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Aliases for COL4A2-AS1 Gene

Subcategory (RNA class) for COL4A2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for COL4A2-AS1 Gene

  • COL4A2 Antisense RNA 1 2 3 5
  • COL4A2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for COL4A2-AS1 Gene

Previous GeneCards Identifiers for COL4A2-AS1 Gene

  • GC00U933961
  • GC13M111155

Summaries for COL4A2-AS1 Gene

GeneCards Summary for COL4A2-AS1 Gene

COL4A2-AS1 (COL4A2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for COL4A2-AS1 Gene

Genomics for COL4A2-AS1 Gene

Regulatory Elements for COL4A2-AS1 Gene

Enhancers for COL4A2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F110261 1.6 FANTOM5 Ensembl ENCODE 13.7 +243.9 243859 6.6 HDGF PKNOX1 SIN3A FEZF1 DMAP1 ZNF2 ZNF48 YY1 GLIS2 ZNF143 COL4A2-AS2 COL4A2-AS1 ANKRD10-IT1 COL4A1 COL4A2 ENSG00000279237 LOC101927712
GH13F110911 1.4 FANTOM5 ENCODE 13.6 -406.5 -406531 6.5 HDGF PKNOX1 WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF48 ZNF2 YY1 ANKRD10-IT1 COL4A2-AS2 COL4A2-AS1 ANKRD10 RAB20 NAXD ING1 ARHGEF7
GH13F110710 1.2 ENCODE 13.7 -205.7 -205744 5.9 HDGF PKNOX1 CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 CARS2 ANKRD10-IT1 RPL21P107 PARP1P1 RN7SKP10 LOC102724489 LOC105370369 COL4A2-AS2 COL4A2-AS1 LOC105376684
GH13F110505 1.3 Ensembl ENCODE 0.8 -0.2 -222 5.5 PKNOX1 ATF1 CREB3L1 FEZF1 YY1 CBX5 GATA2 REST TBX21 MEF2D COL4A2-AS2 COL4A2 RAB20 NAXD COL4A2-AS1 GC13P110514
GH13F110502 0.7 ENCODE 0.8 +4.5 4454 2.0 PKNOX1 MAX FEZF1 EBF1 RARA ZNF316 NFE2 MAFK NFE2L2 ZNF639 RAB20 COL4A2-AS1 COL4A2-AS2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around COL4A2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for COL4A2-AS1 Gene

Chromosome:
13
Start:
110,502,575 bp from pter
End:
110,508,179 bp from pter
Size:
5,605 bases
Orientation:
Minus strand

Genomic View for COL4A2-AS1 Gene

Genes around COL4A2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
COL4A2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for COL4A2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for COL4A2-AS1 Gene

Proteins for COL4A2-AS1 Gene

Post-translational modifications for COL4A2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for COL4A2-AS1 Gene

Domains & Families for COL4A2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for COL4A2-AS1 Gene

Function for COL4A2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for COL4A2-AS1 Gene

Localization for COL4A2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for COL4A2-AS1 Gene

Pathways & Interactions for COL4A2-AS1 Gene

SuperPathways for COL4A2-AS1 Gene

No Data Available

Interacting Proteins for COL4A2-AS1 Gene

Gene Ontology (GO) - Biological Process for COL4A2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for COL4A2-AS1 Gene

Transcripts for COL4A2-AS1 Gene

mRNA/cDNA for COL4A2-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for COL4A2-AS1 Gene

No ASD Table

Relevant External Links for COL4A2-AS1 Gene

GeneLoc Exon Structure for
COL4A2-AS1
ECgene alternative splicing isoforms for
COL4A2-AS1

Expression for COL4A2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for COL4A2-AS1 Gene

genes like me logo Genes that share expression patterns with COL4A2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for COL4A2-AS1 Gene

Orthologs for COL4A2-AS1 Gene

Evolution for COL4A2-AS1 Gene

ENSEMBL:
Gene Tree for COL4A2-AS1 (if available)
TreeFam:
Gene Tree for COL4A2-AS1 (if available)

No data available for Orthologs for COL4A2-AS1 Gene

Paralogs for COL4A2-AS1 Gene

No data available for Paralogs for COL4A2-AS1 Gene

Variants for COL4A2-AS1 Gene

Sequence variations from dbSNP and Humsavar for COL4A2-AS1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs797044947 Likely pathogenic 110,503,855(+) CCCCC(A/G)GGACT intron-variant, reference, missense
rs10454543 -- 110,502,363(+) tctgt(C/T)gccca intron-variant, downstream-variant-500B
rs10454544 -- 110,502,525(+) tcacc(A/G)tgttg intron-variant, downstream-variant-500B
rs10558706 -- 110,506,258(+) TCTCT(-/CT)CTCTC intron-variant
rs111244548 -- 110,509,276(+) ACACA(C/T)ACACA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for COL4A2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2748034 CNV deletion 23290073
nsv1038914 CNV loss 25217958
nsv1044234 CNV gain 25217958
nsv1046291 CNV loss 25217958
nsv1046423 CNV gain 25217958
nsv509516 CNV insertion 20534489
nsv563121 CNV loss 21841781
nsv832720 CNV loss 17160897

Relevant External Links for COL4A2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
COL4A2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for COL4A2-AS1 Gene

Disorders for COL4A2-AS1 Gene

Relevant External Links for COL4A2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
COL4A2-AS1

No disorders were found for COL4A2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for COL4A2-AS1 Gene

Publications for COL4A2-AS1 Gene

No publications were found for COL4A2-AS1 Gene.

Products for COL4A2-AS1 Gene

Sources for COL4A2-AS1 Gene

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