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Aliases for CNPPD1 Gene

Aliases for CNPPD1 Gene

  • Cyclin Pas1/PHO80 Domain Containing 1 2 3
  • Cyclin Pas1/PHO80 Domain-Containing Protein 1 3 4
  • C2orf24 3 4
  • Chromosome 2 Open Reading Frame 24 2
  • Protein CNPPD1 3
  • CGI-57 3

External Ids for CNPPD1 Gene

Previous Symbols for CNPPD1 Gene

  • C2orf24

Summaries for CNPPD1 Gene

GeneCards Summary for CNPPD1 Gene

CNPPD1 (Cyclin Pas1/PHO80 Domain Containing 1) is a Protein Coding gene. GO annotations related to this gene include protein kinase binding.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CNPPD1 Gene

Genomics for CNPPD1 Gene

Genomic Location for CNPPD1 Gene

Start:
219,171,897 bp from pter
End:
219,178,163 bp from pter
Size:
6,267 bases
Orientation:
Minus strand

Genomic View for CNPPD1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CNPPD1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CNPPD1 Gene

No data available for Regulatory Elements for CNPPD1 Gene

Proteins for CNPPD1 Gene

  • Protein details for CNPPD1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BV87-CNPD1_HUMAN
    Recommended name:
    Protein CNPPD1
    Protein Accession:
    Q9BV87
    Secondary Accessions:
    • B2RC77
    • O75548
    • Q9H4N0
    • Q9UQN0

    Protein attributes for CNPPD1 Gene

    Size:
    410 amino acids
    Molecular mass:
    45456 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CNPPD1 Gene

Proteomics data for CNPPD1 Gene at MOPED

Post-translational modifications for CNPPD1 Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys341

Other Protein References for CNPPD1 Gene

No data available for DME Specific Peptides for CNPPD1 Gene

Domains for CNPPD1 Gene

Protein Domains for CNPPD1 Gene

InterPro:
Blocks:
ProtoNet:

UniProtKB/Swiss-Prot:

CNPD1_HUMAN
Family:
  • Belongs to the CNPPD1 family.:
    • Q9BV87
genes like me logo Genes that share domains with CNPPD1: view

No data available for Gene Families for CNPPD1 Gene

Function for CNPPD1 Gene

Gene Ontology (GO) - Molecular Function for CNPPD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0019901 protein kinase binding IEA --
genes like me logo Genes that share ontologies with CNPPD1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CNPPD1 Gene

Localization for CNPPD1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CNPPD1 Gene

Membrane; Single-pass membrane protein.

Gene Ontology (GO) - Cellular Components for CNPPD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with CNPPD1: view

Pathways for CNPPD1 Gene

SuperPathways for CNPPD1 Gene

No Data Available

Interacting Proteins for CNPPD1 Gene

Gene Ontology (GO) - Biological Process for CNPPD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEA --
genes like me logo Genes that share ontologies with CNPPD1: view

No data available for Pathways by source for CNPPD1 Gene

Transcripts for CNPPD1 Gene

Unigene Clusters for CNPPD1 Gene

Cyclin Pas1/PHO80 domain containing 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CNPPD1 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b · 4c · 4d · 4e ^ 5a · 5b ^ 6 ^ 7a · 7b ^ 8 ^ 9 ^ 10 ^ 11a · 11b
SP1: - - - - -
SP2: - - - -
SP3:
SP4: -
SP5:
SP6: -
SP7: - - - - - -
SP8:

Relevant External Links for CNPPD1 Gene

GeneLoc Exon Structure for
CNPPD1
ECgene alternative splicing isoforms for
CNPPD1

Expression for CNPPD1 Gene

mRNA expression in normal human tissues for CNPPD1 Gene

SOURCE GeneReport for Unigene cluster for CNPPD1 Gene Hs.4973

genes like me logo Genes that share expressions with CNPPD1: view

Orthologs for CNPPD1 Gene

This gene was present in the common ancestor of animals.

Orthologs for CNPPD1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CNPPD1 36
  • 98.86 (n)
  • 98.29 (a)
CNPPD1 37
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C2H2ORF24 37
  • 90 (a)
OneToOne
CNPPD1 36
  • 89.43 (n)
  • 89.76 (a)
dog
(Canis familiaris)
Mammalia cfa-mir-1840 37
  • 91 (a)
OneToOne
CNPPD1 36
  • 90.08 (n)
  • 90.49 (a)
mouse
(Mus musculus)
Mammalia Cnppd1 36
  • 86.04 (n)
  • 85.47 (a)
Cnppd1 16
Cnppd1 37
  • 85 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CNPPD1 37
  • 75 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Cnppd1 36
  • 85.34 (n)
  • 84.77 (a)
chicken
(Gallus gallus)
Aves CNPPD1 36
  • 65.99 (n)
  • 64.03 (a)
lizard
(Anolis carolinensis)
Reptilia CNPPD1 37
  • 58 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia cnppd1 36
  • 57.78 (n)
  • 54.32 (a)
MGC75999 36
zebrafish
(Danio rerio)
Actinopterygii cnppd1 37
  • 45 (a)
OneToOne
wufa05h07 36
fruit fly
(Drosophila melanogaster)
Insecta CG40191 37
  • 23 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea F09G2.2 37
  • 21 (a)
OneToOne
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.466 36
sea squirt
(Ciona savignyi)
Ascidiacea CSA.8044 37
  • 28 (a)
OneToOne
Species with no ortholog for CNPPD1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for CNPPD1 Gene

ENSEMBL:
Gene Tree for CNPPD1 (if available)
TreeFam:
Gene Tree for CNPPD1 (if available)

Paralogs for CNPPD1 Gene

No data available for Paralogs for CNPPD1 Gene

Variants for CNPPD1 Gene

Sequence variations from dbSNP and Humsavar for CNPPD1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs11236 -- 219,172,375(-) ATGCC(A/G)CCAGG utr-variant-3-prime
rs1043160 - 219,173,034(-) CTGCA(C/T)CCCTA missense, reference
rs1043161 - 219,172,788(-) CCAGA(C/G)AGACT missense, reference
rs1043162 -- 219,172,787(-) CAGAG(A/T)GACTC reference, missense
rs1127101 -- 219,175,608(-) AAATA(C/T)GTAGC synonymous-codon, reference

Structural Variations from Database of Genomic Variants (DGV) for CNPPD1 Gene

Variant ID Type Subtype PubMed ID
nsv875868 CNV Gain 21882294
nsv508200 CNV Loss 20534489
nsv875869 CNV Loss 21882294
nsv3170 CNV Loss 18451855

Relevant External Links for CNPPD1 Gene

HapMap Linkage Disequilibrium report
CNPPD1

Disorders for CNPPD1 Gene

No disorders were found for CNPPD1 Gene.

No data available for UniProtKB/Swiss-Prot for CNPPD1 Gene

Publications for CNPPD1 Gene

  1. A "double adaptor" method for improved shotgun library construction. (PMID: 8619474) Andersson B. … Gibbs R.A. (Anal. Biochem. 1996) 2 3
  2. Large-scale concatenation cDNA sequencing. (PMID: 9110174) Yu W. … Gibbs R.A. (Genome Res. 1997) 2 3
  3. Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics. (PMID: 10810093) Lai C.-H. … Lin W.-C. (Genome Res. 2000) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3

Products for CNPPD1 Gene

Sources for CNPPD1 Gene

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