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Aliases for COL14A1 Gene

Aliases for COL14A1 Gene

  • Collagen Type XIV Alpha 1 Chain 2 3 5
  • Collagen, Type XIV, Alpha 1 2 3
  • Undulin 2 4
  • UND 3 4
  • Undulin (Fibronectin-Tenascin-Related) 3
  • Collagen Alpha-1(XIV) Chain 3

External Ids for COL14A1 Gene

Previous HGNC Symbols for COL14A1 Gene

  • UND

Previous GeneCards Identifiers for COL14A1 Gene

  • GC08P120129
  • GC08P121129
  • GC08P120740
  • GC08P121028
  • GC08P121093
  • GC08P121188
  • GC08P116458

Summaries for COL14A1 Gene

Entrez Gene Summary for COL14A1 Gene

  • This gene encodes the alpha chain of type XIV collagen, a member of the FACIT (fibril-associated collagens with interrupted triple helices) collagen family. Type XIV collagen interacts with the fibril surface and is involved in the regulation of fibrillogenesis. [provided by RefSeq, Jan 2013]

GeneCards Summary for COL14A1 Gene

COL14A1 (Collagen Type XIV Alpha 1 Chain) is a Protein Coding gene. Diseases associated with COL14A1 include Keratoderma, Palmoplantar, Punctate Type Ia and Punctate Palmoplantar Keratoderma. Among its related pathways are Collagen chain trimerization and Phospholipase-C Pathway. GO annotations related to this gene include poly(A) RNA binding and extracellular matrix structural constituent. An important paralog of this gene is COL12A1.

UniProtKB/Swiss-Prot for COL14A1 Gene

  • Plays an adhesive role by integrating collagen bundles. It is probably associated with the surface of interstitial collagen fibrils via COL1. The COL2 domain may then serve as a rigid arm which sticks out from the fibril and protrudes the large N-terminal globular domain into the extracellular space, where it might interact with other matrix molecules or cell surface receptors (By similarity).

Gene Wiki entry for COL14A1 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for COL14A1 Gene

Genomics for COL14A1 Gene

Regulatory Elements for COL14A1 Gene

Enhancers for COL14A1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G119981 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.4 -77.1 -77133 3.8 PKNOX1 NFIB SIN3A RAD21 ZBTB7B ZNF366 RCOR1 FOS CEBPB USF2 DEPTOR COL14A1 DSCC1 ENSG00000254343 ENSG00000245330 GC08M119936 GC08P120015
GH08G119968 1.4 Ensembl ENCODE dbSUPER 11.4 -85.5 -85512 11.1 HDGF PKNOX1 FOXA2 ZFP64 FEZF1 RAD21 RFX5 YY1 ZNF121 HSF1 DEPTOR TAF2 COL14A1 MTBP DSCC1 ENSG00000254343 ENSG00000245330 GC08M119936 GC08P120015
GH08G119892 1.2 Ensembl ENCODE dbSUPER 10.9 -166.7 -166651 2.0 ZNF680 MAFG SREBF1 PRDM6 ZNF316 MAFF ZSCAN5C FOXP2 PRDM10 FOS DSCC1 ENSG00000245330 COL14A1 TAF2 RNA5SP277 GC08M119893 PIR41964
GH08G119990 1.2 Ensembl ENCODE dbSUPER 10.9 -68.8 -68800 1.3 JUN INSM2 FEZF1 CEBPG ZNF366 ZSCAN5C ZNF10 ZEB2 TSHZ1 ZNF843 DEPTOR COL14A1 ENSG00000245330 DSCC1 GC08P120015 GC08M119936
GH08G119980 1 ENCODE dbSUPER 11.4 -79.4 -79405 0.2 CTCF CBX3 USF1 CREB3L1 MAX ZNF644 ZNF2 RAD21 YY1 ZNF366 COL14A1 DSCC1 GC08M119936 GC08P120015
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around COL14A1 on UCSC Golden Path with GeneCards custom track

Genomic Location for COL14A1 Gene

Chromosome:
8
Start:
120,059,780 bp from pter
End:
120,373,573 bp from pter
Size:
313,794 bases
Orientation:
Plus strand

Genomic View for COL14A1 Gene

Genes around COL14A1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
COL14A1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for COL14A1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for COL14A1 Gene

Proteins for COL14A1 Gene

  • Protein details for COL14A1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q05707-COEA1_HUMAN
    Recommended name:
    Collagen alpha-1(XIV) chain
    Protein Accession:
    Q05707
    Secondary Accessions:
    • B2RU07
    • O00260
    • O00261
    • O00262
    • Q05708
    • Q5XJ18
    • Q96C67
    • Q9UDF6

    Protein attributes for COL14A1 Gene

    Size:
    1796 amino acids
    Molecular mass:
    193515 Da
    Quaternary structure:
    • Homotrimer.
    SequenceCaution:
    • Sequence=AAA36795.1; Type=Miscellaneous discrepancy; Evidence={ECO:0000305}; Sequence=AAH14640.1; Type=Frameshift; Positions=1047; Evidence={ECO:0000305};

    Alternative splice isoforms for COL14A1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for COL14A1 Gene

Post-translational modifications for COL14A1 Gene

  • Lysines at the third position of the tripeptide repeating unit (G-X-Y) are hydroxylated in all cases and bind carbohydrates.
  • May contain numerous cysteine residues involved in inter- and intramolecular disulfide bonding.
  • Prolines at the third position of the tripeptide repeating unit (G-X-Y) are hydroxylated in some or all of the chains.
  • Glycosylation at posLast=9494, Asn137, Asn372, Thr643, posLast=13841384, posLast=13881388, Lys1476, Lys1485, posLast=15231523, Lys1526, posLast=16011601, Lys1698, and posLast=17011701
  • Modification sites at PhosphoSitePlus

Antibody Products

  • Cloud-Clone Corp. Antibodies for COL14A1
  • Santa Cruz Biotechnology (SCBT) Antibodies for COL14A1

No data available for DME Specific Peptides for COL14A1 Gene

Domains & Families for COL14A1 Gene

Gene Families for COL14A1 Gene

Suggested Antigen Peptide Sequences for COL14A1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q05707

UniProtKB/Swiss-Prot:

COEA1_HUMAN :
  • Belongs to the fibril-associated collagens with interrupted helices (FACIT) family.
Family:
  • Belongs to the fibril-associated collagens with interrupted helices (FACIT) family.
genes like me logo Genes that share domains with COL14A1: view

Function for COL14A1 Gene

Molecular function for COL14A1 Gene

GENATLAS Biochemistry:
collagen,type XIV,alpha 1,fibril-associated collagen with interrupted triple helices (FACIT) homotrimerizing,expressed in extracellular matrix,related to collagen type XIV,involved in supramolecular organization of fibril bundles
UniProtKB/Swiss-Prot Function:
Plays an adhesive role by integrating collagen bundles. It is probably associated with the surface of interstitial collagen fibrils via COL1. The COL2 domain may then serve as a rigid arm which sticks out from the fibril and protrudes the large N-terminal globular domain into the extracellular space, where it might interact with other matrix molecules or cell surface receptors (By similarity).

Gene Ontology (GO) - Molecular Function for COL14A1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003723 RNA binding IDA 22658674
GO:0005201 extracellular matrix structural constituent NAS 2187872
GO:0005518 collagen binding NAS 2187872
GO:0030674 protein binding, bridging NAS 9427527
genes like me logo Genes that share ontologies with COL14A1: view
genes like me logo Genes that share phenotypes with COL14A1: view

Human Phenotype Ontology for COL14A1 Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Models for COL14A1 Gene

MGI Knock Outs for COL14A1:

Animal Model Products

  • Taconic Biosciences Mouse Models for COL14A1

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targets and HOMER Transcription for COL14A1 Gene

Localization for COL14A1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for COL14A1 Gene

Secreted, extracellular space, extracellular matrix.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for COL14A1 gene
Compartment Confidence
extracellular 5
endoplasmic reticulum 5
plasma membrane 3
golgi apparatus 2
mitochondrion 1
peroxisome 1
lysosome 1

Gene Ontology (GO) - Cellular Components for COL14A1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region TAS --
GO:0005578 proteinaceous extracellular matrix NAS 2187872
GO:0005581 collagen trimer NAS 9427527
GO:0005596 collagen type XIV trimer NAS 9427527
GO:0005615 extracellular space IDA 20551380
genes like me logo Genes that share ontologies with COL14A1: view

Pathways & Interactions for COL14A1 Gene

genes like me logo Genes that share pathways with COL14A1: view

Gene Ontology (GO) - Biological Process for COL14A1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007155 cell adhesion IEA --
GO:0016337 single organismal cell-cell adhesion NAS 9427527
GO:0030198 extracellular matrix organization NAS 9427527
GO:0030199 collagen fibril organization NAS 2187872
genes like me logo Genes that share ontologies with COL14A1: view

No data available for SIGNOR curated interactions for COL14A1 Gene

Drugs & Compounds for COL14A1 Gene

(1) Drugs for COL14A1 Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials

(1) Additional Compounds for COL14A1 Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with COL14A1: view

Transcripts for COL14A1 Gene

Unigene Clusters for COL14A1 Gene

Collagen, type XIV, alpha 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for COL14A1 Gene

No ASD Table

Relevant External Links for COL14A1 Gene

GeneLoc Exon Structure for
COL14A1
ECgene alternative splicing isoforms for
COL14A1

Expression for COL14A1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for COL14A1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for COL14A1 Gene

This gene is overexpressed in Artery - Tibial (x10.6), Artery - Aorta (x9.7), and Artery - Coronary (x6.2).

Protein differential expression in normal tissues from HIPED for COL14A1 Gene

This gene is overexpressed in Prostate (10.1) and Urinary Bladder (6.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for COL14A1 Gene



Protein tissue co-expression partners for COL14A1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of COL14A1 Gene:

COL14A1

SOURCE GeneReport for Unigene cluster for COL14A1 Gene:

Hs.409662

Evidence on tissue expression from TISSUES for COL14A1 Gene

  • Liver(4.7)
  • Heart(3.8)
  • Kidney(2.5)
  • Adrenal gland(2.2)
  • Gall bladder(2)

Phenotype-based relationships between genes and organs from Gene ORGANizer for COL14A1 Gene

Germ Layers:
  • ectoderm
  • endoderm
  • mesoderm
Systems:
  • digestive
  • endocrine
  • immune
  • integumentary
  • urinary
Organs:
Thorax:
  • breast
Abdomen:
  • intestine
  • kidney
  • large intestine
  • pancreas
Limb:
  • foot
  • hand
  • lower limb
  • nail
  • upper limb
General:
  • blood
  • hair
  • skin
  • white blood cell
genes like me logo Genes that share expression patterns with COL14A1: view

Primer Products

No data available for mRNA Expression by UniProt/SwissProt for COL14A1 Gene

Orthologs for COL14A1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for COL14A1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia COL14A1 34 35
  • 99.54 (n)
dog
(Canis familiaris)
Mammalia COL14A1 34 35
  • 89.9 (n)
cow
(Bos Taurus)
Mammalia COL14A1 34 35
  • 86.99 (n)
mouse
(Mus musculus)
Mammalia Col14a1 34 16 35
  • 86.26 (n)
rat
(Rattus norvegicus)
Mammalia Col14a1 34
  • 86 (n)
oppossum
(Monodelphis domestica)
Mammalia COL14A1 35
  • 78 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 49 (a)
ManyToMany
chicken
(Gallus gallus)
Aves COL14A1 34 35
  • 74.64 (n)
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 73 (a)
OneToMany
-- 35
  • 70 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii col14a1a 34 35
  • 62.87 (n)
wufb93g03 34
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.10198 34
sea squirt
(Ciona savignyi)
Ascidiacea CSA.10963 35
  • 20 (a)
OneToMany
Species where no ortholog for COL14A1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for COL14A1 Gene

ENSEMBL:
Gene Tree for COL14A1 (if available)
TreeFam:
Gene Tree for COL14A1 (if available)

Paralogs for COL14A1 Gene

(9) SIMAP similar genes for COL14A1 Gene using alignment to 6 proteins:

Pseudogenes.org Pseudogenes for COL14A1 Gene

genes like me logo Genes that share paralogs with COL14A1: view

Variants for COL14A1 Gene

Sequence variations from dbSNP and Humsavar for COL14A1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs397514597 Uncertain significance 120,313,981(+) GGGTC(C/T)ACCTG reference, missense
rs1000000018 -- 120,258,031(+) ATTTT(A/G)CAAGG intron-variant
rs1000002064 -- 120,215,457(+) AAAAG(A/T)TCATG intron-variant
rs1000010809 -- 120,301,666(+) ACATT(C/T)GTGTG intron-variant
rs1000071433 -- 120,232,824(+) TAGGT(-/C)TTTGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for COL14A1 Gene

Variant ID Type Subtype PubMed ID
nsv1115793 CNV duplication 24896259
nsv1117851 CNV deletion 24896259
nsv612112 CNV gain 21841781
nsv6364 CNV deletion 18451855

Variation tolerance for COL14A1 Gene

Residual Variation Intolerance Score: 37.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.50; 77.61% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for COL14A1 Gene

Human Gene Mutation Database (HGMD)
COL14A1
SNPedia medical, phenotypic, and genealogical associations of SNPs for
COL14A1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for COL14A1 Gene

Disorders for COL14A1 Gene

MalaCards: The human disease database

(6) MalaCards diseases for COL14A1 Gene - From: Orphanet, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
keratoderma, palmoplantar, punctate type ia
  • punctate palmoplantar keratoderma type i
punctate palmoplantar keratoderma
  • punctate keratosis palmoplantaris
collagenous colitis
  • microscopic colitis, collagenous type
peliosis hepatis
  • hepatic peliosis
supraglottis cancer
  • ca larynx - supraglottis
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for COL14A1

Genetic Association Database (GAD)
COL14A1
Human Genome Epidemiology (HuGE) Navigator
COL14A1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
COL14A1
genes like me logo Genes that share disorders with COL14A1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for COL14A1 Gene

Publications for COL14A1 Gene

  1. Complete primary structure of human collagen type XIV (undulin). (PMID: 9427527) Bauer M. … Schuppan D. (Biochim. Biophys. Acta 1997) 2 3 4 22 64
  2. Undulin is a novel member of the fibronectin-tenascin family of extracellular matrix glycoproteins. (PMID: 1716629) Just M. … Schuppan D. (J. Biol. Chem. 1991) 2 3 4 22 64
  3. The COL12A1 and COL14A1 genes and Achilles tendon injuries. (PMID: 17960519) September A.V. … Collins M. (Int J Sports Med 2008) 3 22 46 64
  4. Undulin, an extracellular matrix glycoprotein associated with collagen fibrils. (PMID: 2187872) Schuppan D. … Hahn E. (J. Biol. Chem. 1990) 3 4 22 64
  5. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 46 64

Products for COL14A1 Gene

Sources for COL14A1 Gene

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