/G)GGCCA intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1000572479 -- 134,654,447(+) TGTAG(A/G)GCTGG intron-variant, upstream-variant-2KB
rs1000761673 -- 134,649,646(+) TAGAA(C/T)CAGAA intron-variant
rs1000988743 -- 134,650,008(+) GGGAG(A/G)GGAAC intron-variant
rs1001435887 -- 134,650,121(+) ATGGC(A/C)TGTGT intron-variant

Relevant External Links for COL5A1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for COL5A1-AS1 Gene

Disorders for COL5A1-AS1 Gene

Relevant External Links for COL5A1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for COL5A1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for COL5A1-AS1 Gene

Publications for COL5A1-AS1 Gene

  1. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray SJ … Dunham I (Nature 2004) 4 60

Products for COL5A1-AS1 Gene

Sources for COL5A1-AS1 Gene

Loading form....