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Aliases for COL4A2-AS1 Gene

Subcategory (RNA class) for COL4A2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for COL4A2-AS1 Gene

  • COL4A2 Antisense RNA 1 2 3 5
  • COL4A2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for COL4A2-AS1 Gene

Previous GeneCards Identifiers for COL4A2-AS1 Gene

  • GC00U933961
  • GC13M111155

Summaries for COL4A2-AS1 Gene

GeneCards Summary for COL4A2-AS1 Gene

COL4A2-AS1 (COL4A2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for COL4A2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for COL4A2-AS1 Gene

Genomics for COL4A2-AS1 Gene

Regulatory Elements for COL4A2-AS1 Gene

Enhancers for COL4A2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13H110505 1.5 Ensembl ENCODE dbSUPER 0.7 -0.2 -222 5 FOXA2 PKNOX1 ATF1 FEZF1 YY1 TCF12 ZNF766 GATA2 ELK1 REST COL4A2-AS2 COL4A2 RAB20 NAXD COL4A2-AS1 GC13P110514
GH13H110502 1 ENCODE dbSUPER 0.7 +4.5 4454 1 PKNOX1 NFRKB MAX EBF1 RARA TCF12 ZNF316 NFE2 MAFK NFE2L2 RAB20 COL4A2-AS1 COL4A2-AS2
GH13H110470 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +36.4 36388 1 HDAC1 PKNOX1 ATF1 TBL1XR1 SIN3A BMI1 BATF TCF12 EGR1 RCOR1 RAB20 ANKRD10 ING1 COL4A2-AS2 COL4A2-AS1
GH13H110463 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +43.8 43819 0 HDGF NR2F1 GLIS2 IKZF1 TARDBP NBN ATF7 IKZF2 RUNX3 RAB20 ANKRD10 ING1 COL4A2-AS2 COL4A2-AS1
GH13H110511 0.6 dbSUPER 0.7 -3.6 -3633 0 TCF12 CTCF NCOR1 SOX6 TAL1 ZBTB33 BCL6 RAD21 ZNF592 RAB20 COL4A2-AS2 COL4A2 COL4A2-AS1 GC13P110514
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around COL4A2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for COL4A2-AS1 Gene

Chromosome:
13
Start:
110,502,575 bp from pter
End:
110,508,179 bp from pter
Size:
5,605 bases
Orientation:
Minus strand

Genomic View for COL4A2-AS1 Gene

Genes around COL4A2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
COL4A2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for COL4A2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for COL4A2-AS1 Gene

Proteins for COL4A2-AS1 Gene

Post-translational modifications for COL4A2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for COL4A2-AS1 Gene

Domains & Families for COL4A2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for COL4A2-AS1 Gene

Function for COL4A2-AS1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for COL4A2-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for COL4A2-AS1 Gene

Localization for COL4A2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for COL4A2-AS1 Gene

Pathways & Interactions for COL4A2-AS1 Gene

SuperPathways for COL4A2-AS1 Gene

No Data Available

Interacting Proteins for COL4A2-AS1 Gene

Gene Ontology (GO) - Biological Process for COL4A2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for COL4A2-AS1 Gene

Drugs & Compounds for COL4A2-AS1 Gene

No Compound Related Data Available

Transcripts for COL4A2-AS1 Gene

mRNA/cDNA for COL4A2-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for COL4A2-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for COL4A2-AS1 Gene

No ASD Table

Relevant External Links for COL4A2-AS1 Gene

GeneLoc Exon Structure for
COL4A2-AS1
ECgene alternative splicing isoforms for
COL4A2-AS1

Expression for COL4A2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for COL4A2-AS1 Gene

genes like me logo Genes that share expression patterns with COL4A2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for COL4A2-AS1 Gene

Orthologs for COL4A2-AS1 Gene

Evolution for COL4A2-AS1 Gene

ENSEMBL:
Gene Tree for COL4A2-AS1 (if available)
TreeFam:
Gene Tree for COL4A2-AS1 (if available)

No data available for Orthologs for COL4A2-AS1 Gene

Paralogs for COL4A2-AS1 Gene

No data available for Paralogs for COL4A2-AS1 Gene

Variants for COL4A2-AS1 Gene

Sequence variations from dbSNP and Humsavar for COL4A2-AS1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs797044947 Likely pathogenic 110,503,855(+) CCCCC(A/G)GGACT intron-variant, reference, missense
rs182278784 Likely benign 110,506,573(+) ACTTC(A/G)AGGGC intron-variant, reference, missense
rs186888528 Likely benign 110,506,590(+) AAGGC(A/G)CACAA intron-variant, reference, synonymous-codon
rs191708663 Likely benign 110,503,964(+) GGAGA(C/T)GGGGC intron-variant, reference, missense
rs201426733 Likely benign 110,506,468(+) GCAGC(A/G)TCAGC intron-variant, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for COL4A2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2748034 CNV deletion 23290073
nsv1038914 CNV loss 25217958
nsv1044234 CNV gain 25217958
nsv1046291 CNV loss 25217958
nsv1046423 CNV gain 25217958
nsv509516 CNV insertion 20534489
nsv563121 CNV loss 21841781
nsv832720 CNV loss 17160897

Relevant External Links for COL4A2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
COL4A2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for COL4A2-AS1 Gene

Disorders for COL4A2-AS1 Gene

Relevant External Links for COL4A2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
COL4A2-AS1

No disorders were found for COL4A2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for COL4A2-AS1 Gene

Publications for COL4A2-AS1 Gene

No publications were found for COL4A2-AS1 Gene.

Products for COL4A2-AS1 Gene

Sources for COL4A2-AS1 Gene

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