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Aliases for CNTN4-AS1 Gene

Subcategory (RNA class) for CNTN4-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CNTN4-AS1 Gene

  • CNTN4 Antisense RNA 1 2 3 5
  • CNTN4 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for CNTN4-AS1 Gene

Previous GeneCards Identifiers for CNTN4-AS1 Gene

  • GC00U933675

Summaries for CNTN4-AS1 Gene

GeneCards Summary for CNTN4-AS1 Gene

CNTN4-AS1 (CNTN4 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CNTN4-AS1 Gene

Genomics for CNTN4-AS1 Gene

Regulatory Elements for CNTN4-AS1 Gene

Enhancers for CNTN4-AS1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around CNTN4-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CNTN4-AS1 Gene

Chromosome:
3
Start:
3,039,033 bp from pter
End:
3,069,242 bp from pter
Size:
30,210 bases
Orientation:
Minus strand

Genomic View for CNTN4-AS1 Gene

Genes around CNTN4-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CNTN4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CNTN4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CNTN4-AS1 Gene

Proteins for CNTN4-AS1 Gene

Post-translational modifications for CNTN4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CNTN4-AS1 Gene

Domains & Families for CNTN4-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CNTN4-AS1 Gene

Function for CNTN4-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CNTN4-AS1 Gene

Localization for CNTN4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CNTN4-AS1 Gene

Pathways & Interactions for CNTN4-AS1 Gene

SuperPathways for CNTN4-AS1 Gene

No Data Available

Interacting Proteins for CNTN4-AS1 Gene

Gene Ontology (GO) - Biological Process for CNTN4-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CNTN4-AS1 Gene

Drugs & Compounds for CNTN4-AS1 Gene

No Compound Related Data Available

Transcripts for CNTN4-AS1 Gene

mRNA/cDNA for CNTN4-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CNTN4-AS1 Gene

No ASD Table

Relevant External Links for CNTN4-AS1 Gene

GeneLoc Exon Structure for
CNTN4-AS1
ECgene alternative splicing isoforms for
CNTN4-AS1

Expression for CNTN4-AS1 Gene

mRNA expression in normal human tissues for CNTN4-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CNTN4-AS1 Gene

This gene is overexpressed in Artery - Aorta (x5.2) and Artery - Tibial (x4.5).
genes like me logo Genes that share expression patterns with CNTN4-AS1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for CNTN4-AS1 Gene

Orthologs for CNTN4-AS1 Gene

Evolution for CNTN4-AS1 Gene

ENSEMBL:
Gene Tree for CNTN4-AS1 (if available)
TreeFam:
Gene Tree for CNTN4-AS1 (if available)

No data available for Orthologs for CNTN4-AS1 Gene

Paralogs for CNTN4-AS1 Gene

No data available for Paralogs for CNTN4-AS1 Gene

Variants for CNTN4-AS1 Gene

Sequence variations from dbSNP and Humsavar for CNTN4-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs340824 -- 3,062,947(+) TTTGC(A/G)TGTTC upstream-variant-2KB
rs340825 -- 3,063,042(+) GAGGA(C/G)CTATT upstream-variant-2KB
rs340826 -- 3,063,074(+) AAAAA(A/G)TTATG upstream-variant-2KB
rs163575 -- 3,058,749(-) ACAGC(A/T)GGGAT intron-variant
rs163576 -- 3,058,965(+) ggctt(C/G/T)tcttc intron-variant

Relevant External Links for CNTN4-AS1 Gene

HapMap Linkage Disequilibrium report
CNTN4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CNTN4-AS1 Gene

Disorders for CNTN4-AS1 Gene

Relevant External Links for CNTN4-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CNTN4-AS1

No disorders were found for CNTN4-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CNTN4-AS1 Gene

Publications for CNTN4-AS1 Gene

No publications were found for CNTN4-AS1 Gene.

Products for CNTN4-AS1 Gene

Sources for CNTN4-AS1 Gene

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