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Aliases for COG1 Gene

Aliases for COG1 Gene

  • Component Of Oligomeric Golgi Complex 1 2 3 4 5
  • Low Density Lipoprotein Receptor Defect B Complementing 2 3
  • COG Complex Subunit 1 3 4
  • LDLB 3 4
  • Conserved Oligomeric Golgi Complex Protein 1 3
  • Conserved Oligomeric Golgi Complex Subunit 1 3
  • KIAA1381 4
  • CDG2G 3

External Ids for COG1 Gene

Previous HGNC Symbols for COG1 Gene

  • LDLB

Previous GeneCards Identifiers for COG1 Gene

  • GC17P071074
  • GC17P074229
  • GC17P071653
  • GC17P071786
  • GC17P068700
  • GC17P071189
  • GC17P066598

Summaries for COG1 Gene

Entrez Gene Summary for COG1 Gene

  • The protein encoded by this gene is one of eight proteins (Cog1-8) which form a Golgi-localized complex (COG) required for normal Golgi morphology and function. It is thought that this protein is required for steps in the normal medial and trans Golgi-associated processing of glycoconjugates and plays a role in the organization of the Golgi-localized complex. [provided by RefSeq, Jul 2008]

GeneCards Summary for COG1 Gene

COG1 (Component Of Oligomeric Golgi Complex 1) is a Protein Coding gene. Diseases associated with COG1 include Congenital Disorder Of Glycosylation, Type Iig and Cerebrocostomandibular-Like Syndrome. Among its related pathways are Transport to the Golgi and subsequent modification and Vesicle-mediated transport.

UniProtKB/Swiss-Prot for COG1 Gene

  • Required for normal Golgi function.

Gene Wiki entry for COG1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for COG1 Gene

Genomics for COG1 Gene

Regulatory Elements for COG1 Gene

Enhancers for COG1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F073226 0.5 ENCODE 19.3 +35.7 35709 4.0 PKNOX1 ARNT ARID4B SIN3A FEZF1 YY1 GATA2 FOS KLF13 JUNB COG1 C17orf80 GC17M073213
GH17F073196 0.2 ENCODE 14.1 +4.1 4065 0.2 CTCF ELK1 ETV1 GABPB1 REST ZBTB40 RAD21 COG1 ENSG00000277728
GH17F073202 1.4 FANTOM5 Ensembl ENCODE 13.6 +11.2 11152 2.3 ELF3 PKNOX1 ARID4B DMAP1 RARA CREM MIXL1 THAP11 NFYC USF2 C17orf80 COG1 ENSG00000277728 PIR44468 GC17M073210
GH17F073334 1.5 FANTOM5 Ensembl ENCODE 13 +147.2 147185 10.4 TBP KLF17 ARID4B SIN3A RAD21 RARA RFX5 ZNF366 SMARCC2 RCOR1 CDC42EP4 COG1 SDK2 SSTR2 GC17P073336 GC17M073289
GH17F073230 0.2 ENCODE 12.6 +39.5 39523 3.1 HDGF CREB3L1 MLX WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 C17orf80 COG1 GC17M073213
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around COG1 on UCSC Golden Path with GeneCards custom track

Promoters for COG1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001352739 368 3201 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 YY1 ZNF143 FOS SP3 SP5

Genomic Location for COG1 Gene

Chromosome:
17
Start:
73,192,632 bp from pter
End:
73,208,507 bp from pter
Size:
15,876 bases
Orientation:
Plus strand

Genomic View for COG1 Gene

Genes around COG1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
COG1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for COG1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for COG1 Gene

Proteins for COG1 Gene

  • Protein details for COG1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8WTW3-COG1_HUMAN
    Recommended name:
    Conserved oligomeric Golgi complex subunit 1
    Protein Accession:
    Q8WTW3
    Secondary Accessions:
    • Q9NPV9
    • Q9P2G6

    Protein attributes for COG1 Gene

    Size:
    980 amino acids
    Molecular mass:
    108978 Da
    Quaternary structure:
    • Component of the conserved oligomeric Golgi complex which is composed of eight different subunits and is required for normal Golgi morphology and localization.
    SequenceCaution:
    • Sequence=BAA92619.1; Type=Frameshift; Positions=937; Evidence={ECO:0000305};

neXtProt entry for COG1 Gene

Post-translational modifications for COG1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for COG1 Gene

No data available for DME Specific Peptides for COG1 Gene

Domains & Families for COG1 Gene

Gene Families for COG1 Gene

Protein Domains for COG1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for COG1 Gene

Graphical View of Domain Structure for InterPro Entry

Q8WTW3

UniProtKB/Swiss-Prot:

COG1_HUMAN :
  • Belongs to the COG1 family.
Family:
  • Belongs to the COG1 family.
genes like me logo Genes that share domains with COG1: view

Function for COG1 Gene

Molecular function for COG1 Gene

UniProtKB/Swiss-Prot Function:
Required for normal Golgi function.

Gene Ontology (GO) - Molecular Function for COG1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 15047703
genes like me logo Genes that share ontologies with COG1: view
genes like me logo Genes that share phenotypes with COG1: view

Human Phenotype Ontology for COG1 Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Model Products

miRNA for COG1 Gene

miRTarBase miRNAs that target COG1

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for COG1 Gene

Localization for COG1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for COG1 Gene

Golgi apparatus membrane; Peripheral membrane protein; Cytoplasmic side.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for COG1 Gene COMPARTMENTS Subcellular localization image for COG1 gene
Compartment Confidence
golgi apparatus 5
cytosol 2
extracellular 2
nucleus 2
peroxisome 1

Gene Ontology (GO) - Cellular Components for COG1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000139 Golgi membrane TAS --
GO:0005794 Golgi apparatus IEA,IDA 11980916
GO:0016020 membrane IEA --
GO:0017119 Golgi transport complex IEA,NAS 11980916
GO:0032588 trans-Golgi network membrane TAS --
genes like me logo Genes that share ontologies with COG1: view

Pathways & Interactions for COG1 Gene

genes like me logo Genes that share pathways with COG1: view

Gene Ontology (GO) - Biological Process for COG1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000301 retrograde transport, vesicle recycling within Golgi IBA --
GO:0006810 transport IEA --
GO:0006888 ER to Golgi vesicle-mediated transport TAS --
GO:0006891 intra-Golgi vesicle-mediated transport IEA,NAS 11980916
GO:0007030 Golgi organization NAS 11980916
genes like me logo Genes that share ontologies with COG1: view

No data available for SIGNOR curated interactions for COG1 Gene

Transcripts for COG1 Gene

Unigene Clusters for COG1 Gene

Component of oligomeric golgi complex 1:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for COG1 Gene

ExUns: 1a · 1b ^ 2a · 2b · 2c ^ 3a · 3b · 3c ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11a · 11b ^ 12a · 12b ^ 13
SP1:
SP2:
SP3:
SP4: -
SP5:
SP6:

Relevant External Links for COG1 Gene

GeneLoc Exon Structure for
COG1
ECgene alternative splicing isoforms for
COG1

Expression for COG1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for COG1 Gene

Protein differential expression in normal tissues from HIPED for COG1 Gene

This gene is overexpressed in Bone (58.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for COG1 Gene



Protein tissue co-expression partners for COG1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of COG1 Gene:

COG1

SOURCE GeneReport for Unigene cluster for COG1 Gene:

Hs.103555
genes like me logo Genes that share expression patterns with COG1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for COG1 Gene

Orthologs for COG1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for COG1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia COG1 34 35
  • 99.76 (n)
dog
(Canis familiaris)
Mammalia COG1 34 35
  • 88.76 (n)
mouse
(Mus musculus)
Mammalia Cog1 34 16 35
  • 84.44 (n)
rat
(Rattus norvegicus)
Mammalia Cog1 34
  • 84.03 (n)
cow
(Bos Taurus)
Mammalia COG1 34 35
  • 83.67 (n)
oppossum
(Monodelphis domestica)
Mammalia COG1 35
  • 76 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia COG1 35
  • 55 (a)
OneToOne
chicken
(Gallus gallus)
Aves COG1 34 35
  • 71.93 (n)
lizard
(Anolis carolinensis)
Reptilia COG1 35
  • 66 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia cog1 34
  • 63.63 (n)
African clawed frog
(Xenopus laevis)
Amphibia Xl.12935 34
zebrafish
(Danio rerio)
Actinopterygii cog1 34 35
  • 62.15 (n)
wuft63e05 34
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.12436 34
fruit fly
(Drosophila melanogaster)
Insecta CG4848 34 35
  • 42.34 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP001322 34
  • 41.42 (n)
thale cress
(Arabidopsis thaliana)
eudicotyledons AT5G16300 34
  • 41.68 (n)
rice
(Oryza sativa)
Liliopsida Os01g0777000 34
  • 42.98 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 29 (a)
OneToOne
Species where no ortholog for COG1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for COG1 Gene

ENSEMBL:
Gene Tree for COG1 (if available)
TreeFam:
Gene Tree for COG1 (if available)

Paralogs for COG1 Gene

Pseudogenes.org Pseudogenes for COG1 Gene

genes like me logo Genes that share paralogs with COG1: view

No data available for Paralogs for COG1 Gene

Variants for COG1 Gene

Sequence variations from dbSNP and Humsavar for COG1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs139304974 Likely benign 73,197,258(+) CATTA(G/T)TGGAG reference, missense
rs117208167 Uncertain significance 73,197,386(+) GGCCA(A/C/G)CATCC reference, synonymous-codon, missense
rs185592690 Uncertain significance 73,197,216(+) GGTTT(C/G)TTCTT intron-variant
rs193920973 Uncertain significance 73,203,051(+) GCTCA(A/G)TTCTG reference, missense
rs193921130 Uncertain significance 73,201,175(+) CTTTG(C/T)AGGAA reference, stop-gained

Structural Variations from Database of Genomic Variants (DGV) for COG1 Gene

Variant ID Type Subtype PubMed ID
esv2104946 CNV deletion 18987734
esv2716191 CNV deletion 23290073
nsv833534 CNV loss 17160897

Variation tolerance for COG1 Gene

Residual Variation Intolerance Score: 39.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.51; 64.61% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for COG1 Gene

Human Gene Mutation Database (HGMD)
COG1
SNPedia medical, phenotypic, and genealogical associations of SNPs for
COG1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for COG1 Gene

Disorders for COG1 Gene

MalaCards: The human disease database

(4) MalaCards diseases for COG1 Gene - From: OMIM, ClinVar, Orphanet, DISEASES, and GeneCards

- elite association - COSMIC cancer census association via MalaCards
Search COG1 in MalaCards View complete list of genes associated with diseases

UniProtKB/Swiss-Prot

COG1_HUMAN
  • Congenital disorder of glycosylation 2G (CDG2G) [MIM:611209]: A multisystem disorder caused by a defect in glycoprotein biosynthesis and characterized by under-glycosylated serum glycoproteins. Congenital disorders of glycosylation result in a wide variety of clinical features, such as defects in the nervous system development, psychomotor retardation, dysmorphic features, hypotonia, coagulation disorders, and immunodeficiency. The broad spectrum of features reflects the critical role of N-glycoproteins during embryonic development, differentiation, and maintenance of cell functions. Clinical features of CDG2G include failure to thrive, generalized hypotonia, growth retardation and mild psychomotor retardation. CDG2G is biochemically characterized by a defect in O-glycosylation as well as N-glycosylation. {ECO:0000269 PubMed:16537452}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Relevant External Links for COG1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
COG1
genes like me logo Genes that share disorders with COG1: view

No data available for Genatlas for COG1 Gene

Publications for COG1 Gene

  1. Conserved oligomeric Golgi complex subunit 1 deficiency reveals a previously uncharacterized congenital disorder of glycosylation type II. (PMID: 16537452) Foulquier F. … Matthijs G. (Proc. Natl. Acad. Sci. U.S.A. 2006) 4 22 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. Characterization of a mammalian Golgi-localized protein complex, COG, that is required for normal Golgi morphology and function. (PMID: 11980916) Ungar D. … Waters M.G. (J. Cell Biol. 2002) 3 4 64
  4. Prediction of the coding sequences of unidentified human genes. XVI. The complete sequences of 150 new cDNA clones from brain which code for large proteins in vitro. (PMID: 10718198) Nagase T. … Ohara O. (DNA Res. 2000) 3 4 64
  5. Expression cloning of LDLB, a gene essential for normal Golgi function and assembly of the ldlCp complex. (PMID: 9927668) Chatterton J.E. … Krieger M. (Proc. Natl. Acad. Sci. U.S.A. 1999) 2 3 64

Products for COG1 Gene

Sources for COG1 Gene

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