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Aliases for COL18A1-AS1 Gene

Subcategory (RNA class) for COL18A1-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for COL18A1-AS1 Gene

  • COL18A1 Antisense RNA 1 2 3
  • COL18A1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Chromosome 21 Open Reading Frame 123 2
  • Non-Protein Coding RNA 175 2
  • NCRNA00175 3
  • C21orf123 3
  • PRED80 3

External Ids for COL18A1-AS1 Gene

ORGUL Members for COL18A1-AS1 Gene

Previous HGNC Symbols for COL18A1-AS1 Gene

  • C21orf123
  • NCRNA00175

Previous GeneCards Identifiers for COL18A1-AS1 Gene

  • GC21M046840
  • GC21M046942

Summaries for COL18A1-AS1 Gene

GeneCards Summary for COL18A1-AS1 Gene

COL18A1-AS1 (COL18A1 Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for COL18A1-AS1 Gene

Genomics for COL18A1-AS1 Gene

Genomic Location for COL18A1-AS1 Gene

Start:
45,419,716 bp from pter
End:
45,425,070 bp from pter
Size:
5,355 bases
Orientation:
Minus strand

Genomic View for COL18A1-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for COL18A1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for COL18A1-AS1 Gene

No data available for Regulatory Elements for COL18A1-AS1 Gene

Proteins for COL18A1-AS1 Gene

Post-translational modifications for COL18A1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for COL18A1-AS1 Gene

Domains for COL18A1-AS1 Gene

Gene Families for COL18A1-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with COL18A1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for COL18A1-AS1 Gene

Function for COL18A1-AS1 Gene

Phenotypes for COL18A1-AS1 Gene

GenomeRNAi human phenotypes for COL18A1-AS1:
genes like me logo Genes that share phenotypes with COL18A1-AS1: view

Animal Model Products

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate COL18A1-AS1
    • Block miRNA regulation of COL18A1-AS1 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for COL18A1-AS1

    In Situ Assay Products

    Flow Cytometry Products

    No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for COL18A1-AS1 Gene

    Localization for COL18A1-AS1 Gene

    No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for COL18A1-AS1 Gene

    Pathways for COL18A1-AS1 Gene

    SuperPathways for COL18A1-AS1 Gene

    No Data Available

    Interacting Proteins for COL18A1-AS1 Gene

    Gene Ontology (GO) - Biological Process for COL18A1-AS1 Gene

    None

    No data available for Pathways by source for COL18A1-AS1 Gene

    Transcripts for COL18A1-AS1 Gene

    mRNA/cDNA for COL18A1-AS1 Gene

    (5) Additional mRNA sequences :
    (1) REFSEQ mRNAs :
    (2) Selected AceView cDNA sequences:
    (4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

    Unigene Clusters for COL18A1-AS1 Gene

    COL18A1 antisense RNA 1:
    Representative Sequences:

    miRNA Products

    • QIAGEN qRT-PCR Assays for microRNAs that regulate COL18A1-AS1
      • Block miRNA regulation of COL18A1-AS1 using miScript Target Protectors

      Inhibitory RNA Products

      • Predesigned siRNA for gene silencing in human,mouse,rat for COL18A1-AS1

      Primer Products

      • OriGene qSTAR qPCR primer pairs in human,mouse,rat for COL18A1-AS1
      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat

      Flow Cytometry Products

      Alternative Splicing Database (ASD) splice patterns (SP) for COL18A1-AS1 Gene

      No ASD Table

      Relevant External Links for COL18A1-AS1 Gene

      GeneLoc Exon Structure for
      COL18A1-AS1
      ECgene alternative splicing isoforms for
      COL18A1-AS1

      Expression for COL18A1-AS1 Gene

      mRNA expression in normal human tissues for COL18A1-AS1 Gene

      mRNA differential expression in normal tissues according to GTEx for COL18A1-AS1 Gene

      This gene is overexpressed in Kidney - Cortex (13.2) and Pituitary (4.5).

      SOURCE GeneReport for Unigene cluster for COL18A1-AS1 Gene Hs.517353

      genes like me logo Genes that share expressions with COL18A1-AS1: view

      In Situ Assay Products

      No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for COL18A1-AS1 Gene

      Orthologs for COL18A1-AS1 Gene

      Evolution for COL18A1-AS1 Gene

      ENSEMBL:
      Gene Tree for COL18A1-AS1 (if available)
      TreeFam:
      Gene Tree for COL18A1-AS1 (if available)

      No data available for Orthologs for COL18A1-AS1 Gene

      Paralogs for COL18A1-AS1 Gene

      No data available for Paralogs for COL18A1-AS1 Gene

      Variants for COL18A1-AS1 Gene

      Structural Variations from Database of Genomic Variants (DGV) for COL18A1-AS1 Gene

      Variant ID Type Subtype PubMed ID
      dgv4785n71 CNV Loss 21882294
      nsv914009 CNV Loss 21882294
      dgv4788n71 CNV Loss 21882294
      dgv537n27 CNV Gain 19166990
      nsv470909 CNV Gain 18288195
      nsv914027 CNV Loss 21882294
      nsv914029 CNV Loss 21882294
      dgv4791n71 CNV Loss 21882294
      dgv4792n71 CNV Loss 21882294
      dgv4793n71 CNV Loss 21882294
      dgv4794n71 CNV Loss 21882294
      nsv516407 CNV Loss 19592680
      nsv914048 CNV Loss 21882294
      nsv834111 CNV Loss 17160897

      Relevant External Links for COL18A1-AS1 Gene

      HapMap Linkage Disequilibrium report
      COL18A1-AS1

      No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for COL18A1-AS1 Gene

      Disorders for COL18A1-AS1 Gene

      No disorders were found for COL18A1-AS1 Gene.

      No data available for UniProtKB/Swiss-Prot for COL18A1-AS1 Gene

      Publications for COL18A1-AS1 Gene

      1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
      2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
      3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3
      4. Functional analysis and identification of cis-regulatory elements of human chromosome 21 gene promoters. (PMID: 20494980) Warnatz H.J. … Yaspo M.L. (Nucleic Acids Res. 2010) 3
      5. Multiple loci influencing hippocampal degeneration identified by genome scan. (PMID: 22745009) Melville S.A. … Farrer L.A. (Ann. Neurol. 2012) 3

      Products for COL18A1-AS1 Gene

      • QIAGEN qRT-PCR Assays for microRNAs that regulate COL18A1-AS1
        • QuantiTect SYBR Green Assays in human,mouse,rat
        • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
        • QuantiFast Probe-based Assays in human,mouse,rat
        • Predesigned siRNA for gene silencing in human,mouse,rat for COL18A1-AS1
        • Block miRNA regulation of COL18A1-AS1 using miScript Target Protectors

        Sources for COL18A1-AS1 Gene

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