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Aliases for COL18A1-AS1 Gene

Subcategory (RNA class) for COL18A1-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for COL18A1-AS1 Gene

  • COL18A1 Antisense RNA 1 2 3
  • COL18A1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Chromosome 21 Open Reading Frame 123 2
  • Non-Protein Coding RNA 175 2
  • NCRNA00175 3
  • C21orf123 3
  • PRED80 3

External Ids for COL18A1-AS1 Gene

ORGUL Members for COL18A1-AS1 Gene

Previous Symbols for COL18A1-AS1 Gene

  • C21orf123
  • NCRNA00175

Summaries for COL18A1-AS1 Gene

GeneCards Summary for COL18A1-AS1 Gene

COL18A1-AS1 (COL18A1 Antisense RNA 1) is a RNA Gene, and belongs to antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for COL18A1-AS1 Gene

Genomics for COL18A1-AS1 Gene

Genomic Location for COL18A1-AS1 Gene

Start:
45,419,716 bp from pter
End:
45,425,070 bp from pter
Size:
5,355 bases
Orientation:
Minus strand

Genomic View for COL18A1-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for COL18A1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for COL18A1-AS1 Gene

No data available for Regulatory Elements for COL18A1-AS1 Gene

Proteins for COL18A1-AS1 Gene

Post-translational modifications for COL18A1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for COL18A1-AS1 Gene

Domains for COL18A1-AS1 Gene

Gene Families for COL18A1-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs
genes like me logo Genes that share domains with COL18A1-AS1: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for COL18A1-AS1 Gene

Function for COL18A1-AS1 Gene

Phenotypes for COL18A1-AS1 Gene

GenomeRNAi human phenotypes for COL18A1-AS1:
genes like me logo Genes that share phenotypes with COL18A1-AS1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for COL18A1-AS1 Gene

Localization for COL18A1-AS1 Gene

No data available for Gene Ontology (GO) - Cellular Components for COL18A1-AS1 Gene

Pathways for COL18A1-AS1 Gene

SuperPathways for COL18A1-AS1 Gene

No Data Available

Interacting Proteins for COL18A1-AS1 Gene

Gene Ontology (GO) - Biological Process for COL18A1-AS1 Gene

None

No data available for Pathways by source for COL18A1-AS1 Gene

Transcripts for COL18A1-AS1 Gene

mRNA/cDNA for COL18A1-AS1 Gene

(1) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for COL18A1-AS1 Gene

COL18A1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for COL18A1-AS1 Gene

No ASD Table

Relevant External Links for COL18A1-AS1 Gene

GeneLoc Exon Structure for
COL18A1-AS1
ECgene alternative splicing isoforms for
COL18A1-AS1

Expression for COL18A1-AS1 Gene

mRNA expression in normal human tissues for COL18A1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for COL18A1-AS1 Gene

This gene is overexpressed in Kidney - Cortex (13.2) and Pituitary (4.5).

SOURCE GeneReport for Unigene cluster for COL18A1-AS1 Gene Hs.517353

genes like me logo Genes that share expressions with COL18A1-AS1: view

Orthologs for COL18A1-AS1 Gene

Evolution for COL18A1-AS1 Gene

ENSEMBL:
Gene Tree for COL18A1-AS1 (if available)
TreeFam:
Gene Tree for COL18A1-AS1 (if available)

No data available for Orthologs for COL18A1-AS1 Gene

Paralogs for COL18A1-AS1 Gene

No data available for Paralogs for COL18A1-AS1 Gene

Variants for COL18A1-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for COL18A1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv4785n71 CNV Loss 21882294
nsv914009 CNV Loss 21882294
dgv4788n71 CNV Loss 21882294
dgv537n27 CNV Gain 19166990
nsv470909 CNV Gain 18288195
nsv914027 CNV Loss 21882294
nsv914029 CNV Loss 21882294
dgv4791n71 CNV Loss 21882294
dgv4792n71 CNV Loss 21882294
dgv4793n71 CNV Loss 21882294
dgv4794n71 CNV Loss 21882294
nsv516407 CNV Loss 19592680
nsv914048 CNV Loss 21882294
nsv834111 CNV Loss 17160897

Relevant External Links for COL18A1-AS1 Gene

HapMap Linkage Disequilibrium report
COL18A1-AS1

No data available for Sequence variations from dbSNP and Humsavar for COL18A1-AS1 Gene

Disorders for COL18A1-AS1 Gene

No disorders were found for COL18A1-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for COL18A1-AS1 Gene

Publications for COL18A1-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3
  4. Functional analysis and identification of cis-regulatory elements of human chromosome 21 gene promoters. (PMID: 20494980) Warnatz H.J. … Yaspo M.L. (Nucleic Acids Res. 2010) 3
  5. Multiple loci influencing hippocampal degeneration identified by genome scan. (PMID: 22745009) Melville S.A. … Farrer L.A. (Ann. Neurol. 2012) 3

Products for COL18A1-AS1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate COL18A1-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for COL18A1-AS1
    • Block miRNA regulation of COL18A1-AS1 using miScript Target Protectors

    Sources for COL18A1-AS1 Gene

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