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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

CNOT6 Gene

protein-coding   GIFtS: 60
GCID: GC05P179921

CCR4-NOT Transcription Complex, Subunit 6

  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
CCR4-NOT Transcription Complex, Subunit 61 2     KIAA11943 5
CCR42 3 5     Carbon Catabolite Repression 4 Protein2
Carbon Catabolite Repressor Protein 4 Homolog2 3     CCR4-NOT Transcription Complex Subunit 62
Cytoplasmic Deadenylase2 3     CCR4a3
EC 3.1.13.43 8     CCR4 Carbon Catabolite Repression 4-Like3

External Ids:    HGNC: 140991   Entrez Gene: 574722   Ensembl: ENSG000001133007   OMIM: 6089515   UniProtKB: Q9ULM63   

Export aliases for CNOT6 gene to outside databases

Previous GC identifers: GC00U990842 GC05P179855 GC05P179856 GC05P174644


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for CNOT6 Gene:
The protein encoded by this gene is a subunit of the CCR4-NOT core transcriptional regulation complex. The encoded
protein has a 3'-5' RNase activity and prefers polyadenylated substates. (provided by RefSeq, Jul 2008)

GeneCards Summary for CNOT6 Gene: 
CNOT6 (CCR4-NOT transcription complex, subunit 6) is a protein-coding gene. Diseases associated with CNOT6 include food allergy, and alcoholism, and among its related super-pathways are Deadenylation-dependent mRNA decay and Metabolism of RNA. GO annotations related to this gene include RNA binding and poly(A)-specific ribonuclease activity. An important paralog of this gene is ANGEL1.

UniProtKB/Swiss-Prot: CNOT6_HUMAN, Q9ULM6
Function: Poly(A) nuclease with 3'-5' RNase activity. Catalytic component of the CCR4-NOT complex which is one of
the major cellular mRNA deadenylases and is linked to various cellular processes including bulk mRNA degradation,
miRNA-mediated repression, translational repression during translational initiation and general transcription
regulation. Additional complex functions may be a consequence of its influence on mRNA expression. Involved in
mRNA decay mediated by the major-protein-coding determinant of instability (mCRD) of the FOS gene in the
cytoplasm. In the presence of ZNF335, enhances ligand-dependent transcriptional activity of nuclear hormone
receptors, including RARA. The increase of ligand-dependent ESR1-mediated transcription is much smaller, if any.
Mediates cell proliferation and cell survival and prevents cellular senescence

summary for CNOT6 Gene:
Chemokines (chemotactic cytokines) belong to a family of chemoattractant molecules involved in the directed
migration of immune cells. Over fifty human chemokines have been identified that can be categorised into
four groups; CC, CXC, CX3C and C (XCL1 and XCL2); depending on the spacing of their first two cysteine
residues. Chemokines exert their effects by binding to G-protein-coupled chemokine receptors on the surface
of cells, predominantly leukocytes. Eighteen human chemokine receptors have been identified that are
classified according to the class of chemokines that they bind. The major function of chemokines is to
regulate leukocyte trafficking in hematopoiesis and in innate and adaptive immunity. Other functions include
angiogenic activity, apoptosis, T-cell differentiation and phagocyte activation. Inadvertent activation of
chemokine receptors leads to autoimmunity by inappropriately targeting self antigens for destruction by
cytotoxic T-cells and macrophages.

Gene Wiki entry for CNOT6 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000005.9  NT_023133.13  NC_018916.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the CNOT6 gene promoter:
         AP-2rep   FOXF2   AP-4   E47   RORalpha1   FOXJ2 (long isoform)   Hand1   FOXO1a   FOXJ2   FOXO1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidCNOT6 promoter sequence
   Search SABiosciences Chromatin IP Primers for CNOT6

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CNOT6


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 5q35.3   Ensembl cytogenetic band:  5q35.3   HGNC cytogenetic band: 5q35.3

CNOT6 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CNOT6 gene location

GeneLoc information about chromosome 5         GeneLoc Exon Structure

GeneLoc location for GC05P179921:  view genomic region     (about GC identifiers)

Start:
179,921,412 bp from pter      End:
180,005,405 bp from pter
Size:
83,994 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: CNOT6_HUMAN, Q9ULM6 (See protein sequence)
Recommended Name: CCR4-NOT transcription complex subunit 6  
Size: 557 amino acids; 63307 Da
Cofactor: Magnesium
Subunit: Component of the CCR4-NOT complex; distinct complexes seem to exist that differ in the participation of
probably mutually exclusive catalytic subunits; the complex contains two deadenylase subunits, CNOT6 or CNOT6L,
and CNOT7 or CNOT8. Interacts with UNR and ZNF335
Subcellular location: Cytoplasm (Probable). Nucleus (Probable)
Secondary accessions: A7MD46 D3DWR0

Explore the universe of human proteins at neXtProt for CNOT6: NX_Q9ULM6

Explore proteomics data for CNOT6 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q9ULM6

  • 2 DME Specific Peptides for CNOT6 (Q9ULM6)
     PKSRARTM  NRVMTKDNI 

    CNOT6 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    CNOT6 Protein Expression
    REFSEQ proteins: NP_056270.2  
    ENSEMBL proteins: 
     ENSP00000377024   ENSP00000422087   ENSP00000261951  
    Reactome Protein details: Q9ULM6
    Human Recombinant Protein Products for CNOT6: 
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    Browse ProSpec Recombinant Proteins
    Cloud-Clone Corp. Proteins for CNOT6 

    Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IEA--
    GO:0005829cytosol TAS--
    GO:0030014CCR4-NOT complex IDA19558367

    CNOT6 for ontologies           About GeneDecksing



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    Cloud-Clone Corp. CLIAs for CNOT6


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    3 InterPro protein domains:
     IPR001611 Leu-rich_rpt
     IPR003591 Leu-rich_rpt_typical-subtyp
     IPR005135 Endo/exonuclease/phosphatase

    Graphical View of Domain Structure for InterPro Entry Q9ULM6

    ProtoNet protein and cluster: Q9ULM6

    UniProtKB/Swiss-Prot: CNOT6_HUMAN, Q9ULM6
    Similarity: Belongs to the CCR4/nocturin family
    Similarity: Contains 4 LRR (leucine-rich) repeats


    CNOT6 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: CNOT6_HUMAN, Q9ULM6
    Function: Poly(A) nuclease with 3'-5' RNase activity. Catalytic component of the CCR4-NOT complex which is one of
    the major cellular mRNA deadenylases and is linked to various cellular processes including bulk mRNA degradation,
    miRNA-mediated repression, translational repression during translational initiation and general transcription
    regulation. Additional complex functions may be a consequence of its influence on mRNA expression. Involved in
    mRNA decay mediated by the major-protein-coding determinant of instability (mCRD) of the FOS gene in the
    cytoplasm. In the presence of ZNF335, enhances ligand-dependent transcriptional activity of nuclear hormone
    receptors, including RARA. The increase of ligand-dependent ESR1-mediated transcription is much smaller, if any.
    Mediates cell proliferation and cell survival and prevents cellular senescence
    Catalytic activity: Exonucleolytic cleavage of poly(A) to 5'-AMP

         Enzyme Number (IUBMB): EC 3.1.13.41 2

         Gene Ontology (GO): 5 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003723RNA binding IEA--
    GO:0004532exoribonuclease activity IDA11889047
    GO:0004535poly(A)-specific ribonuclease activity TAS--
    GO:0005515protein binding IPI11747467
    GO:0046872metal ion binding IEA--
         
    CNOT6 for ontologies           About GeneDecksing


    Animal Models:
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    8/84 QIAGEN miScript miRNA Assays for microRNAs that regulate CNOT6 (see all 84):
    hsa-miR-520e hsa-miR-193a-3p hsa-miR-128 hsa-miR-30d hsa-miR-138-2* hsa-miR-371-5p hsa-miR-519a hsa-miR-30a
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CNOT6


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section

    SuperPaths for CNOT6 About                                                                                                See pathways by source

    SuperPathContained pathways About
    1Deadenylation-dependent mRNA decay
    Deadenylation-dependent mRNA decay0.49
    Deadenylation of mRNA0.47
    RNA degradation0.49
    2Metabolism of mRNA
    Metabolism of mRNA0.92
    Metabolism of RNA0.92
    3Generic Transcription Pathway
    Gene Expression0.47

    Pathways by source                                                                                                                                                                 See SuperPaths
    Show all pathways


    5        Reactome Pathways for CNOT6
        Deadenylation of mRNA
    Deadenylation-dependent mRNA decay
    Metabolism of RNA
    Metabolism of mRNA
    Gene Expression


    1         Kegg Pathway  (Kegg details for CNOT6):
        RNA degradation


    CNOT6 for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for CNOT6

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/133 Interacting proteins for CNOT6 (Q9ULM61, 3 ENSP000002619514) via UniProtKB, MINT, STRING, and/or I2D (see all 133)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    CNOT8Q9UFF91, 3, ENSP000002858964EBI-2104530,EBI-742299 I2D: score=8 STRING: ENSP00000285896
    CNOT1A5YKK61, 3, ENSP000003209494STRING: ENSP00000320949 EBI-2104530,EBI-1222758 I2D: score=6 
    ENSG00000206286Q8N1B43I2D: score=1 
    ENSG00000224455Q8N1B43I2D: score=1 
    ENSG00000225590Q8N1B43I2D: score=1 
    About this table

    Gene Ontology (GO): 5/14 biological process terms (GO ID links to tree view) (see all 14):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000288nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay TAS--
    GO:0000289nuclear-transcribed mRNA poly(A) tail shortening TAS--
    GO:0006351transcription, DNA-dependent IEA--
    GO:0006355regulation of transcription, DNA-dependent IEA--
    GO:0006417regulation of translation IEA--

    CNOT6 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Compounds for CNOT6 available from Tocris Bioscience    About this table
    CompoundAction CAS #
    RS 504393Highly selective CCR2 chemokine receptor antagonist[300816-15-3]
    MaravirocSelective CCR5 antagonist[376348-65-1]
    SB 225002Potent and selective CXCR2 antagonist[182498-32-4]
    SB 265610Potent CXCR2 antagonist[211096-49-0]
    TC 14012CXCR4 antagonist; CXCR7 agonist[368874-34-4]

    1 HMDB Compound for CNOT6    About this table
    CompoundSynonyms CAS #PubMed Ids
    Magnesium
    • Magnesium
    • Magnesium ions
    (see top 1)
    7439-95-4--

    Search CenterWatch for drugs/clinical trials and news about CNOT6

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for CNOT6 gene: 
    NM_015455.3  

    Unigene Cluster for CNOT6:

    CCR4-NOT transcription complex, subunit 6
    Hs.608380  [show with all ESTs]
    Unigene Representative Sequence: BC152469
    6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000510148 ENST00000393356(uc010jld.3) ENST00000507016 ENST00000502447
    ENST00000504343 ENST00000261951(uc003mlx.3 uc010jle.3)
    miRNA
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    8/84 QIAGEN miScript miRNA Assays for microRNAs that regulate CNOT6 (see all 84):
    hsa-miR-520e hsa-miR-193a-3p hsa-miR-128 hsa-miR-30d hsa-miR-138-2* hsa-miR-371-5p hsa-miR-519a hsa-miR-30a
    Browse SwitchGear 3'UTR luciferase reporter plasmids
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      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CNOT6

    Additional mRNA sequence: 

    AB033020.1 AK023599.1 AK314752.1 AL110144.1 BC015331.1 BC027476.1 BC073142.1 BC090918.1 
    BC114958.1 BC152469.1 

    10 DOTS entries:

    DT.115578  DT.101979531  DT.99934212  DT.100775630  DT.101957004  DT.92435297  DT.92435303  DT.95345830 
    DT.100737457  DT.97799052 

    24/268 AceView cDNA sequences (see all 268):

    AB033020 CA416373 AA361774 AA235905 CR617731 AI810439 AA603028 BM729275 
    CB306950 N90713 CR601971 BG231763 AA630737 AA227943 BC027476 AI744474 
    BP379655 CB959839 AA227814 BF476475 AI276566 AA479504 BU193854 AI187427 

    GeneLoc Exon Structure

    5/7 Alternative Splicing Database (ASD) splice patterns (SP) for CNOT6 (see all 7)    About this scheme

    ExUns: 1 ^ 2a · 2b · 2c · 2d ^ 3 ^ 4a · 4b ^ 5a · 5b ^ 6a · 6b ^ 7 ^ 8a · 8b ^ 9a · 9b · 9c ^ 10 ^ 11 ^ 12 ^ 13
    SP1:        -     -     -     -                                               -           -                                             
    SP2:                                                                          -                                                         
    SP3:                                -                                                                                                   
    SP4:                                                                                                                                    
    SP5:                                -                             -     -     -                                                         


    ECgene alternative splicing isoforms for CNOT6

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    CNOT6 expression in normal human tissues (normalized intensities)      CNOT6 embryonic expression: see
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: TGTCTTCCGT
    CNOT6 Expression
    About this image


    CNOT6 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database 
     5/15 selected tissues (see all 15) fully expand
     
     Brain (Nervous System)    fully expand to see all 8 entries
             Thalamus
             brain/midbrain   
     
     Neural Tube (Nervous System)    fully expand to see all 3 entries
             Metencephalon
     
     Heart (Cardiovascular System)    fully expand to see all 2 entries
             heart/atrium   
     
     Blood (Hematopoietic System)    fully expand to see all 2 entries
             cd4+ t cells   
     
     Limb (Muscoskeletal System)    fully expand to see all 2 entries
             limb/hindlimb   

    See CNOT6 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for CNOT6

    SOURCE GeneReport for Unigene cluster: Hs.608380
        SABiosciences Custom PCR Arrays for CNOT6
    Primer
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    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CNOT6
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CNOT6

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals and fungi.

    Orthologs for CNOT6 gene from 7/15 species (see all 15)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Cnot61 , 5 CCR4-NOT transcription complex, subunit 61, 5 92.27(n)1
    96.01(a)1
      11 (29.76 cM)5
    1046251  NM_212484.11  NP_997649.11 
     496715035 
    chicken
    (Gallus gallus)
    Aves CNOT61 CCR4-NOT transcription complex, subunit 6 86.18(n)
    95.69(a)
      416293  XM_414612.3  XP_414612.3 
    lizard
    (Anolis carolinensis)
    Reptilia CNOT66
    Uncharacterized protein
    93(a)
    1 ↔ 1
    2(141011047-141051754)
    zebrafish
    (Danio rerio)
    Actinopterygii Dr.249782 Danio rerio mRNA similar to KIAA1194 (cDNA clone IMAGE5413 more 78.97(n)    BC058309.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta twin1 CG31137-PA 59.3(n)
    59.05(a)
      42880  NM_170128.1  NP_732964.1 
    worm
    (Caenorhabditis elegans)
    Secernentea ccr-41 Protein CCR-4 57.1(n)
    51.76(a)
      178184  NM_001028437.1  NP_001023608.1 
    baker's yeast
    (Saccharomyces cerevisiae)
    Saccharomycetes CCR4(YAL021C)4 Component of the CCR4-NOT transcriptional complex, more   --   1(113359-110846) 851212  NP_009381.1 


    ENSEMBL Gene Tree for CNOT6 (if available)
    TreeFam Gene Tree for CNOT6 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for CNOT6 gene
    ANGEL12  CCRN4L2  PDE122  ANGEL22  CNOT6L2  
    1 SIMAP similar gene for CNOT6 using alignment to 3 protein entries:     CNOT6_HUMAN (see all proteins):
    CNOT6L

    CNOT6 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/1968 SNPs in CNOT6 are shown (see all 1968)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 5 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs733632191,2
    C,F--179919427(+) CCGCAC/TAACTC 1 -- us2k11Minor allele frequency- T:0.02WA 118
    rs1411184091,2
    C--179919464(+) GGGATG/TGCCAC 1 -- us2k10--------
    rs567554551,2
    C--179919468(+) TGGCCA/CCAGGC 1 -- us2k14Minor allele frequency- C:0.13NA WA EA 360
    rs1828402911,2
    --179919550(+) ATGGCA/GCTAGA 1 -- us2k10--------
    rs1502697971,2
    C--179919589(+) GCAGTA/GCCAAG 1 -- us2k10--------
    rs624054961,2
    C,F--179919618(+) CGTGCT/CGGGGA 1 -- us2k16Minor allele frequency- C:0.17NA WA EA 364
    rs624054971,2
    C--179919912(+) ATATAG/CCTCAA 1 -- us2k17Minor allele frequency- C:0.35NA WA EA 366
    rs100728351,2
    C,F--179919913(+) TATAGC/GTCAAA 1 -- us2k12Minor allele frequency- G:0.08WA NA 238
    rs728111271,2
    C--179919918(+) CTCAAT/ATTTTT 1 -- us2k11Minor allele frequency- A:0.00NA 2
    rs715770441,2
    C--179919924(+) TTTTT-/C/C   
       TT
    /TT
    TTTTT
    2 -- us2k1 cds11NA 2

    HapMap Linkage Disequilibrium report for CNOT6 (179921412 - 180005405 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 10/11 variations for CNOT6 (see all 11):    About this table     
    Variant IDTypeSubtypePubMed ID
    esv998085CNV Deletion20482838
    esv991928CNV Deletion20482838
    esv2731343CNV Deletion23290073
    esv2731344CNV Deletion23290073
    esv1078210CNV Deletion17803354
    esv1787252CNV Deletion17803354
    nsv509111CNV Insertion20534489
    nsv509110CNV Insertion20534489
    nsv519380CNV Loss19592680
    nsv823366CNV Loss20364138

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    OMIM gene information: 608951    OMIM disorders: --

    3 diseases for CNOT6:    About MalaCards
    food allergy    alcoholism    gastric cancer


    CNOT6 for disorders           About GeneDecksing

    1 Novoseek inferred disease relationship for CNOT6 gene    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    tumors 0 1 17641067 (1)

    Genetic Association Database (GAD): CNOT6

    Export disorders for CNOT6 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for CNOT6 gene, integrated from 9 sources (see all 41):
    (articles sorted by number of sources associating them with CNOT6)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. CCR4, a 3'-5' poly(A) RNA and ssDNA exonuclease, is the catalytic component of the cytoplasmic deadenylase. (PubMed id 11889047)1, 2, 3 Chen J.... Denis C.L. (2002)
    2. Components of the CCR4-NOT complex function as nuclear hormone receptor coactivators via association with the NRC-interacting Factor NIF-1. (PubMed id 18180299)1, 2, 9 Garapaty S....Samuels H.H. (2008)
    3. UNR, a new partner of poly(A)-binding protein, plays a key role in translationally coupled mRNA turnover mediated by the c-fos major coding-region determinant. (PubMed id 15314026)1, 2, 9 Chang T.-C.... Shyu A.-B. (2004)
    4. The Ccr4a (CNOT6) and Ccr4b (CNOT6L) deadenylase subu nits of the human Ccr4-Not complex contribute to the prevention of cell death a nd senescence. (PubMed id 21233283)1, 2 Mittal S....Winkler G.S. (2011)
    5. Human Ccr4-Not complexes contain variable deadenylase subunits. (PubMed id 19558367)1, 2 Lau N.C....Timmers H.T. (2009)
    6. Identification of four families of yCCR4- and Mg2+-dependent endonuclease-related proteins in higher eukaryotes, and characterization of orthologs of yCCR4 with a conserved leucine-rich repeat essential for hCAF1/hPOP2 binding. (PubMed id 11747467)1, 2 Dupressoir A....Heidmann T. (2001)
    7. Prediction of the coding sequences of unidentified human genes. XV. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 10574462)1, 2 Nagase T.... Ohara O. (1999)
    8. CCR4-NOT deadenylates mRNA associated with RNA-induce d silencing complexes in human cells. (PubMed id 20065043)2, 9 Piao X....Belasco J.G. (2010)
    9. Isolation and characterization of human orthologs of yeast CCR4-NOT complex subunits. (PubMed id 10637334)1, 9 Albert T.K....Timmers H.T. (2000)
    10. Methods for quantification of in vivo changes in prote in ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (2012)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 57472 HGNC: 14099 AceView: KIAA1194 Ensembl:ENSG00000113300 euGenes: HUgn57472
    ECgene: CNOT6 Kegg: 57472 H-InvDB: CNOT6

    (According to HUGE)
    About This Section
    HUGE: KIAA1194

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for CNOT6 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for CNOT6 gene:
    Search GeneIP for patents involving CNOT6

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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