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Aliases & Descriptions for COL1A1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| | | Descriptions |
|---|
| Alpha-1 type I collagen 3 | | alpha 1 type I collagen 2 | | collagen alpha 1 chain type I 2 | | collagen of skin, tendon and bone, alpha-1 chain 2 | | collagen, type I, alpha 1 2 | | pro-alpha-1 collagen type 1 2 |
|
| | Search outside databases for aliases for COL1A1 genePrevious GC identifers: GC17M047864 GC17M050742 GC17M048602 GC17M048736 |
Summaries for COL1A1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for COL1A1: This gene encodes the pro-alpha1 chains of type I collagen whose triple helix comprises two alpha1 chains and one alpha2 chain. Type I is a fibril-forming collagen found in most connective tissues and is abundant in bone, cornea, dermis and tendon. Mutations in this gene are associated with osteogenesis imperfecta types I-IV, Ehlers-Danlos syndrome type VIIA, Ehlers-Danlos syndrome Classical type, Caffey Disease and idiopathic osteoporosis. Reciprocal translocations between chromosomes 17 and 22, where this gene and the gene for platelet-derived growth factor beta are located, are associated with a particular type of skin tumor called dermatofibrosarcoma protuberans, resulting from unregulated expression of the growth factor. Two transcripts, resulting from the use of alternate polyadenylation signals, have been identified for this gene. [provided by R. Dalgleish] UniProtKB/Swiss-Prot: CO1A1_HUMAN, P02452Function: Type I collagen is a member of group I collagen (fibrillar forming collagen)Gene Wiki entry for COL1A1 (Collagen%2C_type_I%2C_alpha_1) |
Genomic Location for COL1A1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the COL1A1 gene 
Entrez Gene cytogenetic band: 17q21.33 Ensembl cytogenetic band: 17q21.33 HGNC cytogenetic band: 17q21.33COL1A1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 17 GeneLoc Exon Structure GeneLoc location for GC17M045617:
(about GC identifiers)
Start:
|
45,616,456 bp from pter |
End:
|
45,633,999 bp from pter |
Size:
|
17,544 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000017.9 NT_010783.14
| Proteins for COL1A1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: CO1A1_HUMAN, P02452 (See
protein sequence)Recommended Name: Collagen alpha-1(I) chain precursor Size: 1464 amino acids; 138911 Da
Subunit: Trimers of one alpha 2(I) and two alpha 1(I) chains. Interacts with MRC2 (By similarity)
Subcellular location: Secreted, extracellular space, extracellular matrix (By similarity)
PDB structure from and Proteopedia :1Q7D (3D)
 3EJH (3D)
 
Secondary accessions: O76045 P78441 Q13896 Q13902 Q13903 Q14037 Q14992 Q15176 Q15201 Q16050 Q59F64 Q7KZ30 Q7KZ34 Q8IVI5 Q8N473 Q9UML6 Q9UMM7Post-translational modifications:
Proline residues at the third position of the tripeptide repeating unit (G-X-Y) are hydroxylated in some or all of the chains1
O-linked glycan consists of a Glc-Gal disaccharide bound to the oxygen atom of a post-translationally added hydroxyl group1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_000079.2
ENSEMBL proteins: ENSP00000225964
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
4 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for COL1A1: Assays for COL1A1: | Protein
Domains/ Families for COL1A1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P02452
ProtoNet protein and cluster: P02452 4 Blocks protein families: IPB000885 Fibrillar collagen IPB001007 von Willebrand factor IPB008160 Collagen triple helix repeat IPB008161 Collagen helix repeat
UniProtKB/Swiss-Prot: CO1A1_HUMAN, P02452Similarity: Belongs to the fibrillar collagen familySimilarity: Contains 1 VWFC domain | Gene Function for COL1A1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000088
Applied Biosystems Silencer® siRNAs for COL1A1
Sigma-Aldrich siRNA for COL1A1  Sigma-Aldrich shRNA Panels and shRNA for COL1A1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_000088                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000088                                  untagged cDNA clone in CMV expression vector: NM_000088 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000088
UniProtKB/Swiss-Prot: CO1A1_HUMAN, P02452Function: Type I collagen is a member of group I collagen (fibrillar forming collagen)Genatlas biochemistry entry for COL1A1:collagen type I,alpha 1,fibril forming,putative downregulated c-Myc target gene,15/25 MGI mutant phenotypes (inferred from 12 alleles ) (MGI details for Col1a1) (see all 25
):
2 Gene Ontology (GO) molecular function terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005201 | extracellular matrix structural constituent |
IEA | -- | | GO:0042802 | identical protein binding |
IDA | 17211858 | About this table | Pathways & Interactions for COL1A1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
3 Sigma-Aldrich "Your Favorite Gene" Pathways for COL1A1 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for COL1A1 
5/203 Interacting proteins for COL1A1 (ENSP000002259643 P024521, 2) via UniProtKB, MINT, and/or STRING (see all 203
)About this table
5/16 Gene Ontology (GO) biological process terms (links to tree view) (see all 16
): About this table
|
Drugs & Compounds for COL1A1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for COL1A1 10/17 Novoseek chemical compound relationships for COL1A1 gene (see all 17
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| procollagen |
66.07 |
3 |
8418862 (1), 15727634 (1), 9076960 (1) |
| nppa |
57.42 |
3 |
15582321 (2), 14993121 (1) |
| rsai |
52.39 |
7 |
10928224 (1), 12879219 (1), 1982109 (1), 12491092 (1) (see all 5) |
| hydroxylysine |
51.46 |
1 |
10329027 (1) |
| mspi |
38.34 |
4 |
10928224 (1), 1982109 (1), 11208313 (1) |
| apai |
29.95 |
2 |
16261459 (1) |
| oligonucleotide |
18.69 |
3 |
8418862 (1), 11920680 (1), 7556374 (1) |
| xbai |
16.76 |
2 |
12879219 (1), 11420783 (1) |
| hydroxyproline |
15.27 |
3 |
9837901 (1), 16309954 (1), 18089612 (1) |
| carbodiimide |
13.86 |
1 |
2035536 (1) |
About this table
1 PharmGKB drug compound relationship for COL1A1 gene
| Drug compound |
PharmGKB Relations |
PubMed IDs for articles supporting these relationships |
| glucocorticoids | FA   | 10321840 | About this table
|
Transcripts for COL1A1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000088
Sigma-Aldrich siRNA for COL1A1  Sigma-Aldrich shRNA Panels and shRNA for COL1A1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_000088 REFSEQ mRNAs for COL1A1 gene: NM_000088.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000088               OriGene GFP tagged cDNA clone in CMV expression vector: NM_000088                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000088                                  untagged cDNA clone in CMV expression vector: NM_000088  Additional cDNA sequence: AB032018.1 M32798.1 24/97 DOTS entries (see all 97
): DT.102841307 DT.95105014 DT.87077250 DT.95077068 DT.100662609 DT.100662592 DT.92404389 DT.95171216 DT.95123444 DT.91808350 DT.95353801 DT.95301324 DT.100788832 DT.92476449 DT.95171185 DT.102841298 DT.100775390 DT.120952850 DT.100748130 DT.100799297 DT.120952797 DT.120952848 DT.120953079 DT.100647432 24/2025 AceView cDNA sequences (see all 2025
):CA425269 BU789385 AA343290 BU617491 AA342830 BQ328512 BQ614283 BQ960697 BG012714 AA339957 AW272321 AA346509 AI753297 BG939313 AW067859 CN483830 AA301062 AI753591 AI754236 BU618113 AU118186 AW841343 W73508 AI753448
highest scoring ESTs for COL1A1:AA330962 AA346685 AA378615 AA852608 AA853395 AA853752 AI750734 AI751495 AI751537 AI751651 Unigene Clusters for COL1A1: Collagen, type I, alpha 1 Hs.172928 [show with all ESTs], Hs.681002 [show with all ESTs]Unigene Representative Sequences: Z74615, BG113870
GeneLoc Exon Structure
5/12 Alternative Splicing Database (ASD) splice patterns (SP) for COL1A1 (see all 12
)
| ExUns: | 1a | · | 1b | · | 1c | · | 1d | ^ | 2a | · | 2b | ^ | 3a | · | 3b | ^ | 4a | · | 4b | ^ | 5a | · | 5b | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13 | ^ | 14a | · | 14b | ^ | 15 | ^ | 16 | ^ | 17 | ^ | 18 | ^ | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   |
| ExUns: | 19a | · | 19b | ^ | 20a | · | 20b | ^ | 21 | ^ | 22 | ^ | 23 | ^ | 24 | ^ | 25 | ^ | 26 | ^ | 27 | ^ | 28 | ^ | 29 | ^ | 30 | ^ | 31 | ^ | 32 | ^ | 33 | ^ | 34 | ^ | 35 | ^ | 36 | ^ | 37 | ^ | 38 | ^ | 39a | · | 39b | ^ | 40 | ^ | 41 | ^ | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
| ExUns: | 42 | ^ | 43 | ^ | 44 | ^ | 45a | · | 45b | ^ | 46a | · | 46b | ^ | 47 | ^ | 48a | · | 48b | ^ | 49a | · | 49b | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for COL1A1
1 Ensembl transcript including schematic representation: ENST00000225964
|
Expression for COL1A1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| COL1A1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for COL1A1
1 / 2 / 3 11 probe-sets matching COL1A1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: --
SOURCE GeneReport for Unigene clusters: Hs.172928 Hs.681002
Expression variation in blood from EXPOLDB for COL1A1 UniProtKB/Swiss-Prot: CO1A1_HUMAN, P02452Tissue specificity: Forms the fibrils of tendon, ligaments and bones. In bones the fibrils are mineralized with calcium hydroxyapatite |
Orthologs for COL1A1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for COL1A1 gene from 5/8 species (see all 8
)
| Organism |
Gene |
Locus |
Description |
Human Similarity |
NCBI accessions |
dog (Canis familiaris) |
COL1A11 |
-- |
collagen, type I, alpha 1 |
93.33(n) 97.81(a) |
403651 NM_001003090.1 NP_001003090.1 |
chimpanzee (Pan troglodytes) |
COL1A11 |
-- |
collagen, type I, alpha 1 |
98.88(n) 99.25(a) |
455117 XM_001169320.1 XP_001169320.1 |
cow (Bos taurus) |
COL1A11 |
-- |
collagen, type I, alpha 1 |
93.6(n) 97.54(a) |
282187 NM_001034039.1 NP_001029211.1 |
rat (Rattus norvegicus) |
Col1a11 |
-- |
collagen, type I, alpha 1 |
90.16(n) 92.77(a) |
29393 XM_213440.4 XP_213440.1 |
mouse (Mus musculus) |
Col1a11, 5 |
11 (56.00 cM)5
|
collagen, type I, alpha 11, 5 |
89.58(n)1 92.43(a)1 |
128421 NM_007742.31 NP_031768.21 AK1321805 AK1580115 (see all 38) |
About this table Species with no ortholog for COL1A1
ENSEMBL Gene Tree for COL1A1 | Paralogs for COL1A1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for COL1A1 gene
- COL2A12 COL5A22
|
SNPs/Variants for COL1A1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for COL1A1 (up to first 250kb)
|
Disorders & Mutations for COL1A1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 120150 UniProtKB/Swiss-Prot: CO1A1_HUMAN, P02452
Defects in COL1A1 are the cause of Caffey disease [MIM:114000]; also known as infantile cortical hyperostosis. Caffey disease is characterized by an infantile episode of massive subperiosteal new bone formation that typically involves the diaphyses of the long bones, mandible, and clavicles. The involved bones may also appear inflamed, with painful swelling and systemic fever often accompanying the illness. The bone changes usually begin before 5 months of age and resolve before 2 years of age Defects in COL1A1 are a cause of Ehlers-Danlos syndrome type 1 (EDS1) [MIM:130000]; also known as Ehlers-Danlos syndrome gravis. EDS is a connective tissue disorder characterized by hyperextensible skin, atrophic cutaneous scars due to tissue fragility and joint hyperlaxity. EDS1 is the severe form of classic Ehlers-Danlos syndrome Defects in COL1A1 are the cause of Ehlers-Danlos syndrome type 7A (EDS7A) [MIM:130060]; also known as autosomal dominant Ehlers-Danlos syndrome type VII. EDS is a connective tissue disorder characterized by hyperextensible skin, atrophic cutaneous scars due to tissue fragility and joint hyperlaxity. EDS7A is marked by bilateral congenital hip dislocation, hyperlaxity of the joints, and recurrent partial dislocations Defects in COL1A1 are a cause of osteogenesis imperfecta type I (OI-I) [MIM:166200]. OI-I is a dominantly inherited serious newborn disease characterized by bone fragility, normal stature, little or no deformity, blue sclerae and hearing loss in 50% of families. Dentinogenesis imperfecta is rare and may distinguish a subset of OI type I (formation of dentine) Defects in COL1A1 are a cause of osteogenesis imperfecta type II (OI-II) [MIM:166210]; also known as osteogenesis imperfecta congenita. OI-II is lethal in the perinatal period and is charaterized by calvarial mineralization, beaded ribs, compressed femurs, marked long bone deformity and platyspondyly (congenital flattening of the vertebral bodies) Defects in COL1A1 are a cause of osteogenesis imperfecta type III (OI-III) [MIM:259420]; also called progressively deforming osteogenesis imperfecta with normal sclerae. OI-III is characterized by progressively deforming bones, usually with moderate deformity at birth, sclerae is variable in color, dentinogenesis imperfecta and hearing loss are common. The stature is very short Defects in COL1A1 are a cause of osteogenesis imperfecta type IV (OI-IV) [MIM:166220]. OI-IV is charaterized by normal sclerae, moderate to mild deformity and variable short stature. Dentinogenesis imperfecta is common and hearing loss occurs in some patients Genetic variations in COL1A1 are associated with susceptibility to involutional osteoporosis [MIM:166710]; also known as senile osteoporosis or postmenopausal osteoporosis. Osteoporosis is characterized by reduced bone mineral density, disrutption of bone microarchitecture, and the alteration of the amount and variety of non-collagenous proteins in bone. Osteoporotic bones are more at risk of fracture A chromosomal aberration involving COL1A1 is a cause of dermatofibrosarcoma protuberans (DFSP) [MIM:607907]. Translocation t(17;22)(q22;q13) with PDGF. DFSP is an uncommon, locally aggressive, but rarely metastasizing tumor of the deep dermis and subcutaneous tissue. It typically occurs during early or middle adult life and is most frequently located on the trunk and proximal extremities10/34 Novoseek disease relationships for COL1A1 gene (see all 34
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| osteogenesis imperfecta |
94.69 |
81 |
1967900 (2), 9752968 (2), 15241796 (2), 2220807 (2) (see all 70) |
| oi, type i |
94.04 |
54 |
8544188 (4), 10521849 (4), 11860074 (4), 18755172 (3) (see all 25) |
| osteogenesis imperfecta, type ii |
91.19 |
8 |
18996919 (1), 1460046 (1), 7487936 (1), 17508636 (1) (see all 7) |
| oi, type iv |
88.05 |
2 |
11208313 (1), 11286811 (1) |
| oi, type iii |
87.98 |
8 |
8100856 (2), 9240878 (1), 19283684 (1), 7789952 (1) (see all 6) |
| dermatofibrosarcoma protuberans |
85.00 |
16 |
12786837 (2), 16040406 (2), 16681596 (1), 17478383 (1) (see all 10) |
| dentinogenesis imperfecta |
81.28 |
1 |
11286811 (1) |
| ehlers-danlos syndrome, type i |
76.22 |
2 |
1684560 (1), 17118335 (1) |
| caffey disease |
74.56 |
4 |
18704262 (1), 15864348 (1) |
| ehlers-danlos syndrome |
73.53 |
8 |
1990839 (1), 1867198 (1), 16816023 (1), 18272325 (1) (see all 8) |
About this table
GeneTests: COL1A1 COL1A1/2-Related Osteogenesis Imperfecta Human Gene Mutation Database: COL1A1 Genetic Association Database: COL1A1 Human Genome Epidemiology Navigator: COL1A1 (118 documents)
|
Medical News for COL1A1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for COL1A1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 100/643 PubMed articles for COL1A1 gene (see all 643
):- Reduced bone density and osteoporosis associated with a polymorphic Sp1 binding site in the collagen type I alpha 1 gene. (PubMed id 8841196)1, 3, 4, 6 Grant S.F.A.... Ralston S.H. (1996)
- Structure of a full-length cDNA clone for the prepro alpha 1(I) chain of human type I procollagen. (PubMed id 3178743)2, 3, 4 Tromp G.... Prockup D.J. (1988)
- Fine structural analysis of the human pro-alpha 1 (I) collagen gene. Promoter structure, AluI repeats, and polymorphic transcripts. (PubMed id 2857713)2, 3, 4 Chu M.L....Ramirez F. (1985)
- Association between bone mineral density and polymorphisms of the VDR, ERalpha, COL1A1 and CTR genes in Spanish postmenopausal women. (PubMed id 15966503)1, 3, 6 Bandres E....Garcia-Foncillas J. (2005)
- Lack of correlation between the type of COL1A1 or COL1A2 mutation and hearing loss in osteogenesis imperfecta patients. (PubMed id 15241796)1, 3, 6 Hartikka H....Ala-Kokko L. (2004)
- Association of a COL1A1 polymorphism with lumbar disc disease in young military recruits. (PubMed id 15994869)1, 3, 6 Tilkeridis C....Stratakis C.A. (2005)
- Proposed association between the COL1A1 and COL1A2 genes and otosclerosis is not supported by a case-control study in Spain. (PubMed id 15211650)1, 3, 6 Rodriguez L....Zapata C. (2004)
- [Association analysis on the polymorphisms of PCOL2 and Sp1 binding sites of COL1A1 gene and the congenital dislocation of the hip in Chinese population] (PubMed id 15952128)1, 3, 6 Jiang J....Ji S.J. (2005)
- Analysis of the COL1A1 and COL1A2 genes by PCR amplification and scanning by conformation-sensitive gel electrophoresis identifies only COL1A1 mutations in 15 patients with osteogenesis imperfecta type I: identification of common sequences of null-allele mutations. (PubMed id 9443882)1, 3, 4 Korkko J.M....Prockop D.J. (1998)
- Association of otosclerosis with Sp1 binding site polymorphism in COL1A1 gene: evidence for a shared genetic etiology with osteoporosis. (PubMed id 15241219)1, 3, 6 McKenna M.J....Kristiansen A.G. (2004)
- Paternal mosaicism for a COL1A1 dominant mutation (alpha 1 Ser-415) causes recurrent osteogenesis imperfecta. (PubMed id 8364588)1, 3, 4 Mottes M.... Pignatti P.F. (1993)
- Osteogenesis imperfecta due to recurrent point mutations at CpG dinucleotides in the COL1A1 gene of type I collagen. (PubMed id 2037280)1, 3, 4 Pruchno C.J.... Byers P.H. (1991)
- Four new cases of lethal osteogenesis imperfecta due to glycine substitutions in COL1A1 and genes. (PubMed id 10627137)1, 3, 4 Mottes M.... Freising P. (1998)
- Osteogenesis imperfecta and type-I collagen mutations. A lethal variant caused by a Gly910-->Ala substitution in the alpha 1 (I) chain. (PubMed id 7679635)1, 3, 4 Valli M.... Cetta G. (1993)
- Mutations in the carboxyl-terminal propeptide of the pro alpha 1(I) chain of type I collagen result in defective chain association and produce lethal osteogenesis imperfecta. (PubMed id 8349697)1, 3, 4 Chessler S.D.... Byers P.H. (1993)
- Gly85 to Val substitution in pro alpha 1(I) chain causes mild osteogenesis imperfecta and introduces a susceptibility to protease digestion. (PubMed id 8223589)1, 3, 4 Valli M.... Cetta G. (1993)
- A dominant mutation in the COL1A1 gene that substitutes glycine for valine causes recurrent lethal osteogenesis imperfecta. (PubMed id 1511982)1, 3, 4 Bonaventure J.... Maroteaux P. (1992)
- A 9-base pair deletion in COL1A1 in a lethal variant of osteogenesis imperfecta. (PubMed id 1939261)1, 3, 4 Hawkins J.R.... Dalgleish R. (1991)
- A single base mutation in type I procollagen (COL1A1) that converts glycine alpha 1-541 to aspartate in a lethal variant of osteogenesis imperfecta: detection of the mutation with a carbodiimide reaction of DNA heteroduplexes and direct sequencing of products of the PCR. (PubMed id 2035536)1, 3, 4 Zhuang J.... Prockop D.J. (1991)
- Variable expression of osteogenesis imperfecta in a nuclear family is explained by somatic mosaicism for a lethal point mutation in the alpha 1(I) gene (COL1A1) of type I collagen in a parent. (PubMed id 2339700)1, 3, 4 Wallis G.A.... Byers P.H. (1990)
- Frameshift mutation near the 3' end of the COL1A1 gene of type I collagen predicts an elongated Pro alpha 1(I) chain and results in osteogenesis imperfecta type I. (PubMed id 2295701)1, 3, 4 Willing M.C.... Byers P.H. (1990)
- Osteogenesis imperfecta: mosaicism and refinement of the genotype- phenotype map in OI type III. (PubMed id 10408781)3, 4 Lund A.M.... Skovby F. (1999)
- Three novel type I collagen mutations in osteogenesis imperfecta type IV probands are associated with discrepancies between electrophoretic migration of osteoblast and fibroblast collagen. (PubMed id 9600458)3, 4 Sarafova A.P.... Marini J.C. (1998)
- (G586V) substitutions in the alpha 1 and alpha 2 chains of collagen I: effect of alpha-chain stoichiometry on the phenotype of osteogenesis imperfecta? (PubMed id 9143923)3, 4 Lund A.M.... Schwartz M. (1997)
- Serine for glycine substitutions in the C-terminal third of the alpha 1(I) chain of collagen I in five patients with nonlethal osteogenesis imperfecta. (PubMed id 9101304)3, 4 Lund A.M.... Schwartz M. (1997)
- Substitution of arginine for glycine at position 154 of the alpha 1 chain of type I collagen in a variant of osteogenesis imperfecta: comparison to previous cases with the same mutation. (PubMed id 8669434)3, 4 Zhuang J.... Prockop D.J. (1996)
- Mutation in the carboxy-terminal propeptide of the Pro alpha 1(I) chain of type I collagen in a child with severe osteogenesis imperfecta (OI type III): possible implications for protein folding. (PubMed id 8723681)3, 4 Oliver J.E.... Nicholls A.C. (1996)
- Osteogenesis imperfecta: comparison of molecular defects with bone histological changes. (PubMed id 7520724)3, 4 Sztrolovics R....Roughley P.J. (1994)
- Substitution of serine for glycine 883 in the triple helix of the pro alpha 1 (I) chain of type I procollagen produces osteogenesis imperfecta type IV and introduces a structural change in the triple helix that does not alter cleavage of the molecule by procollagen N- proteinase. (PubMed id 7982948)3, 4 Lightfoot S.J.... Kadler K.E. (1994)
- Substitution of cysteine for glycine-946 in the alpha 1(I) chain of type I procollagen causes lethal osteogenesis imperfecta. (PubMed id 7961597)3, 4 Kurosaka D.... Nagai Y. (1994)
- Severe (type III) osteogenesis imperfecta due to glycine substitutions in the central domain of the collagen triple helix. (PubMed id 7881420)3, 4 Forlino A.... Mottes M. (1994)
- Substitution of glycine-172 by arginine in the alpha 1 chain of type I collagen in a patient with osteogenesis imperfecta, type III. (PubMed id 8019571)3, 4 Mackay K.... Dalgleish R. (1994)
- Moderately severe osteogenesis imperfecta associated with substitutions of serine for glycine in the alpha 1(I) chain of type I collagen. (PubMed id 8456809)3, 4 Marini J.C.... Chen K.J. (1993)
- Chemical cleavage method for the detection of RNA base changes: experience in the application to collagen mutations in osteogenesis imperfecta. (PubMed id 8456808)3, 4 Bateman J.F....Cole W.G. (1993)
- SSCP detection of a Gly565Val substitution in the pro alpha 1(I) collagen chain resulting in osteogenesis imperfecta type II. (PubMed id 8100209)3, 4 Mackay K.... Dalgleish R. (1993)
- Serine for glycine substitutions in type I collagen in two cases of type IV osteogenesis imperfecta (OI). Additional evidence for a regional model of OI pathophysiology. (PubMed id 8094076)3, 4 Marini J.C.... Orrison B.M. (1993)
- BiP binds type I procollagen pro alpha chains with mutations in the carboxyl-terminal propeptide synthesized by cells from patients with osteogenesis imperfecta. (PubMed id 8349698)3, 4 Chessler S.D. and Byers P.H. (1993)
- A cysteine for glycine substitution at position 175 in an alpha 1 (I) chain of type I collagen produces a clinically heterogeneous form of osteogenesis imperfecta. (PubMed id 8339541)3, 4 Wirtz M.K.... Hollister D.W. (1993)
- An RT-PCR-SSCP screening strategy for detection of mutations in the gene encoding the alpha 1 chain of type I collagen: application to four patients with osteogenesis imperfecta. (PubMed id 7691343)3, 4 Mackay K.... Dalgleish R. (1993)
- An osteopenic nonfracture syndrome with features of mild osteogenesis imperfecta associated with the substitution of a cysteine for glycine at triple helix position 43 in the pro alpha 1(I) chain of type I collagen. (PubMed id 1737847)3, 4 Shapiro J.R.... Rowe D.W. (1992)
- A tripeptide deletion in the triple-helical domain of the pro alpha 1(I) chain of type I procollagen in a patient with lethal osteogenesis imperfecta does not alter cleavage of the molecule by N-proteinase. (PubMed id 1460047)3, 4 Wallis G.A.... Byers P.H. (1992)
- The clinicopathological features of three babies with osteogenesis imperfecta resulting from the substitution of glycine by valine in the pro alpha 1 (I) chain of type I procollagen. (PubMed id 1613761)3, 4 Cole W.G.... Fortune D.W. (1992)
- Mild dominant osteogenesis imperfecta with intrafamilial variability: the cause is a serine for glycine alpha 1(I) 901 substitution in a type-I collagen gene. (PubMed id 1634225)3, 4 Mottes M.... Cetta G. (1992)
- Substitution of cysteine for glycine-alpha 1-691 in the pro alpha 1(I) chain of type I procollagen in a proband with lethal osteogenesis imperfecta destabilizes the triple helix at a site C-terminal to the substitution. (PubMed id 1953667)3, 4 Steinmann B....Prockop D.J. (1991)
- Substitution of cysteine for glycine at residue 415 of one allele of the alpha 1(I) chain of type I procollagen in type III/IV osteogenesis imperfecta. (PubMed id 1770532)3, 4 Nicholls A.C.... Pope F.M. (1991)
- Osteogenesis imperfecta: translation of mutation to phenotype. (PubMed id 1895312)3, 4 Byers P.H.... Willing M.C. (1991)
- The substitution of arginine for glycine 85 of the alpha 1(I) procollagen chain results in mild osteogenesis imperfecta. The mutation provides direct evidence for three discrete domains of cooperative melting of intact type I collagen. (PubMed id 1718984)3, 4 Deak S.B.... MacKenzie J.W. (1991)
- A de novo G to T transversion in a pro-alpha 1 (I) collagen gene for a moderate case of osteogenesis imperfecta. Substitution of cysteine for glycine 178 in the triple helical domain. (PubMed id 1988452)3, 4 Valli M.... Pignatti P.F. (1991)
- Substitutions for glycine alpha 1-637 and glycine alpha 2-694 of type I procollagen in lethal osteogenesis imperfecta. The conformational strain on the triple helix introduced by a glycine substitution can be transmitted along the helix. (PubMed id 1874719)3, 4 Tsuneyoshi T.... Prockop D.J. (1991)
- Substitution of arginine for glycine at position 847 in the triple- helical domain of the alpha 1 (I) chain of type I collagen produces lethal osteogenesis imperfecta. Molecules that contain one or two abnormal chains differ in stability and secretion. (PubMed id 2211725)3, 4 Wallis G.A.... Byers P.H. (1990)
- A lethal variant of osteogenesis imperfecta has a single base mutation that substitutes cysteine for glycine 904 of the alpha 1(I) chain of type I procollagen. The asymptomatic mother has an unidentified mutation producing an overmodified and unstable type I procollagen. (PubMed id 2913053)3, 4 Constantinou C.D.... Prockop D.J. (1989)
- Osteogenesis imperfecta. The position of substitution for glycine by cysteine in the triple helical domain of the pro alpha 1(I) chains of type I collagen determines the clinical phenotype. (PubMed id 2794057)3, 4 Starman B.J.... Byers P.H. (1989)
- RNA sequence analysis of a perinatal lethal osteogenesis imperfecta mutation. (PubMed id 2470760)3, 4 Patterson E.... Bonadio J. (1989)
- Substitution of serine for alpha 1(I)-glycine 844 in a severe variant of osteogenesis imperfecta minimally destabilizes the triple helix of type I procollagen. The effects of glycine substitutions on thermal stability are either position of amino acid specific. (PubMed id 2511192)3, 4 Pack M.... Prockop D.J. (1989)
- Characterization of point mutations in the collagen COL1A1 and COL1A2 genes causing lethal perinatal osteogenesis imperfecta. (PubMed id 2777764)3, 4 Lamande S.R.... Bateman J.F. (1989)
- Osteogenesis imperfecta type IV. Detection of a point mutation in one alpha 1(I) collagen allele (COL1A1) by RNA/RNA hybrid analysis. (PubMed id 2745420)3, 4 Marini J.C.... Koeplin D.A. (1989)
- Substitution of cysteine for glycine within the carboxyl-terminal telopeptide of the alpha 1 chain of type I collagen produces mild osteogenesis imperfecta. (PubMed id 3170557)3, 4 Cohn D.H.... Byers P.H. (1988)
- Substitution of arginine for glycine 664 in the collagen alpha 1(I) chain in lethal perinatal osteogenesis imperfecta. Demonstration of the peptide defect by in vitro expression of the mutant cDNA. (PubMed id 3403550)3, 4 Bateman J.F.... Cole W.G. (1988)
- A cysteine for glycine substitution at position 1017 in an alpha 1(I) chain of type I collagen in a patient with mild dominantly inherited osteogenesis imperfecta. (PubMed id 3244312)3, 4 Labhard M.E.... Hollister D.W. (1988)
- A point mutation in a type I procollagen gene converts glycine 748 of the alpha 1 chain to cysteine and destabilizes the triple helix in a lethal variant of osteogenesis imperfecta. (PubMed id 3667599)3, 4 Vogel B.E.... Prockop D.J. (1987)
- Lethal perinatal osteogenesis imperfecta due to the substitution of arginine for glycine at residue 391 of the alpha 1(I) chain of type I collagen. (PubMed id 3108247)3, 4 Bateman J.F.... Cole W.G. (1987)
- Lethal osteogenesis imperfecta resulting from a single nucleotide change in one human pro alpha 1(I) collagen allele. (PubMed id 3016737)3, 4 Cohn D.H.... Gelinas R.E. (1986)
- Multiexon deletion in an osteogenesis imperfecta variant with increased type III collagen mRNA. (PubMed id 2981843)3, 4 Chu M.-L.... Ramirez F. (1985)
- Intron-mediated recombination may cause a deletion in an alpha 1 type I collagen chain in a lethal form of osteogenesis imperfecta. (PubMed id 3857621)3, 4 Barsh G.S.... Gelinas R.E. (1985)
- Mutation and polymorphism spectrum in osteogenesis imperfecta type II: implications for genotype-phenotype relationships. (PubMed id 18996919)1, 3 Bodian D.L....Klein T.E. (2009)
- Mutations in type I collagen genes in Japanese osteogenesis imperfecta patients. (PubMed id 17875077)1, 3 Kataoka K....Tanaka H. (2007)
- Mutational spectrum of type I collagen genes in Korean patients with osteogenesis imperfecta. (PubMed id 16705691)1, 3 Lee K.S....Koo S.K. (2006)
- [Molecular diagnosis of osteogenesis imperfecta type I] (PubMed id 19145934)1, 3 Galicka A....SredziA8ska K. (2008)
- A novel COL1A1 nonsense mutation causing osteogenesis imperfecta in a Chinese family. (PubMed id 17392686)1, 3 Liu W....Ma X. (2007)
- Association of COL1A1 and otosclerosis: evidence for a shared genetic etiology with mild osteogenesis imperfecta. (PubMed id 9752968)1, 6 McKenna M.J....Haines J.L. (1998)
- Two novel COL1A1 mutations in patients with osteogenesis imperfecta (OI) affect the stability of the collagen type I triple-helix. (PubMed id 18670065)1, 3 Witecka J....Sieron A.L. (2008)
- Defective C-propeptides of the proalpha2(I) chain of type I procollagen impede molecular assembly and result in osteogenesis imperfecta. (PubMed id 18375391)1, 3 Pace J.M....Byers P.H. (2008)
- Rieger's anomaly and other ocular abnormalities in association with osteogenesis imperfecta and a COL1A1 mutation. (PubMed id 16272059)1, 3 Nwosu B.U....Stratakis C.A. (2005)
- [Osteogenesis imperfecta Type 1: a case presentation with a new mutation in gene COL1A1] (PubMed id 15106082)1, 3 Siegert T....Schmidt H. (2004)
- COL1A1 mutation analysis in Lithuanian patients with osteogenesis imperfecta. (PubMed id 12590186)1, 3 Benusiene E. and Kucinskas V. (2003)
- Deletions and duplications of Gly-Xaa-Yaa triplet repeats in the triple helical domains of type I collagen chains disrupt helix formation and result in several types of osteogenesis imperfecta. (PubMed id 11668615)1, 3 Pace J.M....Byers P.H. (2001)
- Homology-mediated recombination between type I collagen gene exons results in an internal tandem duplication and lethal osteogenesis imperfecta. (PubMed id 8097422)1, 3 Cohn D.H.... Byers P.H. (1993)
- Bone turnover and type I collagen C-telopeptide isomerization in adult osteogenesis imperfecta: associations with collagen gene mutations. (PubMed id 19071236)3 Garnero P....Chevrel G. (2009)
- Evidence that abnormal high bone mineralization in growing children with osteogenesis imperfecta is not associated with specific collagen mutations. (PubMed id 18311573)3 Roschger P....Rauch F. (2008)
- A novel arginine-to-cysteine substitution in the triple helical region of the alpha1(I) collagen chain in a family with an osteogenesis imperfecta/Ehlers-Danlos phenotype. (PubMed id 18028452)3 Lund A....Schwartz M. (2008)
- Predicting the clinical lethality of osteogenesis imperfecta from collagen glycine mutations. (PubMed id 18412368)3 Bodian D.L....Klein T.E. (2008)
- Vitronectin and collagen I differentially regulate osteogenesis in mesenchymal stem cells. (PubMed id 16815299)3 Kundu A.K. and Putnam A.J. (2006)
- Molecular mechanism of alpha 1(I)-osteogenesis imperfecta/Ehlers-Danlos syndrome: unfolding of an N-anchor domain at the N-terminal end of the type I collagen triple helix. (PubMed id 16407265)3 Makareeva E....Leikin S. (2006)
- Mutations near amino end of alpha1(I) collagen cause combined osteogenesis imperfecta/Ehlers-Danlos syndrome by interference with N-propeptide processing. (PubMed id 15728585)3 Cabral W.A....Marini J.C. (2005)
- Gene targeting in stem cells from individuals with osteogenesis imperfecta. (PubMed id 14976317)3 Chamberlain J.R....Russell D.W. (2004)
- Disruption of one intra-chain disulphide bond in the carboxyl-terminal propeptide of the proalpha1(I) chain of type I procollagen permits slow assembly and secretion of overmodified, but stable procollagen trimers and results in mild osteogenesis imperfecta. (PubMed id 11432962)3 Pace J.M....Byers P.H. (2001)
- Three novel polymorphic sequence variants in the type I collagen gene COL1A1, the main disease locus for Osteogenesis Imperfecta. (PubMed id 11090261)3 Mirandola S....Mottes M. (2000)
- The molecular defect in an autosomal dominant form of osteogenesis imperfecta. Synthesis of type I procollagen containing cysteine in the triple-helical domain of pro-alpha 1(I) chains. (PubMed id 3722186)3 de Vries W.N. and de Wet W.J. (1986)
- Similar COL1A1 expression in fibroblasts from some patients with clinical otosclerosis and those with type I osteogenesis imperfecta. (PubMed id 11860074)1 McKenna M.J....Tropitzsch A.S. (2002)
- A novel RNA-splicing mutation in COL1A1 gene causing osteogenesis imperfecta type I in a Chinese family. (PubMed id 18755172)1 Xia X.Y....Zhou Y.C. (2008)
- A four base pair insertion polymorphism in the 3' untranslated region of the COL1A1 gene is highly informative for null-allele testing in patients with osteogenesis imperfecta type I. (PubMed id 9503369)1 Nuytinck L....De Paepe A. (1998)
- Osteogenesis imperfecta type I is commonly due to a COL1A1 null allele of type I collagen. (PubMed id 1353940)1 Willing M.C....Byers P.H. (1992)
- Strategy for prenatal diagnosis of osteogenesis imperfecta by linkage analysis to the type I collagen loci COL1A1 and COL1A2. (PubMed id 11208313)1 Benuslene E. and Kucinskas V. (2000)
- Prenatal diagnosis of osteogenesis imperfecta type I by COL1A1 null-allele testing. (PubMed id 10521849)1 Nuytinck L....De Paepe A. (1999)
- Absence of mutations in the promoter of the COL1A1 gene of type I collagen in patients with osteogenesis imperfecta type I. (PubMed id 8544188)1 Willing M.C....Deschenes S.P. (1995)
- Molecular heterogeneity in osteogenesis imperfecta type I. (PubMed id 8456806)1 Willing M.C....Byers P.H. (1993)
- Correction of a mineralization defect by overexpression of a wild-type cDNA for COL1A1 in marrow stromal cells (MSCs) from a patient with osteogenesis imperfecta: a strategy for rescuing mutations that produce dominant-negative protein defects. (PubMed id 15815702)1 Pochampally R.R....Prockop D.J. (2005)
- Tracking COL1A1 RNA in osteogenesis imperfecta. splice-defective transcripts initiate transport from the gene but are retained within the SC35 domain. (PubMed id 10931857)1 Johnson C....Lawrence J.B. (2000)
- Sequence of normal canine COL1A1 cDNA and identification of a heterozygous alpha1(I) collagen Gly208Ala mutation in a severe case of canine osteogenesis imperfecta. (PubMed id 11147834)1 Campbell B.G....Minor R.R. (2000)
- Consistent linkage of dominantly inherited osteogenesis imperfecta to the type I collagen loci: COL1A1 and COL1A2. (PubMed id 1967900)1 Sykes B....Tsipouras P. (1990)
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