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Aliases for CNTN4-AS2 Gene

Subcategory (RNA class) for CNTN4-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CNTN4-AS2 Gene

  • CNTN4 Antisense RNA 2 2 3 5
  • CNTN4 Antisense RNA 2 (Non-Protein Coding) 2

External Ids for CNTN4-AS2 Gene

Previous GeneCards Identifiers for CNTN4-AS2 Gene

  • GC00U933374

Summaries for CNTN4-AS2 Gene

GeneCards Summary for CNTN4-AS2 Gene

CNTN4-AS2 (CNTN4 Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CNTN4-AS2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CNTN4-AS2 Gene

Genomics for CNTN4-AS2 Gene

Regulatory Elements for CNTN4-AS2 Gene

Enhancers for CNTN4-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H002157 0.3 FANTOM5 0.4 -13.4 -13369 0 CNTN4 CNTN4-AS2 GC03P002249
GH03H002215 0.3 FANTOM5 0.2 -71.7 -71650 0 CNTN4 GC03P002249 CNTN4-AS2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CNTN4-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Location for CNTN4-AS2 Gene

Chromosome:
3
Start:
2,110,409 bp from pter
End:
2,144,241 bp from pter
Size:
33,833 bases
Orientation:
Minus strand

Genomic View for CNTN4-AS2 Gene

Genes around CNTN4-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CNTN4-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CNTN4-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CNTN4-AS2 Gene

Proteins for CNTN4-AS2 Gene

Post-translational modifications for CNTN4-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CNTN4-AS2 Gene

Domains & Families for CNTN4-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CNTN4-AS2 Gene

Function for CNTN4-AS2 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for CNTN4-AS2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CNTN4-AS2 Gene

Localization for CNTN4-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CNTN4-AS2 Gene

Pathways & Interactions for CNTN4-AS2 Gene

SuperPathways for CNTN4-AS2 Gene

No Data Available

Interacting Proteins for CNTN4-AS2 Gene

Gene Ontology (GO) - Biological Process for CNTN4-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CNTN4-AS2 Gene

Drugs & Compounds for CNTN4-AS2 Gene

No Compound Related Data Available

Transcripts for CNTN4-AS2 Gene

mRNA/cDNA for CNTN4-AS2 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CNTN4-AS2 Gene

CNTN4 antisense RNA 2:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for CNTN4-AS2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for CNTN4-AS2 Gene

No ASD Table

Relevant External Links for CNTN4-AS2 Gene

GeneLoc Exon Structure for
CNTN4-AS2
ECgene alternative splicing isoforms for
CNTN4-AS2

Expression for CNTN4-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CNTN4-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for CNTN4-AS2 Gene

This gene is overexpressed in Nerve - Tibial (x6.0), Testis (x5.4), Brain - Cerebellar Hemisphere (x5.2), Artery - Aorta (x4.7), and Artery - Tibial (x4.4).

SOURCE GeneReport for Unigene cluster for CNTN4-AS2 Gene:

Hs.611138
genes like me logo Genes that share expression patterns with CNTN4-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CNTN4-AS2 Gene

Orthologs for CNTN4-AS2 Gene

Evolution for CNTN4-AS2 Gene

ENSEMBL:
Gene Tree for CNTN4-AS2 (if available)
TreeFam:
Gene Tree for CNTN4-AS2 (if available)

No data available for Orthologs for CNTN4-AS2 Gene

Paralogs for CNTN4-AS2 Gene

No data available for Paralogs for CNTN4-AS2 Gene

Variants for CNTN4-AS2 Gene

Sequence variations from dbSNP and Humsavar for CNTN4-AS2 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000013721 -- 2,130,605(+) AGCAG(C/T)ATTAG intron-variant
rs1000259368 -- 2,125,625(+) ACCAT(A/C)TTGGA intron-variant
rs1000288423 -- 2,117,535(+) TGGGG(A/G)AGGGG intron-variant
rs1000314043 -- 2,131,184(+) GAGAA(A/G)TTAAG intron-variant
rs1000373514 -- 2,121,460(+) ACCAC(G/T)GCACC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CNTN4-AS2 Gene

Variant ID Type Subtype PubMed ID
dgv4629n100 CNV gain 25217958
dgv4634n100 CNV gain 25217958
dgv8157n54 CNV gain 21841781
dgv8164n54 CNV gain 21841781
dgv8165n54 CNV gain 21841781
esv2422274 CNV duplication 17116639
esv2422325 CNV duplication 17116639
esv2422409 CNV deletion 17116639
esv2751990 CNV gain 17911159
esv2763774 CNV gain+loss 21179565
esv3307471 CNV mobile element insertion 20981092
esv3342780 CNV insertion 20981092
esv3575531 CNV gain 25503493
esv3595011 CNV loss 21293372
esv3595012 CNV loss 21293372
esv3595013 CNV gain 21293372
esv3893608 CNV gain 25118596
nsv1005807 CNV gain 25217958
nsv1006039 CNV gain 25217958
nsv1007298 CNV loss 25217958
nsv1009942 CNV gain 25217958
nsv1011386 CNV loss 25217958
nsv1012867 CNV loss 25217958
nsv1072230 CNV deletion 25765185
nsv1123616 CNV deletion 24896259
nsv460312 CNV gain 19166990
nsv460321 CNV gain 19166990
nsv460323 CNV gain 19166990
nsv460324 CNV loss 19166990
nsv460325 CNV gain 19166990
nsv526340 CNV loss 19592680
nsv589322 CNV loss 21841781
nsv589345 CNV gain 21841781
nsv589362 CNV gain 21841781
nsv589363 CNV gain 21841781
nsv589368 CNV loss 21841781
nsv834600 CNV loss 17160897
nsv998345 CNV gain 25217958

Relevant External Links for CNTN4-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CNTN4-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CNTN4-AS2 Gene

Disorders for CNTN4-AS2 Gene

Relevant External Links for CNTN4-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CNTN4-AS2

No disorders were found for CNTN4-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CNTN4-AS2 Gene

Publications for CNTN4-AS2 Gene

No publications were found for CNTN4-AS2 Gene.

Products for CNTN4-AS2 Gene

Sources for CNTN4-AS2 Gene

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