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Aliases for CNTLN Gene

Aliases for CNTLN Gene

  • Centlein 2 3 3 5
  • Centlein, Centrosomal Protein 2 3
  • Centrosomal Protein 3 4
  • C9orf101 3 4
  • C9orf39 3 4
  • Chromosome 9 Open Reading Frame 101 2
  • Chromosome 9 Open Reading Frame 39 2
  • BA340N12.1 3

External Ids for CNTLN Gene

Previous HGNC Symbols for CNTLN Gene

  • C9orf101
  • C9orf39

Summaries for CNTLN Gene

GeneCards Summary for CNTLN Gene

CNTLN (Centlein) is a Protein Coding gene. Diseases associated with CNTLN include Meesmann Corneal Dystrophy and Seckel Syndrome 1. GO annotations related to this gene include protein kinase binding and protein binding, bridging.

UniProtKB/Swiss-Prot for CNTLN Gene

  • Required for centrosome cohesion and recruitment of CEP68 to centrosomes.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CNTLN Gene

Genomics for CNTLN Gene

Regulatory Elements for CNTLN Gene

Enhancers for CNTLN Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09F017322 1.5 VISTA 46.5 +188.3 188306 2.2 SMARCA4 CNTLN GC09M017401 GC09P017217
GH09F017082 0.4 ENCODE 20.5 -52.4 -52402 0.4 CTCF SMARCA4 TEAD4 ZIC2 RAD21 TRIM28 CNTLN RPS29P33 RN7SL720P
GH09F017290 0.6 Ensembl 18.5 +155.9 155919 0.2 CNTLN GC09P017217 GC09M017401
GH09F017057 0.2 ENCODE 11.2 -76.9 -76949 0.9 CEBPA CNTLN RN7SL720P RPS29P33
GH09F017204 0.5 ENCODE 10.4 +69.8 69776 0.2 CNTLN GC09P017217 PIR42398
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around CNTLN on UCSC Golden Path with GeneCards custom track

Promoters for CNTLN Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001300754 518 1801 ARID4B SIN3A DMAP1 ZNF2 YY1 GLIS2 KLF7 ZNF202 YY2 REST

Genomic Location for CNTLN Gene

17,134,982 bp from pter
17,503,923 bp from pter
368,942 bases
Plus strand

Genomic View for CNTLN Gene

Genes around CNTLN on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CNTLN Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CNTLN Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CNTLN Gene

Proteins for CNTLN Gene

  • Protein details for CNTLN Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Protein Accession:
    Secondary Accessions:
    • A5Z2X6
    • Q5VYJ0
    • Q8N1G9
    • Q9HAJ5

    Protein attributes for CNTLN Gene

    1405 amino acids
    Molecular mass:
    161603 Da
    Quaternary structure:
    • Interacts with CEP250 and CEP68. Interacts with NEK2; the interaction leads to phosphorylation of CNTLN.
    • Sequence=BAA91052.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAB13850.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Alternative splice isoforms for CNTLN Gene


neXtProt entry for CNTLN Gene

Post-translational modifications for CNTLN Gene

No data available for DME Specific Peptides for CNTLN Gene

Domains & Families for CNTLN Gene

Protein Domains for CNTLN Gene

Suggested Antigen Peptide Sequences for CNTLN Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CNTLN: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CNTLN Gene

Function for CNTLN Gene

Molecular function for CNTLN Gene

UniProtKB/Swiss-Prot Function:
Required for centrosome cohesion and recruitment of CEP68 to centrosomes.

Gene Ontology (GO) - Molecular Function for CNTLN Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0019901 protein kinase binding IPI 24554434
GO:0019904 protein domain specific binding IPI 24554434
GO:0030674 protein binding, bridging IMP 24554434
genes like me logo Genes that share ontologies with CNTLN: view

Phenotypes for CNTLN Gene

genes like me logo Genes that share phenotypes with CNTLN: view

Animal Model Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CNTLN Gene

Localization for CNTLN Gene

Subcellular locations from UniProtKB/Swiss-Prot for CNTLN Gene

Cytoplasm, cytoskeleton, microtubule organizing center, centrosome, centriole. Note=Colocalizes with gamma-tubulin during interphase and mitosis. Appears to associate with the mother centriole during G1 phase and with daughter centrioles towards G1/S phase (By similarity). Localizes to the proximal ends of the centrioles (PubMed:24554434). Levels are high at interphase centrosomes but are reduced on mitotic spindle poles (PubMed:24554434). {ECO:0000250 UniProtKB:A9ZSY0, ECO:0000269 PubMed:24554434}.

Subcellular locations from

Jensen Localization Image for CNTLN Gene COMPARTMENTS Subcellular localization image for CNTLN gene
Compartment Confidence
cytoskeleton 5
extracellular 5
nucleus 3
cytosol 2
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for CNTLN Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IDA 24554434
GO:0005814 centriole IEA,IDA 24554434
GO:0005856 cytoskeleton IEA --
GO:0070062 extracellular exosome IDA 19056867
genes like me logo Genes that share ontologies with CNTLN: view

Pathways & Interactions for CNTLN Gene

SuperPathways for CNTLN Gene

No Data Available

Interacting Proteins for CNTLN Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
Selected Interacting proteins: ENSP00000370021 Q9NXG0-CNTLN_HUMAN for CNTLN Gene via STRING IID

Gene Ontology (GO) - Biological Process for CNTLN Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0010457 centriole-centriole cohesion IMP 24554434
GO:0033365 protein localization to organelle IMP 24554434
genes like me logo Genes that share ontologies with CNTLN: view

No data available for Pathways by source and SIGNOR curated interactions for CNTLN Gene

Transcripts for CNTLN Gene

Unigene Clusters for CNTLN Gene

Centlein, centrosomal protein:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CNTLN Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^ 21 ^ 22 ^ 23
SP3: -

Relevant External Links for CNTLN Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CNTLN Gene

mRNA expression in normal human tissues for CNTLN Gene

Protein differential expression in normal tissues from HIPED for CNTLN Gene

This gene is overexpressed in Platelet (36.5), Plasma (12.9), and Urinary Bladder (12.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CNTLN Gene

NURSA nuclear receptor signaling pathways regulating expression of CNTLN Gene:


SOURCE GeneReport for Unigene cluster for CNTLN Gene:

genes like me logo Genes that share expression patterns with CNTLN: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CNTLN Gene

Orthologs for CNTLN Gene

This gene was present in the common ancestor of chordates.

Orthologs for CNTLN Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia CNTLN 34 35
  • 98.96 (n)
(Bos Taurus)
Mammalia CNTLN 34 35
  • 89.91 (n)
(Canis familiaris)
Mammalia CNTLN 34 35
  • 89.69 (n)
(Mus musculus)
Mammalia Cntln 34 16 35
  • 82.1 (n)
(Rattus norvegicus)
Mammalia Cntln 34
  • 81.32 (n)
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 69 (a)
-- 35
  • 59 (a)
(Monodelphis domestica)
Mammalia CNTLN 35
  • 49 (a)
(Gallus gallus)
Aves C9ORF39 34
  • 68.03 (n)
-- 35
  • 62 (a)
-- 35
  • 56 (a)
(Anolis carolinensis)
Reptilia CNTLN 35
  • 56 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia cntln 34
  • 61.78 (n)
African clawed frog
(Xenopus laevis)
Amphibia Xl.4694 34
(Danio rerio)
Actinopterygii si:ch211-2i17.1 34
  • 52.5 (n)
cntln 35
  • 36 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 30 (a)
Species where no ortholog for CNTLN was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CNTLN Gene

Gene Tree for CNTLN (if available)
Gene Tree for CNTLN (if available)

Paralogs for CNTLN Gene

(4) SIMAP similar genes for CNTLN Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with CNTLN: view

No data available for Paralogs for CNTLN Gene

Variants for CNTLN Gene

Sequence variations from dbSNP and Humsavar for CNTLN Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs10046851 -- 17,334,803(+) ATTGG(A/G)TACTG intron-variant
rs10114040 -- 17,407,100(+) GAATT(C/T)TGGGA intron-variant
rs10114083 -- 17,373,950(+) TGCCA(C/T)ATACA intron-variant
rs10114087 -- 17,407,204(+) TGTGA(C/T)ATTAA intron-variant
rs10114324 -- 17,310,687(+) cacca(A/G)caata intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CNTLN Gene

Variant ID Type Subtype PubMed ID
esv2422265 CNV duplication 17116639
esv2661216 CNV deletion 23128226
esv2666854 CNV deletion 23128226
esv2738244 CNV deletion 23290073
esv27469 CNV loss 19812545
esv27473 CNV loss 19812545
esv2764141 CNV loss 21179565
esv3304113 CNV mobile element insertion 20981092
esv3336164 CNV insertion 20981092
esv3544609 CNV deletion 23714750
esv3544610 CNV deletion 23714750
esv3544612 CNV deletion 23714750
esv3573158 CNV loss 25503493
esv3619834 CNV loss 21293372
esv3619835 CNV loss 21293372
esv3619836 CNV loss 21293372
esv3619837 CNV loss 21293372
esv3619839 CNV loss 21293372
esv3619840 CNV loss 21293372
esv3619842 CNV loss 21293372
esv3619843 CNV loss 21293372
esv3891627 CNV loss 25118596
esv3891628 CNV loss 25118596
esv3891629 CNV loss 25118596
nsv1015524 CNV loss 25217958
nsv1030291 CNV loss 25217958
nsv1031269 CNV loss 25217958
nsv1074844 CNV deletion 25765185
nsv1077094 CNV deletion 25765185
nsv1129301 CNV insertion 24896259
nsv1146643 CNV deletion 26484159
nsv416983 CNV deletion 16902084
nsv466269 CNV gain 19166990
nsv466270 CNV loss 19166990
nsv466273 CNV loss 19166990
nsv471287 CNV gain 18288195
nsv477833 CNV novel sequence insertion 20440878
nsv510184 OTHER sequence alteration 20534489
nsv522698 CNV loss 19592680
nsv523411 CNV gain 19592680
nsv526787 CNV loss 19592680
nsv613693 CNV gain 21841781
nsv613694 CNV loss 21841781
nsv613695 CNV loss 21841781
nsv613696 CNV loss 21841781
nsv613697 CNV loss 21841781
nsv613698 CNV loss 21841781
nsv613699 CNV loss 21841781
nsv957716 CNV deletion 24416366

Variation tolerance for CNTLN Gene

Residual Variation Intolerance Score: 89.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 11.99; 93.67% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CNTLN Gene

Human Gene Mutation Database (HGMD)
SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CNTLN Gene

Disorders for CNTLN Gene

MalaCards: The human disease database

(5) MalaCards diseases for CNTLN Gene - From: DISEASES

Disorder Aliases PubMed IDs
meesmann corneal dystrophy
  • corneal dystrophy, meesmann
seckel syndrome 1
  • seckel syndrome
joubert syndrome 1
  • joubert syndrome
meckel syndrome 1
  • meckel syndrome
leber congenital amaurosis
  • lca
- elite association - COSMIC cancer census association via MalaCards
Search CNTLN in MalaCards View complete list of genes associated with diseases

Relevant External Links for CNTLN

Genetic Association Database (GAD)
Human Genome Epidemiology (HuGE) Navigator
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
genes like me logo Genes that share disorders with CNTLN: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CNTLN Gene

Publications for CNTLN Gene

  1. Centlein mediates an interaction between C-Nap1 and Cep68 to maintain centrosome cohesion. (PMID: 24554434) Fang G. … Yuan L. (J. Cell. Sci. 2014) 3 4 64
  2. Genome-wide association study of lung function decline in adults with and without asthma. (PMID: 22424883) Imboden M. … Probst-Hensch N.M. (J. Allergy Clin. Immunol. 2012) 3 46 64
  3. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 46 64
  4. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey S.D. … Anand S. (Diabetes Care 2010) 3 46 64
  5. A genome-wide association study identifies a new ovarian cancer susceptibility locus on 9p22.2. (PMID: 19648919) Song H. … Gayther S.A. (Nat. Genet. 2009) 3 46 64

Products for CNTLN Gene

Sources for CNTLN Gene

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