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Aliases for CNPPD1 Gene

Aliases for CNPPD1 Gene

  • Cyclin Pas1/PHO80 Domain Containing 1 2 3 5
  • Cyclin Pas1/PHO80 Domain-Containing Protein 1 3 4
  • C2orf24 3 4
  • Chromosome 2 Open Reading Frame 24 2
  • Protein CNPPD1 3
  • CGI-57 3

External Ids for CNPPD1 Gene

Previous HGNC Symbols for CNPPD1 Gene

  • C2orf24

Previous GeneCards Identifiers for CNPPD1 Gene

  • GC02M220037

Summaries for CNPPD1 Gene

GeneCards Summary for CNPPD1 Gene

CNPPD1 (Cyclin Pas1/PHO80 Domain Containing 1) is a Protein Coding gene. GO annotations related to this gene include protein kinase binding.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CNPPD1 Gene

Genomics for CNPPD1 Gene

Regulatory Elements for CNPPD1 Gene

Enhancers for CNPPD1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G219244 1.4 ENCODE dbSUPER 11.5 -72.0 -71954 11.3 HDGF HNRNPUL1 PKNOX1 FOXA2 MLX CREB3L1 WRNIP1 ARID4B SIN3A FEZF1 GLB1L ZFAND2B ANKZF1 ATG9A DNAJB2 TUBA4A MIR153-1 PTPRN ENSG00000230432 CNPPD1
GH02G219121 1.5 Ensembl ENCODE dbSUPER 10.3 +53.1 53096 7.2 FOXA2 ATF1 ARID4B YBX1 TCF12 FOS SP5 KAT8 SREBF1 MIER3 SLC23A3 NHEJ1 IHH LOC100129175 MIR375 CRYBA2 FEV LINC00608 CNPPD1 RETREG2
GH02G219110 1.2 ENCODE dbSUPER 10.1 +65.9 65883 3.0 ELF3 FOXA2 ATF1 MLX ARID4B THRB ZNF48 ZSCAN9 RAD21 RARA IHH LOC100129175 MIR375 CRYBA2 FEV LINC00608 PTPRN NHEJ1 SLC23A3 CDK5R2
GH02G219200 0.9 ENCODE 12 -22.3 -22271 0.9 TBP PKNOX1 FEZF1 ZNF2 ZSCAN9 GATA4 ZSCAN5C ZNF391 ELF4 ZEB2 GLB1L CNPPD1 RETREG2 SLC23A3 NHEJ1 TTLL4 ZFAND2B GC02M219219 PIR34268
GH02G219142 0.9 ENCODE dbSUPER 10.7 +35.7 35671 0.2 CTCF SIN3A MNT DPF2 RAD21 FOXA1 SREBF1 E2F1 CTBP1 JUND IHH SLC23A3 LOC100129175 MIR375 RETREG2 CNPPD1 PTPRN ZFAND2B RESP18 NHEJ1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CNPPD1 on UCSC Golden Path with GeneCards custom track

Promoters for CNPPD1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000130512 664 3001 HDGF HNRNPUL1 FOXA2 MLX CREB3L1 ZFP64 ARID4B SIN3A FEZF1 DMAP1

Genomic Location for CNPPD1 Gene

Chromosome:
2
Start:
219,171,897 bp from pter
End:
219,178,164 bp from pter
Size:
6,268 bases
Orientation:
Minus strand

Genomic View for CNPPD1 Gene

Genes around CNPPD1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CNPPD1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CNPPD1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CNPPD1 Gene

Proteins for CNPPD1 Gene

  • Protein details for CNPPD1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BV87-CNPD1_HUMAN
    Recommended name:
    Protein CNPPD1
    Protein Accession:
    Q9BV87
    Secondary Accessions:
    • B2RC77
    • O75548
    • Q9H4N0
    • Q9UQN0

    Protein attributes for CNPPD1 Gene

    Size:
    410 amino acids
    Molecular mass:
    45456 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CNPPD1 Gene

Post-translational modifications for CNPPD1 Gene

  • Ubiquitination at Lys341
  • Modification sites at PhosphoSitePlus

Other Protein References for CNPPD1 Gene

No data available for DME Specific Peptides for CNPPD1 Gene

Domains & Families for CNPPD1 Gene

Protein Domains for CNPPD1 Gene

Suggested Antigen Peptide Sequences for CNPPD1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9BV87

UniProtKB/Swiss-Prot:

CNPD1_HUMAN :
  • Belongs to the CNPPD1 family.
Family:
  • Belongs to the CNPPD1 family.
genes like me logo Genes that share domains with CNPPD1: view

No data available for Gene Families for CNPPD1 Gene

Function for CNPPD1 Gene

Gene Ontology (GO) - Molecular Function for CNPPD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0019901 protein kinase binding IEA --
genes like me logo Genes that share ontologies with CNPPD1: view

Phenotypes for CNPPD1 Gene

GenomeRNAi human phenotypes for CNPPD1:
genes like me logo Genes that share phenotypes with CNPPD1: view

Animal Model Products

CRISPR Products

miRNA for CNPPD1 Gene

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CNPPD1 Gene

Localization for CNPPD1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CNPPD1 Gene

Membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CNPPD1 gene
Compartment Confidence
plasma membrane 1
extracellular 1
mitochondrion 1
peroxisome 1
nucleus 1
endoplasmic reticulum 1
cytosol 1
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for CNPPD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with CNPPD1: view

Pathways & Interactions for CNPPD1 Gene

SuperPathways for CNPPD1 Gene

No Data Available

Interacting Proteins for CNPPD1 Gene

Gene Ontology (GO) - Biological Process for CNPPD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEA --
genes like me logo Genes that share ontologies with CNPPD1: view

No data available for Pathways by source and SIGNOR curated interactions for CNPPD1 Gene

Drugs & Compounds for CNPPD1 Gene

No Compound Related Data Available

Transcripts for CNPPD1 Gene

Unigene Clusters for CNPPD1 Gene

Cyclin Pas1/PHO80 domain containing 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CNPPD1 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b · 4c · 4d · 4e ^ 5a · 5b ^ 6 ^ 7a · 7b ^ 8 ^ 9 ^ 10 ^ 11a · 11b
SP1: - - - - -
SP2: - - - -
SP3:
SP4: -
SP5:
SP6: -
SP7: - - - - - -
SP8:

Relevant External Links for CNPPD1 Gene

GeneLoc Exon Structure for
CNPPD1
ECgene alternative splicing isoforms for
CNPPD1

Expression for CNPPD1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CNPPD1 Gene

NURSA nuclear receptor signaling pathways regulating expression of CNPPD1 Gene:

CNPPD1

SOURCE GeneReport for Unigene cluster for CNPPD1 Gene:

Hs.4973

Evidence on tissue expression from TISSUES for CNPPD1 Gene

  • Kidney(4.4)
  • Intestine(4.3)
  • Nervous system(3.6)
genes like me logo Genes that share expression patterns with CNPPD1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for CNPPD1 Gene

Orthologs for CNPPD1 Gene

This gene was present in the common ancestor of animals.

Orthologs for CNPPD1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CNPPD1 34 35
  • 98.86 (n)
dog
(Canis familiaris)
Mammalia cfa-mir-1840 35
  • 91 (a)
OneToOne
CNPPD1 34
  • 90.08 (n)
cow
(Bos Taurus)
Mammalia C2H2ORF24 35
  • 90 (a)
OneToOne
CNPPD1 34
  • 89.43 (n)
mouse
(Mus musculus)
Mammalia Cnppd1 34 16 35
  • 86.04 (n)
rat
(Rattus norvegicus)
Mammalia Cnppd1 34
  • 85.34 (n)
oppossum
(Monodelphis domestica)
Mammalia CNPPD1 35
  • 75 (a)
OneToOne
chicken
(Gallus gallus)
Aves CNPPD1 34
  • 65.99 (n)
lizard
(Anolis carolinensis)
Reptilia CNPPD1 35
  • 58 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia cnppd1 34
  • 57.78 (n)
MGC75999 34
zebrafish
(Danio rerio)
Actinopterygii cnppd1 35
  • 45 (a)
OneToOne
wufa05h07 34
fruit fly
(Drosophila melanogaster)
Insecta CG40191 35
  • 23 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea F09G2.2 35
  • 21 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea CSA.8044 35
  • 28 (a)
OneToOne
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.466 34
Species where no ortholog for CNPPD1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for CNPPD1 Gene

ENSEMBL:
Gene Tree for CNPPD1 (if available)
TreeFam:
Gene Tree for CNPPD1 (if available)

Paralogs for CNPPD1 Gene

No data available for Paralogs for CNPPD1 Gene

Variants for CNPPD1 Gene

Sequence variations from dbSNP and Humsavar for CNPPD1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000271328 -- 219,176,030(+) AGATA(C/T)ATGTG intron-variant
rs1001437508 -- 219,175,922(+) CACTG(C/T)TGTTC intron-variant
rs1001505823 -- 219,174,614(+) AAAAA(C/T)TGGTT intron-variant
rs1001870314 -- 219,176,176(+) ACAAT(C/T)CCATT intron-variant
rs1002005708 -- 219,172,500(+) CCAGC(A/G)AGGCA nc-transcript-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for CNPPD1 Gene

Variant ID Type Subtype PubMed ID
esv3893555 CNV loss 25118596
nsv3170 CNV deletion 18451855
nsv508200 CNV deletion 20534489

Variation tolerance for CNPPD1 Gene

Residual Variation Intolerance Score: 70.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 12.51; 94.39% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CNPPD1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CNPPD1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CNPPD1 Gene

Disorders for CNPPD1 Gene

Relevant External Links for CNPPD1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CNPPD1

No disorders were found for CNPPD1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CNPPD1 Gene

Publications for CNPPD1 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  2. Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics. (PMID: 10810093) Lai C.-H. … Lin W.-C. (Genome Res. 2000) 3 4 64
  3. Large-scale concatenation cDNA sequencing. (PMID: 9110174) Yu W. … Gibbs R.A. (Genome Res. 1997) 2 3 64
  4. A "double adaptor" method for improved shotgun library construction. (PMID: 8619474) Andersson B. … Gibbs R.A. (Anal. Biochem. 1996) 2 3 64
  5. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3 64

Products for CNPPD1 Gene

Sources for CNPPD1 Gene

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