Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CNTFR-AS1 Gene

Subcategory (RNA class) for CNTFR-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CNTFR-AS1 Gene

  • CNTFR Antisense RNA 1 2 3 5

External Ids for CNTFR-AS1 Gene

Summaries for CNTFR-AS1 Gene

GeneCards Summary for CNTFR-AS1 Gene

CNTFR-AS1 (CNTFR Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CNTFR-AS1 Gene

Genomics for CNTFR-AS1 Gene

Regulatory Elements for CNTFR-AS1 Gene

Enhancers for CNTFR-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G034501 0.6 ENCODE 12.1 -65.9 -65856 0.6 CTCF KLF1 NFIA MIER2 RAD21 ZFHX2 SMC3 HNRNPL EGR2 FAM219A ENSG00000232983 CNTFR-AS1 DNAI1 RPP25L ARID3C GALT SIGMAR1 PIR54959 RN7SKP24
GH09G034570 0.5 ENCODE 9.2 +2.7 2705 1.4 SCRT1 SCRT2 REST CNTFR-AS1 LOC105376023 GC09P034579
GH09G034441 0.4 Ensembl 11.2 -126.9 -126912 0.2 FOS FOXP2 ENSG00000232983 CNTFR-AS1 RPP25L ENHO ARID3C ENSG00000230729 DCTN3 DNAI1 C9orf24
GH09G034565 0.5 ENCODE 0.7 -1.7 -1698 1.1 POLR2A SMARCA4 KLF9 RPP25L PIGO CNTFR-AS1 GC09M034561
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CNTFR-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CNTFR-AS1 Gene

Chromosome:
9
Start:
34,568,012 bp from pter
End:
34,583,072 bp from pter
Size:
15,061 bases
Orientation:
Plus strand

Genomic View for CNTFR-AS1 Gene

Genes around CNTFR-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CNTFR-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CNTFR-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CNTFR-AS1 Gene

Proteins for CNTFR-AS1 Gene

Post-translational modifications for CNTFR-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CNTFR-AS1 Gene

Domains & Families for CNTFR-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CNTFR-AS1 Gene

Function for CNTFR-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CNTFR-AS1 Gene

Localization for CNTFR-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CNTFR-AS1 Gene

Pathways & Interactions for CNTFR-AS1 Gene

SuperPathways for CNTFR-AS1 Gene

No Data Available

Interacting Proteins for CNTFR-AS1 Gene

Gene Ontology (GO) - Biological Process for CNTFR-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CNTFR-AS1 Gene

Drugs & Compounds for CNTFR-AS1 Gene

No Compound Related Data Available

Transcripts for CNTFR-AS1 Gene

mRNA/cDNA for CNTFR-AS1 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CNTFR-AS1 Gene

No ASD Table

Relevant External Links for CNTFR-AS1 Gene

GeneLoc Exon Structure for
CNTFR-AS1
ECgene alternative splicing isoforms for
CNTFR-AS1

Expression for CNTFR-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CNTFR-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CNTFR-AS1 Gene

This gene is overexpressed in Testis (x17.6) and Muscle - Skeletal (x5.2).
genes like me logo Genes that share expression patterns with CNTFR-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CNTFR-AS1 Gene

Orthologs for CNTFR-AS1 Gene

Evolution for CNTFR-AS1 Gene

ENSEMBL:
Gene Tree for CNTFR-AS1 (if available)
TreeFam:
Gene Tree for CNTFR-AS1 (if available)

No data available for Orthologs for CNTFR-AS1 Gene

Paralogs for CNTFR-AS1 Gene

No data available for Paralogs for CNTFR-AS1 Gene

Variants for CNTFR-AS1 Gene

Sequence variations from dbSNP and Humsavar for CNTFR-AS1 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1000294345 -- 34,579,452(+) GAGAC(-/AG)AGACA intron-variant
rs1000605310 -- 34,569,960(+) CTCTC(C/G)CCCTC intron-variant
rs1000663865 -- 34,571,244(+) GAGAC(C/G)AGCAG intron-variant, downstream-variant-500B
rs1000799603 -- 34,570,410(+) AAGGA(C/T)GAGCA intron-variant, nc-transcript-variant
rs1000954881 -- 34,570,183(+) CCGGG(G/T)ACACT intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for CNTFR-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv12659n54 CNV loss 21841781
esv3620335 CNV gain 21293372
nsv1110013 CNV deletion 24896259
nsv1125318 OTHER inversion 24896259
nsv1161857 CNV deletion 26073780
nsv818699 CNV gain 17921354
nsv831543 CNV loss 17160897
nsv951699 CNV deletion 24416366

Relevant External Links for CNTFR-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CNTFR-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CNTFR-AS1 Gene

Disorders for CNTFR-AS1 Gene

Relevant External Links for CNTFR-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CNTFR-AS1

No disorders were found for CNTFR-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CNTFR-AS1 Gene

Publications for CNTFR-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for CNTFR-AS1 Gene

Sources for CNTFR-AS1 Gene

Content
Loading form....