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Aliases for CNTN4-AS1 Gene

Subcategory (RNA class) for CNTN4-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for CNTN4-AS1 Gene

  • CNTN4 Antisense RNA 1 2 3 5
  • CNTN4 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for CNTN4-AS1 Gene

Previous GeneCards Identifiers for CNTN4-AS1 Gene

  • GC00U933675

Summaries for CNTN4-AS1 Gene

GeneCards Summary for CNTN4-AS1 Gene

CNTN4-AS1 (CNTN4 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CNTN4-AS1 Gene

Genomics for CNTN4-AS1 Gene

Regulatory Elements for CNTN4-AS1 Gene

Enhancers for CNTN4-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F003109 1 Ensembl ENCODE 10.9 -40.9 -40911 2.1 PKNOX1 BMI1 PYGO2 GATA2 ZBTB20 EGR2 ZNF639 RFX1 MTA2 RNF2 ENSG00000271870 CNTN4-AS1 ENSG00000253049 IL5RA
GH03F003053 0.6 ENCODE 0.4 +15.0 14963 1.3 ARID1B MEF2D JUND ATF3 GATA2 CNTN4-AS1 DNAJC19P4
GH03F003031 0.2 ENCODE 0.3 +37.7 37682 0.8 CNTN4 CNTN4-AS1 DNAJC19P4
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CNTN4-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CNTN4-AS1 Gene

3,039,033 bp from pter
3,069,242 bp from pter
30,210 bases
Minus strand

Genomic View for CNTN4-AS1 Gene

Genes around CNTN4-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CNTN4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CNTN4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CNTN4-AS1 Gene

Proteins for CNTN4-AS1 Gene

Post-translational modifications for CNTN4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CNTN4-AS1 Gene

Domains & Families for CNTN4-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CNTN4-AS1 Gene

Function for CNTN4-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CNTN4-AS1 Gene

Localization for CNTN4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CNTN4-AS1 Gene

Pathways & Interactions for CNTN4-AS1 Gene

SuperPathways for CNTN4-AS1 Gene

No Data Available

Interacting Proteins for CNTN4-AS1 Gene

Gene Ontology (GO) - Biological Process for CNTN4-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for CNTN4-AS1 Gene

Transcripts for CNTN4-AS1 Gene

mRNA/cDNA for CNTN4-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CNTN4-AS1 Gene

No ASD Table

Relevant External Links for CNTN4-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CNTN4-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CNTN4-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CNTN4-AS1 Gene

This gene is overexpressed in Artery - Aorta (x5.2) and Artery - Tibial (x4.5).
genes like me logo Genes that share expression patterns with CNTN4-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CNTN4-AS1 Gene

Orthologs for CNTN4-AS1 Gene

Evolution for CNTN4-AS1 Gene

Gene Tree for CNTN4-AS1 (if available)
Gene Tree for CNTN4-AS1 (if available)

No data available for Orthologs for CNTN4-AS1 Gene

Paralogs for CNTN4-AS1 Gene

No data available for Paralogs for CNTN4-AS1 Gene

Variants for CNTN4-AS1 Gene

Sequence variations from dbSNP and Humsavar for CNTN4-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs10575511 -- 3,060,285(+) AGAAT(-/GTTGA)GTTAT intron-variant
rs10687205 -- 3,055,263(+) TATCT(-/ATCT/TATC)CGCTT intron-variant
rs10888 -- 3,057,678(+) TAAAG(A/T)CATAA intron-variant, utr-variant-3-prime
rs11129393 -- 3,040,699(+) AAGGC(G/T)GGTGG intron-variant
rs11129396 -- 3,044,935(+) ttcca(A/G)tggtc intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CNTN4-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv589371 CNV loss 21841781
nsv521796 CNV loss 19592680
nsv1013843 CNV loss 25217958
nsv1011872 CNV gain 25217958
esv2751994 CNV gain 17911159
esv2422274 CNV duplication 17116639
dgv4636n100 CNV gain 25217958

Relevant External Links for CNTN4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CNTN4-AS1 Gene

Disorders for CNTN4-AS1 Gene

Relevant External Links for CNTN4-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for CNTN4-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CNTN4-AS1 Gene

Publications for CNTN4-AS1 Gene

No publications were found for CNTN4-AS1 Gene.

Products for CNTN4-AS1 Gene

Sources for CNTN4-AS1 Gene

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