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Aliases for COL18A1-AS2 Gene

Subcategory (RNA class) for COL18A1-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for COL18A1-AS2 Gene

  • COL18A1 Antisense RNA 2 2 3 5
  • COL18A1 Antisense RNA 2 (Non-Protein Coding) 2

External Ids for COL18A1-AS2 Gene

Previous GeneCards Identifiers for COL18A1-AS2 Gene

  • GC00U933234
  • GC21M046828
  • GC21M046925

Summaries for COL18A1-AS2 Gene

GeneCards Summary for COL18A1-AS2 Gene

COL18A1-AS2 (COL18A1 Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for COL18A1-AS2 Gene

Genomics for COL18A1-AS2 Gene

Regulatory Elements for COL18A1-AS2 Gene

Enhancers for COL18A1-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21F045372 0.6 ENCODE 12.5 +36.8 36811 1.0 CTCF CBX3 SUZ12 PRDM10 FOS TRIM24 NFE2 TRIM28 SETDB1 COL18A1 COL18A1-AS2 MTCO1P3 LOC105372839
GH21F045347 1.2 FANTOM5 Ensembl ENCODE 12.3 +60.9 60876 3.2 PKNOX1 ZNF48 ZNF121 GLIS2 ZNF366 ZNF416 EGR2 ZEB2 NR2F2 ZFP69B COL18A1 ENSG00000228137 MCM3AP MTCO1P3 ENSG00000228355 COL18A1-AS2 ENSG00000227438 ENSG00000215447 MCM3AP-AS1 LOC105372839
GH21F045316 1.3 FANTOM5 Ensembl ENCODE 12.2 +85.6 85617 15.0 HDGF PKNOX1 MLX ZFP64 ARID4B SIN3A DMAP1 SLC30A9 ZNF143 FOS COL18A1 MTCO1P3 ENSG00000228355 ENSG00000215447 POFUT2 COL18A1-AS2 LINC00315 MCM3AP-AS1 TRPM2 LINC00205
GH21F045093 1.2 Ensembl ENCODE 10.3 +315.3 315265 3.6 ZNF263 ZNF362 CBX3 MAX RAD21 POLR2A EED NR2F6 MYC TRIM28 COL18A1-AS2 COL18A1 SSR4P1 TSPEAR-AS1 LINC00315 LOC105372835
GH21F045091 0.6 Ensembl 10.3 +318.1 318065 1.2 ZFHX2 ZIC2 EGR2 COL18A1-AS2 COL18A1 LINC00315 TSPEAR-AS1 LOC105372835 SSR4P1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around COL18A1-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Location for COL18A1-AS2 Gene

Chromosome:
21
Start:
45,407,386 bp from pter
End:
45,410,065 bp from pter
Size:
2,680 bases
Orientation:
Minus strand

Genomic View for COL18A1-AS2 Gene

Genes around COL18A1-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
COL18A1-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for COL18A1-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for COL18A1-AS2 Gene

Proteins for COL18A1-AS2 Gene

Post-translational modifications for COL18A1-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for COL18A1-AS2 Gene

Domains & Families for COL18A1-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for COL18A1-AS2 Gene

Function for COL18A1-AS2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for COL18A1-AS2 Gene

Localization for COL18A1-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for COL18A1-AS2 Gene

Pathways & Interactions for COL18A1-AS2 Gene

SuperPathways for COL18A1-AS2 Gene

No Data Available

Interacting Proteins for COL18A1-AS2 Gene

Gene Ontology (GO) - Biological Process for COL18A1-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for COL18A1-AS2 Gene

Transcripts for COL18A1-AS2 Gene

mRNA/cDNA for COL18A1-AS2 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for COL18A1-AS2 Gene

COL18A1 antisense RNA 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for COL18A1-AS2 Gene

No ASD Table

Relevant External Links for COL18A1-AS2 Gene

GeneLoc Exon Structure for
COL18A1-AS2
ECgene alternative splicing isoforms for
COL18A1-AS2

Expression for COL18A1-AS2 Gene

mRNA expression in normal human tissues for COL18A1-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for COL18A1-AS2 Gene

This gene is overexpressed in Liver (x5.6) and Brain - Cortex (x4.5).

SOURCE GeneReport for Unigene cluster for COL18A1-AS2 Gene:

Hs.589901
genes like me logo Genes that share expression patterns with COL18A1-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for COL18A1-AS2 Gene

Orthologs for COL18A1-AS2 Gene

Evolution for COL18A1-AS2 Gene

ENSEMBL:
Gene Tree for COL18A1-AS2 (if available)
TreeFam:
Gene Tree for COL18A1-AS2 (if available)

No data available for Orthologs for COL18A1-AS2 Gene

Paralogs for COL18A1-AS2 Gene

No data available for Paralogs for COL18A1-AS2 Gene

Variants for COL18A1-AS2 Gene

Sequence variations from dbSNP and Humsavar for COL18A1-AS2 Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type
rs1004133 -- 45,412,007(+) GGAAC(A/G)TGGCG intron-variant, upstream-variant-2KB
rs11089001 -- 45,409,447(+) GGGCT(C/T)GGGTG intron-variant
rs111258613 -- 45,411,816(+) GGCCT(C/T)GCTTC intron-variant, upstream-variant-2KB
rs111353192 -- 45,407,422(+) ATGCT(C/G)AGGTT intron-variant, nc-transcript-variant, upstream-variant-2KB
rs112009326 -- 45,411,855(+) TCTGC(A/G)GCCCA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for COL18A1-AS2 Gene

Variant ID Type Subtype PubMed ID
dgv4436n100 CNV gain 25217958
dgv537n27 CNV gain 19166990
dgv7899n54 CNV gain 21841781
dgv7900n54 CNV gain 21841781
esv2762114 CNV gain 21179565
nsv1057607 CNV gain 25217958
nsv470909 CNV gain 18288195
nsv520123 CNV gain 19592680
nsv953653 CNV deletion 24416366

Relevant External Links for COL18A1-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
COL18A1-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for COL18A1-AS2 Gene

Disorders for COL18A1-AS2 Gene

Relevant External Links for COL18A1-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
COL18A1-AS2

No disorders were found for COL18A1-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for COL18A1-AS2 Gene

Publications for COL18A1-AS2 Gene

No publications were found for COL18A1-AS2 Gene.

Products for COL18A1-AS2 Gene

Sources for COL18A1-AS2 Gene

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