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Aliases for CNOT6LP1 Gene

Aliases for CNOT6LP1 Gene

  • CCR4-NOT Transcription Complex Subunit 6-Like Pseudogene 1 2 3 5
  • CCR4-NOT Transcription Complex, Subunit 6-Like Pseudogene 1 2

External Ids for CNOT6LP1 Gene

Previous GeneCards Identifiers for CNOT6LP1 Gene

  • GC15U900531
  • GC15M054083
  • GC15M056295

Summaries for CNOT6LP1 Gene

GeneCards Summary for CNOT6LP1 Gene

CNOT6LP1 (CCR4-NOT Transcription Complex Subunit 6-Like Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CNOT6LP1 Gene

Genomics for CNOT6LP1 Gene

Regulatory Elements for CNOT6LP1 Gene

Enhancers for CNOT6LP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15F055996 0.2 ENCODE 8.3 +8.6 8605 4.0 TBP JUN MAX GTF3C2 SMARCC2 FOS ZNF652 STAT1 SMARCC1 CEBPB RSL24D1 RFX7 NEDD4 CNOT6LP1 PRTG
GH15F055990 1.1 ENCODE 7.9 +14.1 14112 4.4 ATF1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF48 GTF3C2 GLIS2 ELK1 PRTG NEDD4 CNOT6LP1 GC15P055749
GH15F056000 0.2 ENCODE 4.4 +5.5 5543 1.3 IRF2 TAL1 GTF3C2 IRF9 SCRT2 NR2F6 TRIM24 ZSCAN29 KLF8 ZNF740 NEDD4 CNOT6LP1
GH15F056018 0.6 ENCODE 0.4 -10.9 -10899 0.2 SOX13 CTCF SAP130 CEBPG ZNF644 RARA SOX5 GATAD2A TFE3 TEAD1 NEDD4 RFX7 CNOT6LP1 RN7SL568P
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around CNOT6LP1 on UCSC Golden Path with GeneCards custom track

Promoters for CNOT6LP1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001795215 -21 1200 ZNF639 CEBPA CEBPB PRDM10 CEBPG CUX1 ZNF2

Genomic Location for CNOT6LP1 Gene

Chromosome:
15
Start:
56,003,305 bp from pter
End:
56,007,179 bp from pter
Size:
3,875 bases
Orientation:
Minus strand

Genomic View for CNOT6LP1 Gene

Genes around CNOT6LP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CNOT6LP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CNOT6LP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CNOT6LP1 Gene

Proteins for CNOT6LP1 Gene

Post-translational modifications for CNOT6LP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CNOT6LP1 Gene

Domains & Families for CNOT6LP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CNOT6LP1 Gene

Function for CNOT6LP1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CNOT6LP1 Gene

Localization for CNOT6LP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CNOT6LP1 Gene

Pathways & Interactions for CNOT6LP1 Gene

SuperPathways for CNOT6LP1 Gene

No Data Available

Interacting Proteins for CNOT6LP1 Gene

Gene Ontology (GO) - Biological Process for CNOT6LP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CNOT6LP1 Gene

Transcripts for CNOT6LP1 Gene

mRNA/cDNA for CNOT6LP1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CNOT6LP1 Gene

No ASD Table

Relevant External Links for CNOT6LP1 Gene

GeneLoc Exon Structure for
CNOT6LP1
ECgene alternative splicing isoforms for
CNOT6LP1

Expression for CNOT6LP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CNOT6LP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of CNOT6LP1 Gene:

CNOT6LP1
genes like me logo Genes that share expression patterns with CNOT6LP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CNOT6LP1 Gene

Orthologs for CNOT6LP1 Gene

Evolution for CNOT6LP1 Gene

ENSEMBL:
Gene Tree for CNOT6LP1 (if available)
TreeFam:
Gene Tree for CNOT6LP1 (if available)

No data available for Orthologs for CNOT6LP1 Gene

Paralogs for CNOT6LP1 Gene

No data available for Paralogs for CNOT6LP1 Gene

Variants for CNOT6LP1 Gene

Relevant External Links for CNOT6LP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CNOT6LP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CNOT6LP1 Gene

Disorders for CNOT6LP1 Gene

Relevant External Links for CNOT6LP1

Genetic Association Database (GAD)
CNOT6LP1

No disorders were found for CNOT6LP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CNOT6LP1 Gene

Publications for CNOT6LP1 Gene

  1. Common variants at 2q37.3, 8q24.21, 15q21.3 and 16q24.1 influence chronic lymphocytic leukemia risk. (PMID: 20062064) Crowther-Swanepoel D. … Houlston R.S. (Nat. Genet. 2010) 46 64
  2. Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study. (PMID: 17903294) Yang Q. … O'Donnell C.J. (BMC Med. Genet. 2007) 46 64

Products for CNOT6LP1 Gene

Sources for CNOT6LP1 Gene

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