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Aliases for CNNM3-DT Gene

Subcategory (RNA class) for CNNM3-DT Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CNNM3-DT Gene

  • CNNM3 Divergent Transcript 2 3
  • AC092636.1 5

External Ids for CNNM3-DT Gene

Summaries for CNNM3-DT Gene

GeneCards Summary for CNNM3-DT Gene

CNNM3-DT (CNNM3 Divergent Transcript) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CNNM3-DT Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CNNM3-DT Gene

Genomics for CNNM3-DT Gene

Regulatory Elements for CNNM3-DT Gene

Enhancers for CNNM3-DT Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02H096810 0.9 ENCODE 0.7 +2.6 2630 2.4 HDAC1 ELF3 PKNOX1 DMAP1 RAD21 THRB ZSCAN9 TCF12 GATA2 THAP11 LMAN2L CNNM4 CNNM3-DT PIR40637
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CNNM3-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for CNNM3-DT Gene

Genomic Locations for CNNM3-DT Gene
chr2:96,812,239-96,814,072
(GRCh38/hg38)
Size:
1,834 bases
Orientation:
Minus strand
chr2:97,477,976-97,480,170
(GRCh37/hg19)

Genomic View for CNNM3-DT Gene

Genes around CNNM3-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CNNM3-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CNNM3-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CNNM3-DT Gene

Proteins for CNNM3-DT Gene

Post-translational modifications for CNNM3-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for CNNM3-DT Gene

Domains & Families for CNNM3-DT Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CNNM3-DT Gene

Function for CNNM3-DT Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CNNM3-DT Gene

Localization for CNNM3-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CNNM3-DT Gene

Pathways & Interactions for CNNM3-DT Gene

SuperPathways for CNNM3-DT Gene

No Data Available

Interacting Proteins for CNNM3-DT Gene

Gene Ontology (GO) - Biological Process for CNNM3-DT Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CNNM3-DT Gene

Drugs & Compounds for CNNM3-DT Gene

No Compound Related Data Available

Transcripts for CNNM3-DT Gene

mRNA/cDNA for CNNM3-DT Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CNNM3-DT Gene

No ASD Table

Relevant External Links for CNNM3-DT Gene

GeneLoc Exon Structure for
CNNM3-DT
ECgene alternative splicing isoforms for
CNNM3-DT

Expression for CNNM3-DT Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CNNM3-DT Gene

Orthologs for CNNM3-DT Gene

Evolution for CNNM3-DT Gene

ENSEMBL:
Gene Tree for CNNM3-DT (if available)
TreeFam:
Gene Tree for CNNM3-DT (if available)

No data available for Orthologs for CNNM3-DT Gene

Paralogs for CNNM3-DT Gene

No data available for Paralogs for CNNM3-DT Gene

Variants for CNNM3-DT Gene

Sequence variations from dbSNP and Humsavar for CNNM3-DT Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs7585552 Likely benign 96,811,507(+) GAGGG(A/T)CATCA downstream-variant-500B, utr-variant-3-prime
rs538676167 Uncertain significance 96,811,491(+) ATCAT(C/T)CCTTC downstream-variant-500B, utr-variant-3-prime
rs886056483 Uncertain significance 96,811,454(+) CAACT(A/G)GCTGG downstream-variant-500B, utr-variant-3-prime
rs886056484 Uncertain significance 96,811,776(+) TTGTT(-/GTT)ATGAC downstream-variant-500B, utr-variant-3-prime, cds-indel
rs12846 Benign 96,811,637(+) TTCCA(A/C/T)GTAAG downstream-variant-500B, utr-variant-3-prime

Relevant External Links for CNNM3-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CNNM3-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CNNM3-DT Gene

Disorders for CNNM3-DT Gene

No disorders were found for CNNM3-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CNNM3-DT Gene

Publications for CNNM3-DT Gene

  1. Increased expression of long noncoding RNAs LOC100652951 and LOC100506036 in T cells from patients with rheumatoid arthritis facilitates the inflammatory responses. (PMID: 26616293) Lu MC … Lai NS (Immunologic research 2016) 2 3 60

Products for CNNM3-DT Gene

Sources for CNNM3-DT Gene

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