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Aliases for COL4A2-AS2 Gene

Aliases for COL4A2-AS2 Gene

  • COL4A2 Antisense 2 2 3 5
  • COL4A2 Antisense RNA 2 (Non-Protein Coding) 2
  • COL4A2 Antisense RNA 2 2

External Ids for COL4A2-AS2 Gene

Previous GeneCards Identifiers for COL4A2-AS2 Gene

  • GC13U900855
  • GC13M111110

Summaries for COL4A2-AS2 Gene

GeneCards Summary for COL4A2-AS2 Gene

COL4A2-AS2 (COL4A2 Antisense 2) is a Protein Coding gene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for COL4A2-AS2 Gene

Genomics for COL4A2-AS2 Gene

Regulatory Elements for COL4A2-AS2 Gene

Enhancers for COL4A2-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13G110386 1.9 FANTOM5 Ensembl ENCODE dbSUPER 11.3 +62.8 62783 28.3 HDGF FOXA2 PKNOX1 SIN3A FEZF1 ZNF2 YY1 ZNF766 ZNF143 FOS COL4A1 COL4A2 ANKRD10-IT1 COL4A2-AS2 RAB20 GC13P110400 ENSG00000275611
GH13G110523 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.7 -64.5 -64489 8.5 HDGF ATF1 PKNOX1 NFIB KLF17 ZBTB40 RAD21 YY1 ZNF143 RELB RAB20 COL4A2-AS2 COL4A2 ANKRD10 NAXD ING1 GC13P110514
GH13G110519 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11.7 -57.6 -57572 3.4 TBP ARID4B MAX RAD21 YY1 POLR2A SCRT2 HNF4G NR2F6 MAFK RAB20 COL4A2-AS2 COL4A2 NAXD ANKRD10 ING1 GC13P110514
GH13G110505 1.5 Ensembl ENCODE dbSUPER 12.2 -44.8 -44760 5.5 PKNOX1 ATF1 CREB3L1 FEZF1 YY1 TCF12 ZNF766 CBX5 ELK1 GATA2 COL4A2-AS2 COL4A2 RAB20 NAXD COL4A2-AS1 GC13P110514
GH13G110535 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.4 -73.6 -73642 3.5 ETV1 ZNF175 MAX EBF1 YY1 ZFHX2 CTBP1 POLR2A EED SCRT2 RAB20 COL4A2-AS2 COL4A2 ANKRD10 NAXD ING1 GC13P110514
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around COL4A2-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Location for COL4A2-AS2 Gene

Chromosome:
13
Start:
110,453,466 bp from pter
End:
110,463,641 bp from pter
Size:
10,176 bases
Orientation:
Minus strand

Genomic View for COL4A2-AS2 Gene

Genes around COL4A2-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
COL4A2-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for COL4A2-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for COL4A2-AS2 Gene

Proteins for COL4A2-AS2 Gene

Post-translational modifications for COL4A2-AS2 Gene

No Post-translational modifications

Other Protein References for COL4A2-AS2 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for COL4A2-AS2 Gene

Domains & Families for COL4A2-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for COL4A2-AS2 Gene

Function for COL4A2-AS2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for COL4A2-AS2 Gene

Localization for COL4A2-AS2 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for COL4A2-AS2 gene
Compartment Confidence
nucleus 3
mitochondrion 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for COL4A2-AS2 Gene

Pathways & Interactions for COL4A2-AS2 Gene

SuperPathways for COL4A2-AS2 Gene

No Data Available

Interacting Proteins for COL4A2-AS2 Gene

Gene Ontology (GO) - Biological Process for COL4A2-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for COL4A2-AS2 Gene

Transcripts for COL4A2-AS2 Gene

mRNA/cDNA for COL4A2-AS2 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for COL4A2-AS2 Gene

COL4A2 antisense RNA 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for COL4A2-AS2 Gene

No ASD Table

Relevant External Links for COL4A2-AS2 Gene

GeneLoc Exon Structure for
COL4A2-AS2
ECgene alternative splicing isoforms for
COL4A2-AS2

Expression for COL4A2-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for COL4A2-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for COL4A2-AS2 Gene

This gene is overexpressed in Artery - Tibial (x4.1).

Protein differential expression in normal tissues from HIPED for COL4A2-AS2 Gene

This gene is overexpressed in Liver, secretome (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for COL4A2-AS2 Gene



Protein tissue co-expression partners for COL4A2-AS2 Gene

SOURCE GeneReport for Unigene cluster for COL4A2-AS2 Gene:

Hs.640035
genes like me logo Genes that share expression patterns with COL4A2-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for COL4A2-AS2 Gene

Orthologs for COL4A2-AS2 Gene

Evolution for COL4A2-AS2 Gene

ENSEMBL:
Gene Tree for COL4A2-AS2 (if available)
TreeFam:
Gene Tree for COL4A2-AS2 (if available)

No data available for Orthologs for COL4A2-AS2 Gene

Paralogs for COL4A2-AS2 Gene

No data available for Paralogs for COL4A2-AS2 Gene

Variants for COL4A2-AS2 Gene

Sequence variations from dbSNP and Humsavar for COL4A2-AS2 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs886039602 Likely pathogenic 110,462,385(+) CTCCC(A/G)TGAGT intron-variant, splice-donor-variant
rs112262533 Likely benign 110,462,172(+) CAGAA(A/C)AATCA intron-variant, reference, missense
rs202017641 Likely benign 110,457,378(+) GAAGA(A/G)CAGGC intron-variant, reference, missense
rs766981913 Uncertain significance 110,462,346(+) GCCGC(A/G)ATGGG intron-variant, reference, missense
rs886049972 Uncertain significance 110,458,789(+) ATGCA(C/G)ATGTA intron-variant, reference, missense

Relevant External Links for COL4A2-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
COL4A2-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for COL4A2-AS2 Gene

Disorders for COL4A2-AS2 Gene

Relevant External Links for COL4A2-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
COL4A2-AS2

No disorders were found for COL4A2-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for COL4A2-AS2 Gene

Publications for COL4A2-AS2 Gene

No publications were found for COL4A2-AS2 Gene.

Products for COL4A2-AS2 Gene

Sources for COL4A2-AS2 Gene

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