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Aliases for COA1 Gene

Aliases for COA1 Gene

  • Cytochrome C Oxidase Assembly Factor 1 Homolog 2 3 5
  • Mitochondrial Translation Regulation Assembly Intermediate Of Cytochrome C Oxidase Protein Of 15 KDa 3 4
  • MITRAC15 3 4
  • C7orf44 3 4
  • Cytochrome C Oxidase Assembly Factor 1 Homolog (S. Cerevisiae) 2
  • Cytochrome C Oxidase Assembly Protein 1 Homolog 3
  • Chromosome 7 Open Reading Frame 44 2

External Ids for COA1 Gene

Previous HGNC Symbols for COA1 Gene

  • C7orf44

Previous GeneCards Identifiers for COA1 Gene

  • GC07M043648

Summaries for COA1 Gene

GeneCards Summary for COA1 Gene

COA1 (Cytochrome C Oxidase Assembly Factor 1 Homolog) is a Protein Coding gene.

UniProtKB/Swiss-Prot for COA1 Gene

  • Component of the MITRAC (mitochondrial translation regulation assembly intermediate of cytochrome c oxidase complex) complex, that regulates cytochrome c oxidase assembly. MITRAC complexes regulate both translation of mitochondrial encoded components and assembly of nuclear-encoded components imported in mitochondrion. Required for assembly of mitochondrial respiratory chain complex I and complex IV.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for COA1 Gene

Genomics for COA1 Gene

Regulatory Elements for COA1 Gene

Enhancers for COA1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F043668 0.6 Ensembl ENCODE 28.8 +59.8 59836 1.9 SRF PKNOX1 JUNB ZNF316 CBX5 EGR1 PBX2 POU5F1 ZBTB33 MAFK COA1 STK17A BLVRA GC07M043624
GH07F043697 1.2 Ensembl ENCODE 27.8 +30.7 30717 2.8 CTCF RAD21 ZNF48 ZNF143 SMC3 MIXL1 ZNF654 ZNF680 ZNF362 TRIM22 COA1 STK17A BLVRA MRPS24 GCK GC07M043624
GH07F043664 0.6 Ensembl 26.4 +64.9 64917 0.4 JUND SIN3A RAD21 COA1 STK17A GC07M043624
GH07F043628 1.1 FANTOM5 ENCODE 26.3 +98.4 98351 6.3 ZNF146 PKNOX1 CEBPG IRF9 ZNF316 CBX5 POLR2A SCRT2 EED ZNF143 STK17A COA1 BLVRA DBNL POLM GC07M043624
GH07F043642 1 FANTOM5 ENCODE 23.6 +81.9 81935 10.4 HDGF PKNOX1 WRNIP1 SIN3A BRCA1 ELK1 FOS DEK ZNF263 SP3 STK17A COA1 BLVRA ENSG00000241057 DBNL POLM GC07M043624
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around COA1 on UCSC Golden Path with GeneCards custom track

Promoters for COA1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000625583 417 2600 HDGF PKNOX1 ARNT MLX CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2

Genomic Location for COA1 Gene

Chromosome:
7
Start:
43,608,452 bp from pter
End:
43,729,717 bp from pter
Size:
121,266 bases
Orientation:
Minus strand

Genomic View for COA1 Gene

Genes around COA1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
COA1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for COA1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for COA1 Gene

Proteins for COA1 Gene

  • Protein details for COA1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9GZY4-COA1_HUMAN
    Recommended name:
    Cytochrome c oxidase assembly factor 1 homolog
    Protein Accession:
    Q9GZY4
    Secondary Accessions:
    • A6NJU8
    • A8KAH8
    • Q9HAB7
    • Q9NVD2

    Protein attributes for COA1 Gene

    Size:
    146 amino acids
    Molecular mass:
    16694 Da
    Quaternary structure:
    • Component of the MITRAC (mitochondrial translation regulation assembly intermediate of cytochrome c oxidase complex) complex, the core components of this complex being COA3/MITRAC12 and COX14. Interacts with COX17 and COA6.

neXtProt entry for COA1 Gene

Post-translational modifications for COA1 Gene

  • Ubiquitination at Lys 125
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for COA1 Gene

Domains & Families for COA1 Gene

Protein Domains for COA1 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q9GZY4

UniProtKB/Swiss-Prot:

COA1_HUMAN :
  • Belongs to the COA1 family.
Family:
  • Belongs to the COA1 family.
genes like me logo Genes that share domains with COA1: view

No data available for Suggested Antigen Peptide Sequences for COA1 Gene

Function for COA1 Gene

Molecular function for COA1 Gene

UniProtKB/Swiss-Prot Function:
Component of the MITRAC (mitochondrial translation regulation assembly intermediate of cytochrome c oxidase complex) complex, that regulates cytochrome c oxidase assembly. MITRAC complexes regulate both translation of mitochondrial encoded components and assembly of nuclear-encoded components imported in mitochondrion. Required for assembly of mitochondrial respiratory chain complex I and complex IV.

Gene Ontology (GO) - Molecular Function for COA1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003723 RNA binding IBA --
GO:0003735 structural constituent of ribosome IBA --
genes like me logo Genes that share ontologies with COA1: view

Phenotypes for COA1 Gene

genes like me logo Genes that share phenotypes with COA1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for COA1 Gene

Localization for COA1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for COA1 Gene

Mitochondrion inner membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for COA1 Gene COMPARTMENTS Subcellular localization image for COA1 gene
Compartment Confidence
mitochondrion 5
cytosol 4

Gene Ontology (GO) - Cellular Components for COA1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IDA --
GO:0005739 mitochondrion IEA,IDA --
GO:0005743 mitochondrial inner membrane IEA --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with COA1: view

Pathways & Interactions for COA1 Gene

SuperPathways for COA1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for COA1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006412 translation IBA --
GO:0032981 mitochondrial respiratory chain complex I assembly IMP 23260140
GO:0033617 mitochondrial respiratory chain complex IV assembly IMP 23260140
genes like me logo Genes that share ontologies with COA1: view

No data available for Pathways by source and SIGNOR curated interactions for COA1 Gene

Transcripts for COA1 Gene

Unigene Clusters for COA1 Gene

Cytochrome c oxidase assembly factor 1 homolog (S. cerevisiae):
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for COA1 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9a · 9b · 9c ^ 10a · 10b · 10c · 10d ^ 11a · 11b · 11c · 11d · 11e · 11f · 11g · 11h ^
SP1: - - - - - - - - - - - - - - - - - -
SP2: - - - - - - - - - - - - - - - - -
SP3: - - - - - - - - - - - - - - - - - -
SP4: - - - - - - - - - - - - - - - - - -
SP5: - - - - - - - - - - - - - - - - - - -
SP6: - - - - - - - - - - - - - - - -
SP7: - - - - - - - - - - - - - - - - - - - -
SP8: - - - - - - - - - - - - - - - - - - - -
SP9: - - - - - - - - - - - - - - - - - -
SP10: - - - - - - - - - - - - - - - - -
SP11: - - - - - - - - -
SP12: - - - - - - - - - - - - - - - -
SP13: - - - - - - - - - - - - - - - - - -
SP14: - - - - - - -
SP15: - - - - - - - - - - - - -
SP16: - - - - - - - - - - - -
SP17: -
SP18: - - - - - - - - - - - - -
SP19: - - - - - - -
SP20: - - - - - - - - - - - - - -
SP21: - - - -
SP22: - - - - -
SP23:
SP24: - - - - - - - - - - - -
SP25: - -
SP26:

ExUns: 12 ^ 13a · 13b · 13c · 13d ^ 14 ^ 15a · 15b · 15c ^ 16a · 16b · 16c · 16d · 16e · 16f
SP1: - - - - -
SP2: - - - - -
SP3: - - - - -
SP4: - - - - -
SP5: - - - - -
SP6: - -
SP7: - - - - -
SP8: - - - - -
SP9: - - - - - - -
SP10: - - - - -
SP11: - - - - -
SP12: - -
SP13:
SP14: - - - - -
SP15:
SP16:
SP17:
SP18:
SP19: - - - -
SP20:
SP21:
SP22: - - - - -
SP23:
SP24:
SP25:
SP26: - - -

Relevant External Links for COA1 Gene

GeneLoc Exon Structure for
COA1
ECgene alternative splicing isoforms for
COA1

Expression for COA1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for COA1 Gene

Protein differential expression in normal tissues from HIPED for COA1 Gene

This gene is overexpressed in Bone (22.8), Lung (13.6), Vitreous humor (8.7), and Fetal ovary (6.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for COA1 Gene



NURSA nuclear receptor signaling pathways regulating expression of COA1 Gene:

COA1

SOURCE GeneReport for Unigene cluster for COA1 Gene:

Hs.654779
genes like me logo Genes that share expression patterns with COA1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for COA1 Gene

Orthologs for COA1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for COA1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C7H7orf44 34
  • 99.09 (n)
C7ORF44 35
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia COA1 34 35
  • 80.85 (n)
cow
(Bos Taurus)
Mammalia COA1 34
  • 79.35 (n)
FLJ10803 35
  • 71 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia COA1 35
  • 38 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia COA1 35
  • 42 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100492393 34
  • 56.64 (n)
zebrafish
(Danio rerio)
Actinopterygii rpl37 35
  • 40 (a)
OneToOne
Species where no ortholog for COA1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for COA1 Gene

ENSEMBL:
Gene Tree for COA1 (if available)
TreeFam:
Gene Tree for COA1 (if available)

Paralogs for COA1 Gene

Pseudogenes.org Pseudogenes for COA1 Gene

genes like me logo Genes that share paralogs with COA1: view

No data available for Paralogs for COA1 Gene

Variants for COA1 Gene

Sequence variations from dbSNP and Humsavar for COA1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs10081211 -- 43,659,512(+) CTCTG(A/T)TTCAT intron-variant
rs10081253 -- 43,657,346(+) GAACT(A/C)TCTTC intron-variant
rs10081357 -- 43,659,217(+) AGAAA(C/T)TGGGG intron-variant
rs10081363 -- 43,657,594(+) CAAAA(C/T)AGACA intron-variant
rs10081370 -- 43,659,704(+) TATTC(C/T)CACAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for COA1 Gene

Variant ID Type Subtype PubMed ID
dgv1905e212 CNV loss 25503493
esv2673882 CNV deletion 23128226
esv2734316 CNV deletion 23290073
esv2734318 CNV deletion 23290073
esv3571825 CNV loss 25503493
esv3576355 CNV gain 25503493
esv3612996 CNV gain 21293372
esv3613000 CNV loss 21293372
esv3613001 CNV loss 21293372
esv997089 CNV deletion 20482838
nsv1124191 CNV deletion 24896259
nsv464441 CNV loss 19166990
nsv5721 CNV insertion 18451855
nsv606745 CNV loss 21841781

Variation tolerance for COA1 Gene

Residual Variation Intolerance Score: 78.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.29; 6.53% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for COA1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
COA1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for COA1 Gene

Disorders for COA1 Gene

Relevant External Links for COA1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
COA1

No disorders were found for COA1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for COA1 Gene

Publications for COA1 Gene

  1. Iterative orthology prediction uncovers new mitochondrial proteins and identifies C12orf62 as the human ortholog of COX14, a protein involved in the assembly of cytochrome c oxidase. (PMID: 22356826) Szklarczyk R. … Huynen M.A. (Genome Biol. 2012) 2 3 4 64
  2. MITRAC links mitochondrial protein translocation to respiratory-chain assembly and translational regulation. (PMID: 23260140) Mick D.U. … Rehling P. (Cell 2012) 3 4 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  4. Restoration of miR-127-3p and miR-376a-3p counteracts the neoplastic phenotype of giant cell tumor of bone derived stromal cells by targeting COA1, GLE1 and PDIA6. (PMID: 26655997) Fellenberg J. … Herr I. (Cancer Lett. 2016) 3 64
  5. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64

Products for COA1 Gene

Sources for COA1 Gene

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