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Aliases for COL4A2-AS2 Gene

Subcategory (RNA class) for COL4A2-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for COL4A2-AS2 Gene

  • COL4A2 Antisense RNA 2 2 3 5
  • COL4A2 Antisense RNA 2 (Non-Protein Coding) 2

External Ids for COL4A2-AS2 Gene

Previous GeneCards Identifiers for COL4A2-AS2 Gene

  • GC13U900855
  • GC13M111110

Summaries for COL4A2-AS2 Gene

GeneCards Summary for COL4A2-AS2 Gene

COL4A2-AS2 (COL4A2 Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for COL4A2-AS2 Gene

Genomics for COL4A2-AS2 Gene

Regulatory Elements for COL4A2-AS2 Gene

Enhancers for COL4A2-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F110710 0.2 ENCODE 14.7 -250.3 -250282 5.9 HDGF PKNOX1 CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 CARS2 ANKRD10-IT1 RPL21P107 PARP1P1 RN7SKP10 LOC102724489 LOC105370369 COL4A2-AS2 COL4A2-AS1 LOC105376684
GH13F110261 1.3 FANTOM5 Ensembl ENCODE 14.7 +199.3 199321 6.6 HDGF PKNOX1 SIN3A FEZF1 DMAP1 ZNF2 ZNF48 YY1 GLIS2 ZNF143 COL4A2-AS2 COL4A2-AS1 ANKRD10-IT1 COL4A1 COL4A2 ENSG00000279237 LOC101927712
GH13F110505 1 Ensembl ENCODE 12.2 -44.8 -44760 5.5 PKNOX1 ATF1 CREB3L1 FEZF1 YY1 CBX5 GATA2 REST TBX21 MEF2D COL4A2-AS2 COL4A2 RAB20 NAXD COL4A2-AS1 GC13P110514
GH13F110523 1.3 FANTOM5 Ensembl ENCODE 11.7 -64.5 -64489 8.5 HDGF PKNOX1 KLF17 ZBTB40 RAD21 YY1 ZNF143 CREM ZNF263 CBFB RAB20 COL4A2-AS2 COL4A2 ANKRD10 NAXD ING1 GC13P110514
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around COL4A2-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Location for COL4A2-AS2 Gene

110,453,466 bp from pter
110,463,641 bp from pter
10,176 bases
Minus strand

Genomic View for COL4A2-AS2 Gene

Genes around COL4A2-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
COL4A2-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for COL4A2-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for COL4A2-AS2 Gene

Proteins for COL4A2-AS2 Gene

Post-translational modifications for COL4A2-AS2 Gene

No Post-translational modifications

Other Protein References for COL4A2-AS2 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for COL4A2-AS2 Gene

Domains & Families for COL4A2-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for COL4A2-AS2 Gene

Function for COL4A2-AS2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for COL4A2-AS2 Gene

Localization for COL4A2-AS2 Gene

Subcellular locations from

Jensen Localization Image for COL4A2-AS2 Gene COMPARTMENTS Subcellular localization image for COL4A2-AS2 gene
Compartment Confidence
nucleus 3
cytosol 1
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for COL4A2-AS2 Gene

Pathways & Interactions for COL4A2-AS2 Gene

SuperPathways for COL4A2-AS2 Gene

No Data Available

Interacting Proteins for COL4A2-AS2 Gene

Gene Ontology (GO) - Biological Process for COL4A2-AS2 Gene


No data available for Pathways by source and SIGNOR curated interactions for COL4A2-AS2 Gene

Transcripts for COL4A2-AS2 Gene

mRNA/cDNA for COL4A2-AS2 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for COL4A2-AS2 Gene

COL4A2 antisense RNA 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for COL4A2-AS2 Gene

No ASD Table

Relevant External Links for COL4A2-AS2 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for COL4A2-AS2 Gene

mRNA expression in normal human tissues for COL4A2-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for COL4A2-AS2 Gene

This gene is overexpressed in Artery - Tibial (x4.1).

Protein differential expression in normal tissues from HIPED for COL4A2-AS2 Gene

This gene is overexpressed in Liver, secretome (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for COL4A2-AS2 Gene

Protein tissue co-expression partners for COL4A2-AS2 Gene

SOURCE GeneReport for Unigene cluster for COL4A2-AS2 Gene:

genes like me logo Genes that share expression patterns with COL4A2-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for COL4A2-AS2 Gene

Orthologs for COL4A2-AS2 Gene

Evolution for COL4A2-AS2 Gene

Gene Tree for COL4A2-AS2 (if available)
Gene Tree for COL4A2-AS2 (if available)

No data available for Orthologs for COL4A2-AS2 Gene

Paralogs for COL4A2-AS2 Gene

No data available for Paralogs for COL4A2-AS2 Gene

Variants for COL4A2-AS2 Gene

Sequence variations from dbSNP and Humsavar for COL4A2-AS2 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs111294337 -- 110,464,578(+) TAAAT(-/AGAG)AGAGC intron-variant, upstream-variant-2KB
rs111613581 -- 110,459,510(+) TCTTA(A/C/T)GAAAT intron-variant
rs111791213 -- 110,456,966(+) CAGGC(A/G)TCCGT intron-variant, reference, synonymous-codon
rs111918920 -- 110,461,374(+) GACAC(A/G)AAGGC intron-variant
rs112023853 -- 110,456,335(+) AGTGT(A/T)CTGGA intron-variant, downstream-variant-500B

Relevant External Links for COL4A2-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for COL4A2-AS2 Gene

Disorders for COL4A2-AS2 Gene

Relevant External Links for COL4A2-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for COL4A2-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for COL4A2-AS2 Gene

Publications for COL4A2-AS2 Gene

No publications were found for COL4A2-AS2 Gene.

Products for COL4A2-AS2 Gene

Sources for COL4A2-AS2 Gene

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