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Aliases for COL18A1-AS1 Gene

Subcategory (RNA class) for COL18A1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for COL18A1-AS1 Gene

  • COL18A1 Antisense RNA 1 2 3 5
  • COL18A1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Chromosome 21 Open Reading Frame 123 2
  • Non-Protein Coding RNA 175 2
  • NCRNA00175 3
  • C21orf123 3
  • PRED80 3

External Ids for COL18A1-AS1 Gene

Previous HGNC Symbols for COL18A1-AS1 Gene

  • C21orf123
  • NCRNA00175

Previous GeneCards Identifiers for COL18A1-AS1 Gene

  • GC21M046840
  • GC21M046942

Summaries for COL18A1-AS1 Gene

GeneCards Summary for COL18A1-AS1 Gene

COL18A1-AS1 (COL18A1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for COL18A1-AS1 Gene

Genomics for COL18A1-AS1 Gene

Regulatory Elements for COL18A1-AS1 Gene

Enhancers for COL18A1-AS1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around COL18A1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for COL18A1-AS1 Gene

Chromosome:
21
Start:
45,419,716 bp from pter
End:
45,425,070 bp from pter
Size:
5,355 bases
Orientation:
Minus strand

Genomic View for COL18A1-AS1 Gene

Genes around COL18A1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
COL18A1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for COL18A1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for COL18A1-AS1 Gene

Proteins for COL18A1-AS1 Gene

Post-translational modifications for COL18A1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for COL18A1-AS1 Gene

Domains & Families for COL18A1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for COL18A1-AS1 Gene

Function for COL18A1-AS1 Gene

genes like me logo Genes that share phenotypes with COL18A1-AS1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for COL18A1-AS1 Gene

Localization for COL18A1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for COL18A1-AS1 Gene

Pathways & Interactions for COL18A1-AS1 Gene

SuperPathways for COL18A1-AS1 Gene

No Data Available

Interacting Proteins for COL18A1-AS1 Gene

Gene Ontology (GO) - Biological Process for COL18A1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for COL18A1-AS1 Gene

Drugs & Compounds for COL18A1-AS1 Gene

No Compound Related Data Available

Transcripts for COL18A1-AS1 Gene

mRNA/cDNA for COL18A1-AS1 Gene

(1) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for COL18A1-AS1 Gene

COL18A1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for COL18A1-AS1 Gene

No ASD Table

Relevant External Links for COL18A1-AS1 Gene

GeneLoc Exon Structure for
COL18A1-AS1
ECgene alternative splicing isoforms for
COL18A1-AS1

Expression for COL18A1-AS1 Gene

mRNA expression in normal human tissues for COL18A1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for COL18A1-AS1 Gene

This gene is overexpressed in Kidney - Cortex (x13.2) and Pituitary (x4.5).

SOURCE GeneReport for Unigene cluster for COL18A1-AS1 Gene Hs.517353

genes like me logo Genes that share expression patterns with COL18A1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for COL18A1-AS1 Gene

Orthologs for COL18A1-AS1 Gene

Evolution for COL18A1-AS1 Gene

ENSEMBL:
Gene Tree for COL18A1-AS1 (if available)
TreeFam:
Gene Tree for COL18A1-AS1 (if available)

No data available for Orthologs for COL18A1-AS1 Gene

Paralogs for COL18A1-AS1 Gene

No data available for Paralogs for COL18A1-AS1 Gene

Variants for COL18A1-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for COL18A1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv4785n71 CNV Loss 21882294
nsv914009 CNV Loss 21882294
dgv4788n71 CNV Loss 21882294
dgv537n27 CNV Gain 19166990
nsv470909 CNV Gain 18288195
nsv914027 CNV Loss 21882294
nsv914029 CNV Loss 21882294
dgv4791n71 CNV Loss 21882294
dgv4792n71 CNV Loss 21882294
dgv4793n71 CNV Loss 21882294
dgv4794n71 CNV Loss 21882294
nsv516407 CNV Loss 19592680
nsv914048 CNV Loss 21882294
nsv834111 CNV Loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Variation tolerance and Relevant External Links for COL18A1-AS1 Gene

Disorders for COL18A1-AS1 Gene

Relevant External Links for COL18A1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
COL18A1-AS1

No disorders were found for COL18A1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for COL18A1-AS1 Gene

Publications for COL18A1-AS1 Gene

  1. Multiple loci influencing hippocampal degeneration identified by genome scan. (PMID: 22745009) Melville S.A. … Farrer L.A. (Ann. Neurol. 2012) 3 67
  2. Functional analysis and identification of cis-regulatory elements of human chromosome 21 gene promoters. (PMID: 20494980) Warnatz H.J. … Yaspo M.L. (Nucleic Acids Res. 2010) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for COL18A1-AS1 Gene

Sources for COL18A1-AS1 Gene

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