Aliases for COL26A1 Gene
Aliases for COL26A1 Gene
External Ids for COL26A1 Gene
- HGNC: 18038
- Entrez Gene: 136227
- Ensembl: ENSG00000160963
- OMIM: 608927
- UniProtKB: Q96A83
Previous HGNC Symbols for COL26A1 Gene
- EMID2
Previous GeneCards Identifiers for COL26A1 Gene
- GC07P099489
- GC07P100552
- GC07P100566
- GC07P101007
Summaries for COL26A1 Gene
-
This gene encodes a protein containing an emilin domain and two collagen stretches. This gene may be associated with aspirin-intolerant asthma. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Aug 2013]
GeneCards Summary for COL26A1 Gene
COL26A1 (Collagen Type XXVI Alpha 1 Chain) is a Protein Coding gene. Among its related pathways are Degradation of the extracellular matrix and Collagen chain trimerization. An important paralog of this gene is EMID1.
No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for COL26A1 Gene
Genomics for COL26A1 Gene
Regulatory Elements for COL26A1 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH07G101307 | 1.5 | FANTOM5 ENCODE dbSUPER | 31.7 | -54.3 | -54267 | 1.7 | PKNOX1 MLX CREB3L1 AGO1 ARID4B E2F7 SIN3A DMAP1 ZNF2 KLF7 | LOC101927746 COL26A1 NAT16 VGF PIR32353 |
| GH07G101362 | 1 | ENCODE | 35.6 | +0.8 | 820 | 2.1 | SIN3A ZNF2 ZNF48 GLIS2 ZNF143 KLF7 REST ZNF610 GLIS1 SP7 | COL26A1 NYAP1 FIS1 ENSG00000233683 |
| GH07G101400 | 1.7 | FANTOM5 Ensembl ENCODE dbSUPER | 18.9 | +39.3 | 39294 | 2.4 | TBP NFIB SIN3A YBX1 FEZF1 NFXL1 ZEB1 ETS1 GLIS2 GATA2 | COL26A1 ENSG00000239486 LOC101927746 GC07M101393 GC07M101408 |
| GH07G101410 | 1.4 | Ensembl ENCODE dbSUPER | 19.1 | +48.8 | 48787 | 1.6 | CBX3 ZSCAN4 ARID4B KLF17 BMI1 ZNF2 ZBTB7B RAD21 ZNF121 GLIS2 | COL26A1 ACHE GC07M101408 GC07M101501 |
| GH07G101372 | 0.7 | dbSUPER | 32 | +10.4 | 10439 | 0.8 | ZNF263 RFX1 NRF1 ELF1 ZBTB7A ZNF121 ZFHX2 EGR1 FOXJ2 ZNF24 | COL26A1 ENSG00000233683 |
Regulatory Element Products
Genomic Location for COL26A1 Gene
- Chromosome:
- 7
- Start:
- 101,362,820 bp from pter
- End:
- 101,559,024 bp from pter
- Size:
- 196,205 bases
- Orientation:
- Plus strand
Genomic View for COL26A1 Gene
- Cytogenetic band:
-
- 7q22.1 by Ensembl
- 7q22.1 by Entrez Gene
- 7q22.1 by HGNC
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for COL26A1 Gene
Proteins for COL26A1 Gene
-
Protein details for COL26A1 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q96A83-COQA1_HUMAN
- Recommended name:
- Collagen alpha-1(XXVI) chain
- Protein Accession:
- Q96A83
- Q32M90
Protein attributes for COL26A1 Gene
- Size:
- 441 amino acids
- Molecular mass:
- 45381 Da
- Quaternary structure:
-
- Homotrimer or heterotrimer.
Three dimensional structures from OCA and Proteopedia for COL26A1 Gene
Protein Expression for COL26A1 Gene
Post-translational modifications for COL26A1 Gene
- Hydroxylated on proline residues.
- Glycosylation at posLast=7070, posLast=132132, posLast=339339, posLast=343343, and posLast=358358
- Modification sites at PhosphoSitePlus
Other Protein References for COL26A1 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- Novus Biologicals Antibodies for COL26A1
- Invitrogen Antibodies for COL26A1
- GeneTex COL26A1 antibody for COL26A1
-
Santa Cruz Biotechnology (SCBT) Antibodies for COL26A1
Protein Products
-
OriGene Purified Proteins for COL26A1
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- Search GeneTex for Proteins for COL26A1
Assay Products
No data available for DME Specific Peptides for COL26A1 Gene
Domains & Families for COL26A1 Gene
Gene Families for COL26A1 Gene
Protein Domains for COL26A1 Gene
- InterPro:
- Blocks:
- ProtoNet:
Suggested Antigen Peptide Sequences for COL26A1 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
No data available for UniProtKB/Swiss-Prot for COL26A1 Gene
Function for COL26A1 Gene
Phenotypes for COL26A1 Gene
- GenomeRNAi human phenotypes for COL26A1:
-
- Increased viability
- Increased vaccinia virus (VACV) infection
- Decreased JFH-1 genotype 2a Hepatitis C virus (HCV) infection
- Decreased IL-8 secretion
- Decreased JFH-1 genotype 2a Hepatitis C virus (HCV) infection after viral supernatant infection
- Decreased JFH-1 genotype 2a Hepatitis C virus (HCV) infection after direct virus infection
Animal Model Products
-
Taconic Biosciences Mouse Models for COL26A1
- Cyagen custom Knockout/knockin (KOKI) mouse models for COL26A1
-
-
ViGene Biosciences lentiviral particle packaged cDNA for COL26A1 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for COL26A1 gene
- Search ViGene Biosciences for COL26A1
CRISPR Products
-
OriGene CRISPR knockouts for COL26A1
-
Santa Cruz Biotechnology (SCBT) CRISPR for COL26A1
miRNA Products
- Search ViGene Biosciences for COL26A1
Inhibitory RNA Products
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for COL26A1
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-
ViGene Biosciences ready-to-package AAV shRNAs for COL26A1 gene
Clone Products
-
OriGene ORF clones in human for COL26A1
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- VectorBuilder custom plasmid, inducible vectors for COL26A1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for COL26A1
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Cell Line Products
-
Horizon Cell Lines for COL26A1
-
ViGene Biosciences adenoviral particle packaged cDNA for COL26A1 gene
-
ViGene Biosciences lentiviral particle packaged cDNA for COL26A1 gene
-
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Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for COL26A1 Gene
Localization for COL26A1 Gene
Subcellular locations from UniProtKB/Swiss-Prot for COL26A1 Gene
- Secreted, extracellular space, extracellular matrix.
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005576 | extracellular region | TAS | -- |
| GO:0005578 | proteinaceous extracellular matrix | IEA | -- |
| GO:0005581 | collagen trimer | IEA | -- |
| GO:0005783 | endoplasmic reticulum | IEA | -- |
| GO:0005788 | endoplasmic reticulum lumen | TAS | -- |
No data available for Subcellular locations from COMPARTMENTS for COL26A1 Gene
Pathways & Interactions for COL26A1 Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | Collagen chain trimerization | ||
| 2 | Degradation of the extracellular matrix | ||
Pathways by source for COL26A1 Gene
6 Reactome pathways for COL26A1 Gene
Interacting Proteins for COL26A1 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0010811 | positive regulation of cell-substrate adhesion | IEA | -- |
| GO:0030574 | collagen catabolic process | TAS | -- |
No data available for SIGNOR curated interactions for COL26A1 Gene
Transcripts for COL26A1 Gene
mRNA/cDNA for COL26A1 Gene
- (5) REFSEQ mRNAs :
- (4) Additional mRNA sequences :
- (54) Selected AceView cDNA sequences:
- (3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for COL26A1 Gene
CRISPR Products
-
OriGene CRISPR knockouts for COL26A1
-
Santa Cruz Biotechnology (SCBT) CRISPR for COL26A1
miRNA Products
- Search ViGene Biosciences for COL26A1
Inhibitory RNA Products
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for COL26A1
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-
ViGene Biosciences ready-to-package AAV shRNAs for COL26A1 gene
Clone Products
-
OriGene ORF clones in human for COL26A1
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- VectorBuilder custom plasmid, inducible vectors for COL26A1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for COL26A1
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Flow Cytometry Products
| ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11a | · | 11b | ^ | 12 | ^ | 13a | · | 13b |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | ||||||||||||||||||||||||||||||||
| SP2: | |||||||||||||||||||||||||||||||||
| SP3: | |||||||||||||||||||||||||||||||||
| SP4: |
Expression for COL26A1 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
-
Head Mesenchyme (Muscoskeletal System)
- Dental Mesenchymal Cells Branchial Arch 1
-
Tooth
- Dental Mesenchymal Cells Branchial Arch 1
-
Brain (Nervous System)
- Mature Endothelial Cells Blood Brain Barrier
-
Endothelium (Cardiovascular System)
- Mature Endothelial Cells Blood Brain Barrier
-
Ovary (Reproductive System)
mRNA differential expression in normal tissues according to GTEx for COL26A1 Gene
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for COL26A1 Gene
NURSA nuclear receptor signaling pathways regulating expression of COL26A1 Gene:
COL26A1SOURCE GeneReport for Unigene cluster for COL26A1 Gene:
Hs.654854Primer Products
-
OriGene qPCR primer pairs for COL26A1
No data available for mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for COL26A1 Gene
Orthologs for COL26A1 Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| cow (Bos Taurus) |
Mammalia | COL26A1 35 |
|
OneToOne | |
| dog (Canis familiaris) |
Mammalia | COL26A1 35 |
|
OneToOne | |
| mouse (Mus musculus) |
Mammalia | Col26a1 34 16 35 |
|
||
| rat (Rattus norvegicus) |
Mammalia | Col26a1 34 |
|
||
| oppossum (Monodelphis domestica) |
Mammalia | COL26A1 35 |
|
OneToOne | |
| platypus (Ornithorhynchus anatinus) |
Mammalia | COL26A1 35 |
|
OneToOne | |
| chicken (Gallus gallus) |
Aves | EMID2 34 |
|
||
| lizard (Anolis carolinensis) |
Reptilia | COL26A1 35 |
|
OneToOne | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | col26a1 34 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | COL26A1 35 |
|
OneToOne |
- Species where no ortholog for COL26A1 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- chimpanzee (Pan troglodytes)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Paralogs for COL26A1 Gene
Variants for COL26A1 Gene
| SNP ID | Clin | Chr 07 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000003096 | -- | 101,486,416(+) | AGCAG(A/T)GACAT | intron-variant | |
| rs1000004368 | -- | 101,492,141(+) | AGGGT(G/T)AGAAC | intron-variant | |
| rs1000008801 | -- | 101,461,444(+) | CAGAT(C/G)CCCGC | intron-variant | |
| rs1000013976 | -- | 101,437,024(+) | CATCC(A/G)GGCAC | intron-variant | |
| rs1000030185 | -- | 101,555,626(+) | CATAG(C/T)TGATG | intron-variant |
Relevant External Links for COL26A1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- COL26A1
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for COL26A1 Gene
Disorders for COL26A1 Gene
Relevant External Links for COL26A1
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- COL26A1
No disorders were found for COL26A1 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for COL26A1 Gene
Publications for COL26A1 Gene
- Developmental expression and biochemical characterization of Emu family members. (PMID: 12221002) Leimeister C. … Gessler M. (Dev. Biol. 2002) 2 3 4 64
- Type XXVI collagen, a new member of the collagen family, is specifically expressed in the testis and ovary. (PMID: 12145293) Sato K. … Nagata K. (J. Biol. Chem. 2002) 2 3 64
- Comparative proteomic analysis of supportive and unsupportive extracellular matrix substrates for human embryonic stem cell maintenance. (PMID: 23658023) Soteriou D. … Kimber S.J. (J. Biol. Chem. 2013) 3 64
- Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects. (PMID: 24324551) Deng X. … Seielstad M. (PLoS ONE 2013) 3 64
- Genome-wide pharmacogenomic study of citalopram-induced side effects in STAR*D. (PMID: 22760553) Adkins D.E. … van den Oord E.J. (Transl Psychiatry 2012) 3 64
Products for COL26A1 Gene
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- Humanized Mice
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- Horizon Cell Lines for COL26A1
- Cyagen custom Knockout/knockin (KOKI) mouse models for COL26A1
- VectorBuilder custom plasmid, inducible vectors for COL26A1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for COL26A1
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for COL26A1 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer




