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Aliases for CNPPD1 Gene

Aliases for CNPPD1 Gene

  • Cyclin Pas1/PHO80 Domain Containing 1 2 3 5
  • Cyclin Pas1/PHO80 Domain-Containing Protein 1 3 4
  • C2orf24 3 4
  • Chromosome 2 Open Reading Frame 24 2
  • CGI-57 3

External Ids for CNPPD1 Gene

Previous HGNC Symbols for CNPPD1 Gene

  • C2orf24

Previous GeneCards Identifiers for CNPPD1 Gene

  • GC02M220037

Summaries for CNPPD1 Gene

GeneCards Summary for CNPPD1 Gene

CNPPD1 (Cyclin Pas1/PHO80 Domain Containing 1) is a Protein Coding gene. GO annotations related to this gene include protein kinase binding.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CNPPD1 Gene

Genomics for CNPPD1 Gene

Regulatory Elements for CNPPD1 Gene

Enhancers for CNPPD1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around CNPPD1 on UCSC Golden Path with GeneCards custom track

Promoters for CNPPD1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around CNPPD1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CNPPD1 Gene

Chromosome:
2
Start:
219,171,897 bp from pter
End:
219,178,164 bp from pter
Size:
6,268 bases
Orientation:
Minus strand

Genomic View for CNPPD1 Gene

Genes around CNPPD1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CNPPD1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CNPPD1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CNPPD1 Gene

Proteins for CNPPD1 Gene

  • Protein details for CNPPD1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BV87-CNPD1_HUMAN
    Recommended name:
    Protein CNPPD1
    Protein Accession:
    Q9BV87
    Secondary Accessions:
    • B2RC77
    • O75548
    • Q9H4N0
    • Q9UQN0

    Protein attributes for CNPPD1 Gene

    Size:
    410 amino acids
    Molecular mass:
    45456 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CNPPD1 Gene

Proteomics data for CNPPD1 Gene at MOPED

Post-translational modifications for CNPPD1 Gene

  • Ubiquitination at Lys 341
  • Modification sites at PhosphoSitePlus

Other Protein References for CNPPD1 Gene

No data available for DME Specific Peptides for CNPPD1 Gene

Domains & Families for CNPPD1 Gene

Protein Domains for CNPPD1 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for CNPPD1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9BV87

UniProtKB/Swiss-Prot:

CNPD1_HUMAN :
  • Belongs to the CNPPD1 family.
Family:
  • Belongs to the CNPPD1 family.
genes like me logo Genes that share domains with CNPPD1: view

No data available for Gene Families for CNPPD1 Gene

Function for CNPPD1 Gene

Phenotypes for CNPPD1 Gene

GenomeRNAi human phenotypes for CNPPD1:
genes like me logo Genes that share phenotypes with CNPPD1: view

Animal Model Products

CRISPR Products

miRNA for CNPPD1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CNPPD1 Gene

Localization for CNPPD1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CNPPD1 Gene

Membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CNPPD1 Gene COMPARTMENTS Subcellular localization image for CNPPD1 gene
Compartment Confidence
cytosol 1
endoplasmic reticulum 1
extracellular 1
golgi apparatus 1
mitochondrion 1
nucleus 1
peroxisome 1
plasma membrane 1

No data available for Gene Ontology (GO) - Cellular Components for CNPPD1 Gene

Pathways & Interactions for CNPPD1 Gene

SuperPathways for CNPPD1 Gene

No Data Available

Interacting Proteins for CNPPD1 Gene

Gene Ontology (GO) - Biological Process for CNPPD1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CNPPD1 Gene

Drugs & Compounds for CNPPD1 Gene

No Compound Related Data Available

Transcripts for CNPPD1 Gene

Unigene Clusters for CNPPD1 Gene

Cyclin Pas1/PHO80 domain containing 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CNPPD1 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b · 4c · 4d · 4e ^ 5a · 5b ^ 6 ^ 7a · 7b ^ 8 ^ 9 ^ 10 ^ 11a · 11b
SP1: - - - - -
SP2: - - - -
SP3:
SP4: -
SP5:
SP6: -
SP7: - - - - - -
SP8:

Relevant External Links for CNPPD1 Gene

GeneLoc Exon Structure for
CNPPD1
ECgene alternative splicing isoforms for
CNPPD1

Expression for CNPPD1 Gene

mRNA expression in normal human tissues for CNPPD1 Gene

SOURCE GeneReport for Unigene cluster for CNPPD1 Gene Hs.4973

genes like me logo Genes that share expression patterns with CNPPD1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for CNPPD1 Gene

Orthologs for CNPPD1 Gene

This gene was present in the common ancestor of animals.

Orthologs for CNPPD1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia CNPPD1 35
  • 89.43 (n)
  • 89.76 (a)
C2H2ORF24 36
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CNPPD1 35
  • 90.08 (n)
  • 90.49 (a)
cfa-mir-1840 36
  • 91 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Cnppd1 35
  • 86.04 (n)
  • 85.47 (a)
Cnppd1 16
Cnppd1 36
  • 85 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia CNPPD1 35
  • 98.86 (n)
  • 98.29 (a)
CNPPD1 36
  • 98 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Cnppd1 35
  • 85.34 (n)
  • 84.77 (a)
oppossum
(Monodelphis domestica)
Mammalia CNPPD1 36
  • 75 (a)
OneToOne
chicken
(Gallus gallus)
Aves CNPPD1 35
  • 65.99 (n)
  • 64.03 (a)
lizard
(Anolis carolinensis)
Reptilia CNPPD1 36
  • 58 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia cnppd1 35
  • 57.78 (n)
  • 54.32 (a)
MGC75999 35
zebrafish
(Danio rerio)
Actinopterygii wufa05h07 35
cnppd1 36
  • 45 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG40191 36
  • 23 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea F09G2.2 36
  • 21 (a)
OneToOne
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.466 35
sea squirt
(Ciona savignyi)
Ascidiacea CSA.8044 36
  • 28 (a)
OneToOne
Species with no ortholog for CNPPD1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for CNPPD1 Gene

ENSEMBL:
Gene Tree for CNPPD1 (if available)
TreeFam:
Gene Tree for CNPPD1 (if available)

Paralogs for CNPPD1 Gene

No data available for Paralogs for CNPPD1 Gene

Variants for CNPPD1 Gene

Sequence variations from dbSNP and Humsavar for CNPPD1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1043160 - 219,173,034(-) CTGCA(C/T)CCCTA reference, missense
rs1127102 - 219,172,944(-) GTCTC(C/T)CGCTA reference, missense
rs17655123 - 219,172,722(+) ACCAG(A/G/T)GGCTG reference, missense
rs4674361 - 219,172,671(+) AAAGG(A/G)GCACC reference, missense
rs1043161 - 219,172,788(-) CCAGA(C/G)AGACT reference, missense

Structural Variations from Database of Genomic Variants (DGV) for CNPPD1 Gene

Variant ID Type Subtype PubMed ID
nsv875868 CNV Gain 21882294
nsv508200 CNV Loss 20534489
nsv875869 CNV Loss 21882294
nsv3170 CNV Loss 18451855

Variation tolerance for CNPPD1 Gene

Residual Variation Intolerance Score: 70.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 12.51; 94.39% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for CNPPD1 Gene

Disorders for CNPPD1 Gene

Relevant External Links for CNPPD1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CNPPD1

No disorders were found for CNPPD1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CNPPD1 Gene

Publications for CNPPD1 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 67
  2. Large-scale concatenation cDNA sequencing. (PMID: 9110174) Yu W. … Gibbs R.A. (Genome Res. 1997) 2 3
  3. A "double adaptor" method for improved shotgun library construction. (PMID: 8619474) Andersson B. … Gibbs R.A. (Anal. Biochem. 1996) 2 3
  4. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for CNPPD1 Gene

Sources for CNPPD1 Gene

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