CNNM1 Gene
protein-coding GIFtS : 49
GCID: GC10 P101080
cyclin M1 (Previous symbol: ACDP1 )
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Aliasesfor CNNM1 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Cyclin M1 1 2 Ancient Conserved Domain Protein 12 ACDP11 2 3 5 Cyclin-M13 Ancient Conserved Domain-Containing Protein 12 3 Metal Transporter CNNM12 CLP-12 Cyclin-M13
Export aliases for CNNM1 gene to outside databases Previous GC identifers: GC10P099983 GC10P100323 GC10P101221 GC10P100754 GC10P094715
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Summariesfor CNNM1 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: CNNM1_HUMAN, Q9NRU3 Function : Probable metal transporter (By similarity)
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Genomic Viewsfor CNNM1 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000010.10 NC_018921.1 NT_030059.13 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the CNNM1 gene promoter: NF-1/L NF-1 Tal-1 Pax-5 Pax-2 Pax-2a c-Ets-1 HEN1 N-Myc Pax-4a Other transcription factors Search SABiosciences Chromatin IP Primers for CNNM1 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat CNNM1
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 10q24.2 Ensembl cytogenetic band: 10q24.2 HGNC cytogenetic band: 10q23-q24 CNNM1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 10 GeneLoc Exon Structure
GeneLoc location for GC10P101080: view genomic region
(about GC identifiers )
Start:
101,088,856 bp from pter
End:
101,154,087 bp from pter
Size:
65,232 bases
Orientation:
plus strand
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Proteinsfor CNNM1 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: CNNM1_HUMAN, Q9NRU3 (See
protein sequence )Recommended Name: Metal transporter CNNM1 Size : 951 amino acids; 104351 Da
Subcellular location : Cell membrane; Multi-pass membrane protein (By similarity)
Miscellaneous : Shares weak sequence similarity with the cyclin family, hence its name. However, it has no cyclin-likefunction in vivo
Sequence caution : Sequence=AAF86357.1; Type=Erroneous initiation; Sequence=AAH98103.2; Type=Erroneous initiation;Sequence=AAH98279.2; Type=Erroneous initiation; Sequence=AAH98307.2; Type=Erroneous initiation; Sequence=CAB70798.1; Type=Frameshift; Positions=839, 874;
Secondary accessions : Q4QQG7 Q4QQH8 Q4QQP9 Q9NT45Alternative splicing : 2 isoforms : Q9NRU3-1 Q9NRU3-2 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for CNNM1: NX_Q9NRU3 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q9NRU3 CNNM1 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_065081.2 ENSEMBL proteins: ENSP00000349147 ENSP00000406492 ENSP00000359559 ENSP00000359565 Human Recombinant Protein Products: Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005886 plasma membrane
IEA -- GO:0016021 integral to membrane
IEA --
CNNM1 for ontologies About GeneDecksing CNNM1 Antibody Products: Assay Products for CNNM1:
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Protein
Domains / Familiesfor CNNM1 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
CNNM1 for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q9NRU3 ProtoNet protein and cluster: Q9NRU3
1 Blocks protein family : IPB000644 CBS domain UniProtKB/Swiss-Prot: CNNM1_HUMAN, Q9NRU3 Similarity : Belongs to the ACDP familySimilarity : Contains 2 CBS domainsSimilarity : Contains 1 DUF21 domain
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Functionfor CNNM1 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: CNNM1_HUMAN, Q9NRU3 Function : Probable metal transporter (By similarity)
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for CNNM1 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for CNNM1 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: CNNM1 (NM_020348 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CNNM1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat CNNM1
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CNNM1
3 GenomeRNAi human phenotypes for CNNM1 :
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Pathways & Interactionsfor CNNM1 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CNNM1 1 Interacting protein for CNNM1 (Q9NRU3 3 ) via UniProtKB, MINT, STRING, and/or I2D About this table Gene Ontology (GO): 1 biological process term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0006811 ion transport
IEA --
CNNM1 for ontologies About GeneDecksing
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Drugs & Compoundsfor CNNM1 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for CNNM1 Search CenterWatch for drugs/clinical trials and news about CNNM1
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Transcriptsfor CNNM1 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for CNNM1 gene: NM_020348.2 Unigene Cluster for CNNM1:
Cyclin M1 Hs.274579 [show with all ESTs ] Unigene Representative Sequence: NM_020348 5 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000356713 (uc009xwe.3 uc001kpp.4 uc010qpi.2 uc009xwf.3 uc009xwg.3 )ENST00000488090 ENST00000446890 ENST00000370528 ENST00000370534 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for CNNM1 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for CNNM1 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: CNNM1 (NM_020348 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CNNM1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat CNNM1
Additional cDNA sequence: AF169226.1 AK056194.1 AK296545.1 AK299346.1 AK308326.1 AK308618.1 AK310486.1 AL137536.1 BC098103.1 BC098134.1 BC098279.1 BC098307.1 JF267782.1
4 DOTS entries : DT.308590 DT.100737928
DT.91748097 DT.91706557 24/35 AceView cDNA sequences (see all 35 ):
BM932302 BG117179 BM709460 AW296465 AK056194 AF169226 BI870106 NM_020348 BM692809 AL041768 BI868774 AA397733 BU733423 AL137536 BE780768 AA326530 BP369359 BM671372 CA420502 BM714452 AA399647 AL041769 BF963363 AA812661 GeneLoc Exon Structure 5/7 Alternative Splicing Database (ASD) splice patterns (SP) for CNNM1 (see all 7 ) About this scheme ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10a · 10b · 10c ^ 11 ^ 12 ^ 13 ^ 14a · 14b SP1 :       -   -   -             -       -             SP2 :       -   -   -             -       -     -         SP3 :         -   -             -                   SP4 :                                         SP5 :                                        
ECgene alternative splicing isoforms for CNNM1
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Expression for CNNM1 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section CNNM1 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: CAGGCTTCTT
About this image CNNM1 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See CNNM1 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for CNNM1 SOURCE GeneReport for Unigene cluster: Hs.274579 UniProtKB/Swiss-Prot: CNNM1_HUMAN, Q9NRU3 Tissue specificity : Restricted to brain and testis SABiosciences Custom PCR Arrays for CNNM1 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for CNNM1Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse / rat CNNM1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat CNNM1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat CNNM1 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CNNM1
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Orthologsfor CNNM1 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of eukaryotes.
Orthologs for CNNM1 gene from 8/25 species (see all 25 ) About this table
ENSEMBL Gene Tree for CNNM1 (if available)TreeFam Gene Tree for CNNM1 (if available)
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Paralogsfor CNNM1 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for CNNM1 gene CNNM3 2 CNNM2 2 CNNM4 2 4 SIMAP similar genes for CNNM1 using alignment to 4 protein entries: CNNM1_HUMAN (see all proteins ):DKFZp434I1016 CNNM4 CNNM2 CNNM3
CNNM1 for paralogs About GeneDecksing
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Genomic Variantsfor CNNM1 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 10 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for CNNM1 (101088856 - 101154087 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for CNNM1: --
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing CNNM1
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Disorders
/ Diseasesfor CNNM1 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
CNNM1 for disorders About GeneDecksing
OMIM gene information: 607802
OMIM disorders : --9 diseases for CNNM1 : About MalaCards cone-rod dystrophy amelogenesis imperfecta urofacial syndrome alzheimer's disease pneumonia tuberculosis malaria neuronitis mycobacterium tuberculosis 2 diseases from the University of Copenhagen DISEASES database for CNNM1 :cone-rod dystrophy Amelogenesis imperfecta Human Genome Epidemiology (HuGE) Navigator: CNNM1 (2 documents) Export disorders for CNNM1 gene to outside databases
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Publicationsfor CNNM1 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for CNNM1 gene, integrated from 9 sources (see all 12 ): (articles sorted by number of sources associating them with CNNM1) Utopia : connect your pdf to the dynamic world of online information
Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560) 1 , 2 Kimura K.... Sugano S. (2006) Molecular cloning and characterization of a novel gene family of four ancient conserved domain proteins (ACDP). (PubMed id 12657465) 1 , 2 Wang C.-Y.... She J.-X. (2003) A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci. (PubMed id 22412388) 1 Kenny E.E....Peter I. (2012) Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614) 1 Rose J.E....Uhl G.R. (2010) The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005) 2 Bechtel S.... Schupp I. (2007) A scan of chromosome 10 identifies a novel locus showing strong association with late-onset Alzheimer disease. (PubMed id 16385451) 1 Grupe A....Goate A. (2006) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 2 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 Ota T.... Sugano S. (2004) The DNA sequence and comparative analysis of human chromosome 10. (PubMed id 15164054) 2 Deloukas P.... Rogers J. (2004) Molecular cloning and characterization of the mouse Acdp gene family. (PubMed id 14723793) 1 Wang C.Y....She J.X. (2004)
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External Searches for CNNM1 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing CNNM1 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing CNNM1 gene
(According to HUGE )
About This Section --
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Specialized Databases showing CNNM1 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for CNNM1 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for CNNM1 gene: Search GeneIP for patents involving CNNM1 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor CNNM1 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for CNNM1 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for CNNM1 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for CNNM1 Browse OriGene Protein Over-expression Lysates Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for CNNM1 OriGene 3'-UTR Clone for CNNM1 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for CNNM1 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for CNNM1 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
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QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat CNNM1 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing CNNM1 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat CNNM1 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat CNNM1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat CNNM1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat CNNM1
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CNNM1 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CNNM1
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Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat CNNM1
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