Free for academic non-profit institutions. Other users need a Commercial license

Aliases for COL26A1 Gene

Aliases for COL26A1 Gene

  • Collagen Type XXVI Alpha 1 Chain 2 3 5
  • Emilin And Multimerin Domain-Containing Protein 2 3 4
  • Collagen, Type XXVI, Alpha 1 2 3
  • EMI Domain Containing 2 2 3
  • EMID2 3 4
  • EMU2 3 4
  • EMI Domain-Containing Protein 2 4
  • Collagen Alpha-1(XXVI) Chain 3
  • Alpha-1 Type XXVI Collagen 4
  • Emu2 Gene 2
  • EMI6 3
  • SH2B 3

External Ids for COL26A1 Gene

Previous HGNC Symbols for COL26A1 Gene

  • EMID2

Previous GeneCards Identifiers for COL26A1 Gene

  • GC07P099489
  • GC07P100552
  • GC07P100566
  • GC07P101007

Summaries for COL26A1 Gene

Entrez Gene Summary for COL26A1 Gene

  • This gene encodes a protein containing an emilin domain and two collagen stretches. This gene may be associated with aspirin-intolerant asthma. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Aug 2013]

GeneCards Summary for COL26A1 Gene

COL26A1 (Collagen Type XXVI Alpha 1 Chain) is a Protein Coding gene. Among its related pathways are Degradation of the extracellular matrix and Collagen chain trimerization. An important paralog of this gene is EMID1.

Gene Wiki entry for COL26A1 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for COL26A1 Gene

Genomics for COL26A1 Gene

Regulatory Elements for COL26A1 Gene

Enhancers for COL26A1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G101307 1.5 FANTOM5 ENCODE dbSUPER 31.7 -54.3 -54267 1.7 PKNOX1 MLX CREB3L1 AGO1 ARID4B E2F7 SIN3A DMAP1 ZNF2 KLF7 LOC101927746 COL26A1 NAT16 VGF PIR32353
GH07G101362 1 ENCODE 35.6 +0.8 820 2.1 SIN3A ZNF2 ZNF48 GLIS2 ZNF143 KLF7 REST ZNF610 GLIS1 SP7 COL26A1 NYAP1 FIS1 ENSG00000233683
GH07G101400 1.7 FANTOM5 Ensembl ENCODE dbSUPER 18.9 +39.3 39294 2.4 TBP NFIB SIN3A YBX1 FEZF1 NFXL1 ZEB1 ETS1 GLIS2 GATA2 COL26A1 ENSG00000239486 LOC101927746 GC07M101393 GC07M101408
GH07G101410 1.4 Ensembl ENCODE dbSUPER 19.1 +48.8 48787 1.6 CBX3 ZSCAN4 ARID4B KLF17 BMI1 ZNF2 ZBTB7B RAD21 ZNF121 GLIS2 COL26A1 ACHE GC07M101408 GC07M101501
GH07G101372 0.7 dbSUPER 32 +10.4 10439 0.8 ZNF263 RFX1 NRF1 ELF1 ZBTB7A ZNF121 ZFHX2 EGR1 FOXJ2 ZNF24 COL26A1 ENSG00000233683
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around COL26A1 on UCSC Golden Path with GeneCards custom track

Promoters for COL26A1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000215937 780 1201 ZNF2 ZNF48 GLIS2 ZNF143 KLF7 REST ZNF610 GLIS1 SP7 CTCF

Genomic Location for COL26A1 Gene

Chromosome:
7
Start:
101,362,820 bp from pter
End:
101,559,024 bp from pter
Size:
196,205 bases
Orientation:
Plus strand

Genomic View for COL26A1 Gene

Genes around COL26A1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
COL26A1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for COL26A1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for COL26A1 Gene

Proteins for COL26A1 Gene

  • Protein details for COL26A1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96A83-COQA1_HUMAN
    Recommended name:
    Collagen alpha-1(XXVI) chain
    Protein Accession:
    Q96A83
    Secondary Accessions:
    • Q32M90

    Protein attributes for COL26A1 Gene

    Size:
    441 amino acids
    Molecular mass:
    45381 Da
    Quaternary structure:
    • Homotrimer or heterotrimer.

    Three dimensional structures from OCA and Proteopedia for COL26A1 Gene

    Alternative splice isoforms for COL26A1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for COL26A1 Gene

Post-translational modifications for COL26A1 Gene

  • Hydroxylated on proline residues.
  • Glycosylation at posLast=7070, posLast=132132, posLast=339339, posLast=343343, and posLast=358358
  • Modification sites at PhosphoSitePlus

Other Protein References for COL26A1 Gene

No data available for DME Specific Peptides for COL26A1 Gene

Domains & Families for COL26A1 Gene

Gene Families for COL26A1 Gene

Protein Domains for COL26A1 Gene

Suggested Antigen Peptide Sequences for COL26A1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with COL26A1: view

No data available for UniProtKB/Swiss-Prot for COL26A1 Gene

Function for COL26A1 Gene

genes like me logo Genes that share phenotypes with COL26A1: view

Animal Model Products

  • Taconic Biosciences Mouse Models for COL26A1

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for COL26A1 Gene

Localization for COL26A1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for COL26A1 Gene

Secreted, extracellular space, extracellular matrix.

Gene Ontology (GO) - Cellular Components for COL26A1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region TAS --
GO:0005578 proteinaceous extracellular matrix IEA --
GO:0005581 collagen trimer IEA --
GO:0005783 endoplasmic reticulum IEA --
GO:0005788 endoplasmic reticulum lumen TAS --
genes like me logo Genes that share ontologies with COL26A1: view

No data available for Subcellular locations from COMPARTMENTS for COL26A1 Gene

Pathways & Interactions for COL26A1 Gene

genes like me logo Genes that share pathways with COL26A1: view

Interacting Proteins for COL26A1 Gene

Gene Ontology (GO) - Biological Process for COL26A1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0010811 positive regulation of cell-substrate adhesion IEA --
GO:0030574 collagen catabolic process TAS --
genes like me logo Genes that share ontologies with COL26A1: view

No data available for SIGNOR curated interactions for COL26A1 Gene

Drugs & Compounds for COL26A1 Gene

(2) Drugs for COL26A1 Gene - From: PharmGKB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Aspirin Approved, Vet_approved Pharma Channel blocker 1152
Citalopram Approved Pharma 512
genes like me logo Genes that share compounds with COL26A1: view

Transcripts for COL26A1 Gene

Unigene Clusters for COL26A1 Gene

Collagen, type XXVI, alpha 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for COL26A1 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11a · 11b ^ 12 ^ 13a · 13b
SP1: -
SP2:
SP3:
SP4:

Relevant External Links for COL26A1 Gene

GeneLoc Exon Structure for
COL26A1
ECgene alternative splicing isoforms for
COL26A1

Expression for COL26A1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for COL26A1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for COL26A1 Gene

This gene is overexpressed in Brain - Cortex (x11.0), Brain - Frontal Cortex (BA9) (x8.3), and Brain - Anterior cingulate cortex (BA24) (x6.3).

Protein differential expression in normal tissues from HIPED for COL26A1 Gene

This gene is overexpressed in Placenta (53.4) and Testis (15.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for COL26A1 Gene



Protein tissue co-expression partners for COL26A1 Gene

NURSA nuclear receptor signaling pathways regulating expression of COL26A1 Gene:

COL26A1

SOURCE GeneReport for Unigene cluster for COL26A1 Gene:

Hs.654854
genes like me logo Genes that share expression patterns with COL26A1: view

Primer Products

No data available for mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for COL26A1 Gene

Orthologs for COL26A1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for COL26A1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia COL26A1 35
  • 89 (a)
OneToOne
dog
(Canis familiaris)
Mammalia COL26A1 35
  • 83 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Col26a1 34 16 35
  • 81.89 (n)
rat
(Rattus norvegicus)
Mammalia Col26a1 34
  • 81.89 (n)
oppossum
(Monodelphis domestica)
Mammalia COL26A1 35
  • 67 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia COL26A1 35
  • 62 (a)
OneToOne
chicken
(Gallus gallus)
Aves EMID2 34
  • 70.21 (n)
lizard
(Anolis carolinensis)
Reptilia COL26A1 35
  • 67 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia col26a1 34
  • 59.59 (n)
zebrafish
(Danio rerio)
Actinopterygii COL26A1 35
  • 56 (a)
OneToOne
Species where no ortholog for COL26A1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for COL26A1 Gene

ENSEMBL:
Gene Tree for COL26A1 (if available)
TreeFam:
Gene Tree for COL26A1 (if available)

Paralogs for COL26A1 Gene

Paralogs for COL26A1 Gene

genes like me logo Genes that share paralogs with COL26A1: view

Variants for COL26A1 Gene

Sequence variations from dbSNP and Humsavar for COL26A1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000003096 -- 101,486,416(+) AGCAG(A/T)GACAT intron-variant
rs1000004368 -- 101,492,141(+) AGGGT(G/T)AGAAC intron-variant
rs1000008801 -- 101,461,444(+) CAGAT(C/G)CCCGC intron-variant
rs1000013976 -- 101,437,024(+) CATCC(A/G)GGCAC intron-variant
rs1000030185 -- 101,555,626(+) CATAG(C/T)TGATG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for COL26A1 Gene

Variant ID Type Subtype PubMed ID
dgv11535n54 CNV gain 21841781
dgv1230e199 CNV deletion 23128226
dgv1943e212 CNV gain 25503493
dgv236e55 CNV gain 17911159
dgv445e215 CNV deletion 23714750
dgv6537n100 CNV gain 25217958
dgv829n27 CNV gain 19166990
esv1000049 CNV deletion 20482838
esv1010932 CNV deletion 20482838
esv1729362 CNV deletion 17803354
esv22098 CNV loss 19812545
esv2422376 CNV duplication 17116639
esv2658057 CNV deletion 23128226
esv2663669 CNV deletion 23128226
esv2666978 CNV deletion 23128226
esv2667662 CNV deletion 23128226
esv26989 CNV loss 19812545
esv2734927 CNV deletion 23290073
esv2734929 CNV deletion 23290073
esv2734930 CNV deletion 23290073
esv2734931 CNV deletion 23290073
esv2734932 CNV deletion 23290073
esv2734933 CNV deletion 23290073
esv2752134 CNV gain 17911159
esv2761351 CNV gain 21179565
esv3277717 CNV deletion 24192839
esv3542173 CNV deletion 23714750
esv3542176 CNV deletion 23714750
esv3542177 CNV deletion 23714750
esv3542179 CNV deletion 23714750
esv3572029 CNV loss 25503493
esv3572030 CNV loss 25503493
esv3572032 CNV loss 25503493
esv3572033 CNV loss 25503493
esv3572034 CNV loss 25503493
esv3572035 CNV loss 25503493
esv3614330 CNV gain 21293372
esv3614331 CNV loss 21293372
esv3614332 CNV loss 21293372
esv3614333 CNV gain 21293372
esv3614334 CNV loss 21293372
esv3614335 CNV loss 21293372
esv3614336 CNV gain 21293372
esv3891166 CNV loss 25118596
esv999577 CNV deletion 20482838
nsv1020524 CNV gain 25217958
nsv1023393 CNV gain 25217958
nsv1025029 CNV gain 25217958
nsv1030604 CNV gain 25217958
nsv1073302 CNV deletion 25765185
nsv1109905 CNV deletion 24896259
nsv1109906 CNV deletion 24896259
nsv1110808 CNV insertion 24896259
nsv1124251 CNV deletion 24896259
nsv1161591 CNV deletion 26073780
nsv366777 CNV deletion 16902084
nsv511983 CNV loss 21212237
nsv517175 CNV gain+loss 19592680
nsv5876 CNV insertion 18451855
nsv607979 CNV loss 21841781
nsv607981 CNV gain 21841781
nsv607983 CNV loss 21841781
nsv831076 CNV loss 17160897
nsv831077 CNV loss 17160897
nsv831078 CNV loss 17160897

Variation tolerance for COL26A1 Gene

Residual Variation Intolerance Score: 80.4% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for COL26A1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
COL26A1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for COL26A1 Gene

Disorders for COL26A1 Gene

Relevant External Links for COL26A1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
COL26A1

No disorders were found for COL26A1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for COL26A1 Gene

Publications for COL26A1 Gene

  1. Developmental expression and biochemical characterization of Emu family members. (PMID: 12221002) Leimeister C. … Gessler M. (Dev. Biol. 2002) 2 3 4 64
  2. Type XXVI collagen, a new member of the collagen family, is specifically expressed in the testis and ovary. (PMID: 12145293) Sato K. … Nagata K. (J. Biol. Chem. 2002) 2 3 64
  3. Comparative proteomic analysis of supportive and unsupportive extracellular matrix substrates for human embryonic stem cell maintenance. (PMID: 23658023) Soteriou D. … Kimber S.J. (J. Biol. Chem. 2013) 3 64
  4. Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects. (PMID: 24324551) Deng X. … Seielstad M. (PLoS ONE 2013) 3 64
  5. Genome-wide pharmacogenomic study of citalopram-induced side effects in STAR*D. (PMID: 22760553) Adkins D.E. … van den Oord E.J. (Transl Psychiatry 2012) 3 64

Products for COL26A1 Gene

Sources for COL26A1 Gene

Content
Loading form....