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Aliases for CNTNAP3P2 Gene

Aliases for CNTNAP3P2 Gene

  • Contactin Associated Protein-Like 3 Pseudogene 2 2 3 5

External Ids for CNTNAP3P2 Gene

Previous GeneCards Identifiers for CNTNAP3P2 Gene

  • GC09P065573

Summaries for CNTNAP3P2 Gene

GeneCards Summary for CNTNAP3P2 Gene

CNTNAP3P2 (Contactin Associated Protein-Like 3 Pseudogene 2) is a Pseudogene.

Additional gene information for CNTNAP3P2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CNTNAP3P2 Gene

Genomics for CNTNAP3P2 Gene

Regulatory Elements for CNTNAP3P2 Gene

Enhancers for CNTNAP3P2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09H067060 0.5 Ensembl 0.7 +1.2 1241 0.2 GLIS1 SCRT2 ZIC2 CNTNAP3P2 LOC100420439
GH09H067061 0.2 Ensembl 0.7 +2.4 2441 1 CNTNAP3P2 LOC100420439
GH09H067062 0.2 Ensembl 0.7 +1.7 1673 0.4 CNTNAP3P2 LOC100420439
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CNTNAP3P2 on UCSC Golden Path with GeneCards custom track

Promoters for CNTNAP3P2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000235429 41 1799 L3MBTL2 GLIS1 SIN3A ZBTB26 ZBTB20

Genomic Locations for CNTNAP3P2 Gene

Genomic Locations for CNTNAP3P2 Gene
chr9:67,059,460-67,294,592
(GRCh38/hg38)
Size:
235,133 bases
Orientation:
Plus strand
chr9:65,572,847-65,665,647
(GRCh37/hg19)

Genomic View for CNTNAP3P2 Gene

Genes around CNTNAP3P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CNTNAP3P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CNTNAP3P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CNTNAP3P2 Gene

Proteins for CNTNAP3P2 Gene

Post-translational modifications for CNTNAP3P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CNTNAP3P2 Gene

Domains & Families for CNTNAP3P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CNTNAP3P2 Gene

Function for CNTNAP3P2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CNTNAP3P2 Gene

Localization for CNTNAP3P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CNTNAP3P2 Gene

Pathways & Interactions for CNTNAP3P2 Gene

SuperPathways for CNTNAP3P2 Gene

No Data Available

Interacting Proteins for CNTNAP3P2 Gene

Gene Ontology (GO) - Biological Process for CNTNAP3P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CNTNAP3P2 Gene

Drugs & Compounds for CNTNAP3P2 Gene

No Compound Related Data Available

Transcripts for CNTNAP3P2 Gene

mRNA/cDNA for CNTNAP3P2 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CNTNAP3P2 Gene

No ASD Table

Relevant External Links for CNTNAP3P2 Gene

GeneLoc Exon Structure for
CNTNAP3P2
ECgene alternative splicing isoforms for
CNTNAP3P2

Expression for CNTNAP3P2 Gene

mRNA differential expression in normal tissues according to GTEx for CNTNAP3P2 Gene

This gene is overexpressed in Esophagus - Muscularis (x6.0) and Esophagus - Gastroesophageal Junction (x4.4).

NURSA nuclear receptor signaling pathways regulating expression of CNTNAP3P2 Gene:

CNTNAP3P2

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CNTNAP3P2 Gene

Orthologs for CNTNAP3P2 Gene

Evolution for CNTNAP3P2 Gene

ENSEMBL:
Gene Tree for CNTNAP3P2 (if available)
TreeFam:
Gene Tree for CNTNAP3P2 (if available)

No data available for Orthologs for CNTNAP3P2 Gene

Paralogs for CNTNAP3P2 Gene

No data available for Paralogs for CNTNAP3P2 Gene

Variants for CNTNAP3P2 Gene

Sequence variations from dbSNP and Humsavar for CNTNAP3P2 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1000014404 -- 67,102,968(-) GTCAT(A/G)CAAGG intron-variant
rs1000033400 -- 67,111,686(-) GCAAG(A/G)TTTTA intron-variant
rs1000059935 -- 67,169,786(-) CAAAG(A/T)TGTTA intron-variant
rs1000062219 -- 67,102,041(-) TTTCT(A/C)TCTCT intron-variant
rs1000079091 -- 67,270,008(+) ATGAA(A/C)ATACA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CNTNAP3P2 Gene

Variant ID Type Subtype PubMed ID
nsv982434 CNV duplication 23825009
nsv982433 CNV duplication 23825009
nsv982247 CNV duplication 23825009
nsv972715 CNV duplication 23825009
nsv972687 CNV duplication 23825009
nsv972686 CNV duplication 23825009
nsv972685 CNV duplication 23825009
nsv972346 CNV duplication 23825009
nsv972345 CNV duplication 23825009
nsv972327 CNV duplication 23825009
nsv968625 CNV duplication 23825009
nsv951750 CNV duplication 24416366
nsv8456 CNV gain+loss 18304495
nsv831564 CNV loss 17160897
nsv831560 CNV gain 17160897
nsv831558 CNV gain+loss 17160897
nsv831557 CNV gain+loss 17160897
nsv831556 CNV loss 17160897
nsv824933 CNV loss 20364138
nsv614445 CNV loss 21841781
nsv614443 CNV gain 21841781
nsv614322 CNV loss 21841781
nsv469605 CNV gain 16826518
nsv1150598 CNV duplication 26484159
nsv1137646 CNV deletion 24896259
nsv1133716 CNV deletion 24896259
nsv1133715 CNV deletion 24896259
nsv1132699 CNV duplication 24896259
nsv1132698 CNV duplication 24896259
nsv1132697 CNV duplication 24896259
nsv1132696 CNV duplication 24896259
nsv1129007 CNV duplication 24896259
nsv1122222 CNV deletion 24896259
nsv1122220 CNV deletion 24896259
nsv1119262 CNV duplication 24896259
esv3891667 CNV gain+loss 25118596
esv3891665 CNV loss 25118596
esv3620453 CNV loss 21293372
esv3584911 CNV loss 24956385
esv2762814 CNV loss 21179565
esv2761528 CNV gain 21179565
esv26212 CNV gain+loss 19812545
esv22739 CNV gain+loss 19812545
dgv12720n54 CNV gain 21841781
dgv12719n54 CNV loss 21841781
dgv12718n54 CNV loss 21841781
dgv12716n54 CNV loss 21841781

Relevant External Links for CNTNAP3P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CNTNAP3P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CNTNAP3P2 Gene

Disorders for CNTNAP3P2 Gene

Relevant External Links for CNTNAP3P2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CNTNAP3P2

No disorders were found for CNTNAP3P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CNTNAP3P2 Gene

Publications for CNTNAP3P2 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for CNTNAP3P2 Gene

Sources for CNTNAP3P2 Gene

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