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Aliases for COL18A1-AS1 Gene

Subcategory (RNA class) for COL18A1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for COL18A1-AS1 Gene

  • COL18A1 Antisense RNA 1 2 3 5
  • COL18A1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Chromosome 21 Open Reading Frame 123 2
  • Non-Protein Coding RNA 175 2
  • NCRNA00175 3
  • C21orf123 3
  • PRED80 3

External Ids for COL18A1-AS1 Gene

Previous HGNC Symbols for COL18A1-AS1 Gene

  • C21orf123
  • NCRNA00175

Previous GeneCards Identifiers for COL18A1-AS1 Gene

  • GC21M046840
  • GC21M046942

Summaries for COL18A1-AS1 Gene

GeneCards Summary for COL18A1-AS1 Gene

COL18A1-AS1 (COL18A1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for COL18A1-AS1 Gene

Genomics for COL18A1-AS1 Gene

Regulatory Elements for COL18A1-AS1 Gene

Enhancers for COL18A1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21F046078 1.1 FANTOM5 Ensembl ENCODE 6.9 -656.4 -656435 6.2 ZNF146 SUZ12 MAX SIN3A ZNF48 ZIC2 FOS MCM3 BHLHE40 MNT ENSG00000227438 PSMA6P3 COL18A1-AS1 SPATC1L FTCD COL6A1 COL6A2 PIR33401
GH21F045420 1.2 Ensembl ENCODE 0.8 +3.8 3785 2.4 ZSCAN5A HDGF ZNF687 RFX1 NFIA DPF2 ZNF592 PRDM2 ZNF791 HSF1 MCM3AP ENSG00000227438 ENSG00000228137 LOC105372842 COL18A1 COL18A1-AS1 COL18A1-AS2
GH21F045426 1 Ensembl ENCODE 0.8 -2.6 -2579 2.0 PKNOX1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF48 SLC30A9 ZNF207 FOS ENSG00000228355 MTCO1P3 COL18A1 PTTG1IP COL18A1-AS1 GC21M045342
GH21F045423 0.5 ENCODE 0.8 +0.7 662 2.7 SOX13 TFAP4 SAP130 MLX ARID4B THRB RARA GLIS2 POLR2A NR2F6 ENSG00000228355 MTCO1P3 COL18A1 PTTG1IP FTCD COL18A1-AS1 COL18A1-AS2
GH21F045429 1.2 Ensembl ENCODE 0.4 -6.9 -6854 5.2 MLX ARID4B DMAP1 ZNF48 FOS SP5 ZHX2 JUNB MIER2 PPARG COL18A1 MCM3AP-AS1 ENSG00000228355 MTCO1P3 ENSG00000215447 ENSG00000228137 ENSG00000239415 PTTG1IP GC21M045342 COL18A1-AS1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around COL18A1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for COL18A1-AS1 Gene

Chromosome:
21
Start:
45,419,716 bp from pter
End:
45,425,070 bp from pter
Size:
5,355 bases
Orientation:
Minus strand

Genomic View for COL18A1-AS1 Gene

Genes around COL18A1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
COL18A1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for COL18A1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for COL18A1-AS1 Gene

Proteins for COL18A1-AS1 Gene

Post-translational modifications for COL18A1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for COL18A1-AS1 Gene

Domains & Families for COL18A1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for COL18A1-AS1 Gene

Function for COL18A1-AS1 Gene

genes like me logo Genes that share phenotypes with COL18A1-AS1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for COL18A1-AS1 Gene

Localization for COL18A1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for COL18A1-AS1 Gene

Pathways & Interactions for COL18A1-AS1 Gene

SuperPathways for COL18A1-AS1 Gene

No Data Available

Interacting Proteins for COL18A1-AS1 Gene

Gene Ontology (GO) - Biological Process for COL18A1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for COL18A1-AS1 Gene

Transcripts for COL18A1-AS1 Gene

mRNA/cDNA for COL18A1-AS1 Gene

(1) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for COL18A1-AS1 Gene

COL18A1 antisense RNA 1:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for COL18A1-AS1 Gene

No ASD Table

Relevant External Links for COL18A1-AS1 Gene

GeneLoc Exon Structure for
COL18A1-AS1
ECgene alternative splicing isoforms for
COL18A1-AS1

Expression for COL18A1-AS1 Gene

mRNA expression in normal human tissues for COL18A1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for COL18A1-AS1 Gene

This gene is overexpressed in Kidney - Cortex (x13.2) and Pituitary (x4.5).

SOURCE GeneReport for Unigene cluster for COL18A1-AS1 Gene:

Hs.517353
genes like me logo Genes that share expression patterns with COL18A1-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for COL18A1-AS1 Gene

Orthologs for COL18A1-AS1 Gene

Evolution for COL18A1-AS1 Gene

ENSEMBL:
Gene Tree for COL18A1-AS1 (if available)
TreeFam:
Gene Tree for COL18A1-AS1 (if available)

No data available for Orthologs for COL18A1-AS1 Gene

Paralogs for COL18A1-AS1 Gene

No data available for Paralogs for COL18A1-AS1 Gene

Variants for COL18A1-AS1 Gene

Sequence variations from dbSNP and Humsavar for COL18A1-AS1 Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type
rs111270417 -- 45,426,934(+) CGGGG(G/T)TGCCG intron-variant, upstream-variant-2KB
rs111384117 -- 45,422,526(+) CACCT(C/T)GCGCC intron-variant, nc-transcript-variant
rs111441036 -- 45,424,159(+) CTCCC(A/G)CAGTG intron-variant, nc-transcript-variant
rs111609537 -- 45,424,646(+) TGTGA(A/C)CTGAC intron-variant, nc-transcript-variant
rs111622822 -- 45,426,976(+) TCTCA(C/G)CCCTG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for COL18A1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv4436n100 CNV gain 25217958
dgv537n27 CNV gain 19166990
dgv7899n54 CNV gain 21841781
dgv7900n54 CNV gain 21841781
esv2762114 CNV gain 21179565
nsv1057607 CNV gain 25217958
nsv470909 CNV gain 18288195
nsv516407 CNV loss 19592680
nsv834111 CNV loss 17160897
nsv953653 CNV deletion 24416366

Relevant External Links for COL18A1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
COL18A1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for COL18A1-AS1 Gene

Disorders for COL18A1-AS1 Gene

Relevant External Links for COL18A1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
COL18A1-AS1

No disorders were found for COL18A1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for COL18A1-AS1 Gene

Publications for COL18A1-AS1 Gene

  1. Multiple loci influencing hippocampal degeneration identified by genome scan. (PMID: 22745009) Melville S.A. … Farrer L.A. (Ann. Neurol. 2012) 3 64
  2. Functional analysis and identification of cis-regulatory elements of human chromosome 21 gene promoters. (PMID: 20494980) Warnatz H.J. … Yaspo M.L. (Nucleic Acids Res. 2010) 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for COL18A1-AS1 Gene

Sources for COL18A1-AS1 Gene

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