Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

CNGB3 Gene

protein-coding   GIFtS: 56
GCID: GC08M087566

cyclic nucleotide gated channel beta 3

(Previous names: achromatopsia (rod monochromacy) 3, achromatopsia (rod...)
(Previous symbols: ACHM3, ACHM1, RMCH)
 Explore 16 diseases affiliated with
CNGB3 via our new
 Human Malady Compendium 
Biological research products
for CNGB3
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Cyclic Nucleotide Gated Channel Beta 31 2     Achromatopsia (Rod Monochromacy) 11
ACHM11 2 5     Achromatopsia (Rod Monochromacy) 31
Cyclic Nucleotide-Gated Cation Channel Modulatory Subunit2 3     Cone Photoreceptor CGMP-Gated Cation Channel Beta-Subunit2
CNG Channel Beta-32 3     Cyclic Nucleotide-Gated Cation Channel Beta-32
ACHM31 5     Cone Photoreceptor CGMP-Gated Channel Subunit Beta3
RMCH1     Cyclic Nucleotide-Gated Channel Beta-33

External Ids:    HGNC: 21531   Entrez Gene: 547142   Ensembl: ENSG000001702897   OMIM: 6050805   UniProtKB: Q9NQW83   

Export aliases for CNGB3 gene to outside databases

Previous GC identifers: GC08M086090 GC08M087318 GC08M087542 GC08M087541 GC08M087655 GC08M082795


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for CNGB3:
This gene encodes the beta subunit of a cyclic nucleotide-gated ion channel. The encoded beta subunit appears to play a
role in modulation of channel function in cone photoreceptors. This heterotetrameric channel is necessary for sensory
transduction, and mutations in this gene have been associated with achromatopsia 3, progressive cone dystrophy, and
juvenile macular degeneration, also known as Stargardt Disease. (provided by RefSeq, Feb 2010)

UniProtKB/Swiss-Prot: CNGB3_HUMAN, Q9NQW8
Function: Visual signal transduction is mediated by a G-protein coupled cascade using cGMP as second messenger. This
protein can be activated by cGMP which leads to an opening of the cation channel and thereby causing a depolarization
of rod photoreceptors. Induced a flickering channel gating, weakened the outward rectification in the presence of
extracellular calcium, increased sensitivity for L-cis diltiazem and enhanced the cAMP efficiency of the channel when
coexpressed with CNGA3 (By similarity). Essential for the generation of light-evoked electrical responses in the red-,
green- and blue sensitive cones

Gene Wiki entry for CNGB3 (Cyclic nucleotide gated channel beta 3)


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000008.10  NC_018919.1  NT_008046.16  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the CNGB3 gene promoter:
         USF1   GATA-3   Brachyury   GATA-1   GATA-2   HNF-1A   MEF-2A   HNF-1   USF-1   aMEF-2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidCNGB3 promoter sequence
   Search SABiosciences Chromatin IP Primers for CNGB3

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CNGB3


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 8q21.3   Ensembl cytogenetic band:  8q21.3   HGNC cytogenetic band: 8q21.3

CNGB3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CNGB3 gene location

GeneLoc information about chromosome 8         GeneLoc Exon Structure

GeneLoc location for GC08M087566:  view genomic region     (about GC identifiers)

Start:
87,566,205 bp from pter      End:
87,755,903 bp from pter
Size:
189,699 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: CNGB3_HUMAN, Q9NQW8 (See protein sequence)
Recommended Name: Cyclic nucleotide-gated cation channel beta-3  
Size: 809 amino acids; 92167 Da
Subunit: Heterooligomeric complex with CNGA3
Subcellular location: Membrane; Multi-pass membrane protein
Sequence caution: Sequence=AAF80179.1; Type=Erroneous initiation; Note=Translation N-terminally extended;
Secondary accessions: C9JA51 Q9NRE9
Alternative splicing: 2 isoforms:  Q9NQW8-1   Q9NQW8-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for CNGB3: NX_Q9NQW8

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q9NQW8

  • CNGB3 Protein expression data from MOPED and PaxDb:    About this image 
    CNGB3 Protein Expression
    REFSEQ proteins: NP_061971.3  
    ENSEMBL proteins: 
     ENSP00000428329   ENSP00000316605  

    Human Recombinant Protein Products for CNGB3: 
    Browse Purified and Recombinant Proteins at EMD Millipore
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Browse OriGene full length recombinant human proteins expressed in human HEK293 cells
    Browse OriGene Protein Over-expression Lysates
    OriGene Custom Protein Services for CNGB3 
    GenScript Custom Purified and Recombinant Proteins Services for CNGB3
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Browse Proteins at Uscn

    Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0001750photoreceptor outer segment IEA--
    GO:0016021integral to membrane IEA--

    CNGB3 for ontologies           About GeneDecksing



    CNGB3 Antibody Products: 
    Browse EMD Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Browse R&D Systems for Antibodies
    Browse OriGene Antibodies
    OriGene Custom Antibody Services for CNGB3 
    GenScript Custom Superior Antibodies Services for CNGB3
    Novus Biologicals CNGB3 Antibody
    Abcam antibodies for CNGB3 
    Browse Antibodies at Uscn
    Search ThermoFisher Antibodies for CNGB3

    Assay Products for CNGB3: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Immunoassay Development
    Browse OriGene Fluorogenic Cell Assay Kits
    Browse R&D Systems for biochemical assays
    GenScript Custom Assay Services for CNGB3
    Browse Enzo Life Sciences for kits & assays
    Browse ELISAs and CLIAs at Uscn


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    CNGB3 for domains           About GeneDecksing

    5 InterPro domains/families:
     IPR018488 cNMP-bd_CS
     IPR018490 cNMP-bd-like
     IPR005821 Ion_trans_dom
     IPR000595 cNMP-bd_dom
     IPR014710 RmlC-like_jellyroll

    Graphical View of Domain Structure for InterPro Entry Q9NQW8

    ProtoNet protein and cluster: Q9NQW8

    1 Blocks protein family: IPB000595 Cyclic nucleotide-binding domain

    UniProtKB/Swiss-Prot: CNGB3_HUMAN, Q9NQW8
    Similarity: Belongs to the cyclic nucleotide-gated cation channel (TC 1.A.1.5) family. CNGB3 subfamily
    Similarity: Contains 1 cyclic nucleotide-binding domain


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: CNGB3_HUMAN, Q9NQW8
    Function: Visual signal transduction is mediated by a G-protein coupled cascade using cGMP as second messenger. This
    protein can be activated by cGMP which leads to an opening of the cation channel and thereby causing a depolarization
    of rod photoreceptors. Induced a flickering channel gating, weakened the outward rectification in the presence of
    extracellular calcium, increased sensitivity for L-cis diltiazem and enhanced the cAMP efficiency of the channel when
    coexpressed with CNGA3 (By similarity). Essential for the generation of light-evoked electrical responses in the red-,
    green- and blue sensitive cones

         Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005223intracellular cGMP activated cation channel activity IEA--
    GO:0005515protein binding ----
    GO:0030553cGMP binding IEA--
         
    CNGB3 for ontologies           About GeneDecksing


    Phenotypes:
         3 MGI mutant phenotypes (inferred from 1 allele(MGI details for Cngb3):
     cellular  nervous system  vision/eye 

    CNGB3 for phenotypes           About GeneDecksing

    Animal Models:
         Mouse knock-out Cngb3tm1Dgen for CNGB3
       inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for CNGB3 

    miRNA
    Products:
        
    Browse 3'-UTR reporter clones for miRNA target validation
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat CNGB3
    8/36 QIAGEN miScript miRNA Assays for microRNAs that regulate CNGB3 (see all 36):
    hsa-miR-549 hsa-miR-361-5p hsa-miR-3938 hsa-miR-3146 hsa-miR-106a hsa-miR-30d hsa-miR-890 hsa-miR-30a
    SwitchGear 3'UTR luciferase reporter plasmidCNGB3 3' UTR sequence
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for CNGB3 (see all 4)
    OriGene shRNA RFP: CNGB3
    OriGene siRNA: CNGB3
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CNGB3
    Sirion Biotech Custom design and validation of potent shRNA sequences against CNGB3 

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for CNGB3
    Sirion Biotech Customized adenovirus for overexpression of CNGB3 
    Sirion Biotech Customized adenovirus for potent knockdown of CNGB3

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CNGB3 (see all 2)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CNGB3
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: CNGB3 (NM_019098)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for CNGB3
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CNGB3 

    Cell Line
    Products:
         
    GenScript Custom overexpressing Cell Line Services for CNGB3
    Search LifeMap BioReagents cell lines for CNGB3
    Sirion Biotech Customized stable knockdown cell line services for CNGB3 
    Sirion Biotech Customized inducible knockdown cell line services for CNGB3
    Sirion Biotech Customized stable overexpressing cell line services for CNGB3
    Sirion Biotech Customized inducible overexpressing cell line services for CNGB3

    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CNGB3


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/8 super-pathways (see all 8About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Activation of cAMP-Dependent PKA
    Activation of cAMP-Dependent PKA1.00
    PKA Signaling0.56
    cAMP Pathway0.77
    2Sweet Taste Signaling
    Cellular Effects of Sildenafil0.46
    Sperm Motility0.36
    3Potassium transporters: inward current
    Potassium transporters: inward current1.00
    4Visual Cycle in Retinal Rods
    Visual Cycle in Retinal Rods1.00
    5CREB Pathway
    Intracellular Calcium Signaling0.50

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    1 EMD Millipore Pathway for CNGB3
        Potassium transporters- inward current

    5/9 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for CNGB3 (see all 9)
        Cellular Effects of Sildenafil
    Cholera Infection
    PKA Signaling
    eNOS Signaling
    cAMP Pathway

    1 BioSystems Pathway for CNGB3 
        Visual signal transduction- Cones



    CNGB3 for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for CNGB3

    STRING Interaction Network Preview (showing 3 interactants - click image to see more details)

    3 Interacting proteins for CNGB3 (ENSP000003166054) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    CNGA3ENSP000002726024STRING: ENSP00000272602
    GNAT2ENSP000002513374STRING: ENSP00000251337
    PDE6CENSP000003605024STRING: ENSP00000360502
    About this table

    Gene Ontology (GO): 3 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006810transport NAS10888875
    GO:0007165signal transduction NAS10888875
    GO:0007601visual perception IEA--

    CNGB3 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for CNGB3

    3 HMDB Compounds for CNGB3    About this table
    CompoundSynonyms CAS #PubMed Ids
    CalciumCa (see all 2)7440-70-2--
    Cyclic AMPCyclic AMP (see all 19)60-92-4--
    Cyclic GMP3',5'-cyclic GMP (see all 13)7665-99-8--
    Search CenterWatch for drugs/clinical trials and news about CNGB3 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for CNGB3 gene: 
    NM_019098.4  

    Unigene Cluster for CNGB3:

    Cyclic nucleotide gated channel beta 3
    Hs.154433  [show with all ESTs]
    Unigene Representative Sequence: AF272900
    3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000517327 ENST00000320005(uc010maj.3 uc003ydx.3) ENST00000519777


    miRNA
    Products:
         
    Browse 3'-UTR reporter clones for miRNA target validation
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat CNGB3
    8/36 QIAGEN miScript miRNA Assays for microRNAs that regulate CNGB3 (see all 36):
    hsa-miR-549 hsa-miR-361-5p hsa-miR-3938 hsa-miR-3146 hsa-miR-106a hsa-miR-30d hsa-miR-890 hsa-miR-30a
    SwitchGear 3'UTR luciferase reporter plasmidCNGB3 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for CNGB3 (see all 4)
    OriGene shRNA RFP: CNGB3
    OriGene siRNA: CNGB3
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CNGB3
    Sirion Biotech Custom design and validation of potent shRNA sequences against CNGB3 
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CNGB3 (see all 2)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CNGB3
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: CNGB3 (NM_019098)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for CNGB3
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CNGB3 
    Primer
    Products:
        
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for CNGB3
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat CNGB3
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CNGB3
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CNGB3

    Additional cDNA sequence: 

    AF228520.1 AF272900.1 BC150601.1 DQ426865.1 

    2 DOTS entries:

    DT.40263981  DT.426629 

    24/35 AceView cDNA sequences (see all 35):

    AF228520 AA064798 BF725469 BF725470 CA397799 AA702094 AV726367 AA064967 
    AA069559 AA707769 AA317961 AA723276 BX104558 BX118844 H53424 AA718978 
    BI827605 NM_019098 AA069498 AF272900 AL713036 AI150392 AA064756 AA708280 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    CNGB3 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: --
    CNGB3 Expression
    About this image

    CNGB3 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table

    4 LifeMap In Vivo Development Anatomical Compartments/Cells 
    Tissue Anatomical Compartment CellCategory (developmental path)
    EyeOuter Nuclear LayerMature M Cone CellsPhotoreceptors, Retina
    EyeOuter Nuclear LayerMature M-S Cone CellsPhotoreceptors, Retina
    EyeOuter Nuclear LayerMature S Cone CellsPhotoreceptors, Retina
    EyeOuter Nuclear LayerMature L Cone CellsPhotoreceptors, Retina
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See CNGB3 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for CNGB3

    SOURCE GeneReport for Unigene cluster: Hs.154433

    UniProtKB/Swiss-Prot: CNGB3_HUMAN, Q9NQW8
    Tissue specificity: Expressed specifically in the retina

        SABiosciences Expression via Pathway-Focused PCR Array including CNGB3: 
              Hypertension in human mouse rat

    Primer
    Products:
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for CNGB3
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat CNGB3
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CNGB3
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CNGB3
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CNGB3

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for CNGB3 gene from 5/20 species (see all 20)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves CNGB31 cyclic nucleotide gated channel beta 3 69.74(n)
    67.69(a)
      428367  XM_425928.3  XP_425928.3 
    lizard
    (Anolis carolinensis)
    Reptilia CNGB36
    --
    61(a)
    1 ↔ 1
    4(22722671-22755492)
    zebrafish
    (Danio rerio)
    Actinopterygii LOC5624661 cyclic nucleotide-gated cation channel beta-3-like 58.81(n)
    55.42(a)
      562466  XM_685845.3  XP_690937.3 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG179221 , 3 intracellular cyclic nucleotide activated
    cation more3
    CG179221
    40(a)3
    44.77(n)1
    36.89(a)1
      57F93
    374791  NM_137763.31  NP_611607.21 
    worm
    (Caenorhabditis elegans)
    Secernentea tax-21 Protein TAX-2 48.18(n)
    37.36(a)
      172723  NM_060026.5  NP_492427.3 


    ENSEMBL Gene Tree for CNGB3 (if available)
    TreeFam Gene Tree for CNGB3 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for CNGB3 gene
    KCNH62  KCNH32  KCNH52  HCN32  HCN42  HCN22  KCNH42  CNGA22  
    CNGA12  HCN12  KCNH72  KCNH22  CNGB12  CNGA42  CNGA32  KCNH12  
    KCNH82  
    5 SIMAP similar genes for CNGB3 using alignment to 4 protein entries:     CNGB3_HUMAN (see all proteins):
    CNGB1    CNGA3    CNGA2    CNGA1    CNGA4

    CNGB3 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/3138 NCBI SNPs in CNGB3 are shown (see all 3138    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 8 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs353654131,2
    C,Fpathogenic82850662(+) GGAGTA/CATTGT 2 D Y mis14Minor allele frequency- C:0.00NA 4632
    rs358074061,2
    C,Funtested82965024(+) CTTCAT/CTCCGA 2 /N /S mis16Minor allele frequency- C:0.01NA EU 6074
    rs1998802151,2
    C--82795645(+) ATGGGA/GTTGAA 1 -- ut310--------
    rs10593381,2
    H--82795883(-) ATATGC/TTTTCC 1 -- ut31 trp37Minor allele frequency- T:0.01MN NS EA NA 608
    rs176832841,2
    C,F,H--82796148(+) TGACTC/TTATCA 1 -- ut3118Minor allele frequency- T:0.04NA NS EA 2054
    rs789271551,2
    --82796268(+) GTTACA/GGTGAC 1 -- ut310--------
    rs777763341,2
    --82796327(+) TACACT/GAATGG 1 -- ut311Minor allele frequency- G:0.01WA 118
    rs169158591,2
    C,F,H--82796671(+) CCTGTA/GTCCTC 1 -- ut31 ese313Minor allele frequency- G:0.04NA NS EA WA 1352
    rs732696011,2
    C--82796714(+) TAGATT/CGGTGT 1 -- ut312Minor allele frequency- C:0.17WA 120
    rs1168359801,2
    C,F--82796828(+) TCTGCC/TGACCA 1 -- ut311Minor allele frequency- T:0.02WA 118

    HapMap Linkage Disequilibrium report for CNGB3 (87566205 - 87755903 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 4 variations for CNGB3
         4 CNVs: 10261 65189 65187 5257
    Human Gene Mutation Database (HGMD): CNGB3

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing CNGB3
    DNA2.0 Custom Variant and Variant Library Synthesis for CNGB3

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    CNGB3 for disorders           About GeneDecksing

    OMIM gene information: 605080   
    OMIM disorders: 262300  248200  
    UniProtKB/Swiss-Prot: CNGB3_HUMAN, Q9NQW8
  • Defects in CNGB3 are the cause of Stargardt disease type 1 (STGD1) [MIM:248200]. STGD is one of the most
  • frequent causes of macular degeneration in childhood. It is characterized by macular dystrophy with juvenile-onset,
    rapidly progressive course, alterations of the peripheral retina, and subretinal deposition of lipofuscin-like
    material. STGD1 inheritance is autosomal recessive
  • Defects in CNGB3 are the cause of achromatopsia type 3 (ACHM3) [MIM:262300]; also known as Pingelapese
  • blindness. ACHM3 is a congenital complete achromatopsia and is distinct from total colorblindness mainly because of
    the consistent concurrence of severe myopia

    16 diseases for CNGB3:    About MalaCards
    achromatopsia    achromatopsia 3    macular degeneration    stargardt disease
    cone dystrophy    blue cone monochromacy    color blindness    congenital nystagmus
    macular dystrophy    nystagmus    myopia    blindness
    retinal disease    retinitis    hypertension    neuronitis

    4 diseases from the University of Copenhagen DISEASES database for CNGB3:
    Achromatopsia     Color blindness     Congenital nystagmus     Blue cone monochromacy

    1 Novoseek disease relationship for CNGB3 gene    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    achromatopsia 98.3 28 15657609 (3), 20079539 (2), 16319819 (2), 17652762 (2) (see all 17)

    GeneTests: CNGB3
    Achromatopsia

    Genetic Association Database (GAD): CNGB3
    Human Genome Epidemiology (HuGE) Navigator: CNGB3 (4 documents)

    Export disorders for CNGB3 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for CNGB3 gene, integrated from 9 sources (see all 45):
    (articles sorted by number of sources associating them with CNGB3)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. CNGB3 mutations account for 50% of all cases with autosomal recessive achromatopsia. (PubMed id 15657609)1, 2, 4, 9 Kohl S....Wissinger B. (2005)
    2. Mutations in the CNGB3 gene encoding the beta-subunit of the cone photoreceptor cGMP-gated channel are responsible for achromatopsia (ACHM3) linked to chromosome 8Q21. (PubMed id 10958649)1, 2, 3, 9 Kohl S.... Wissinger B. (2000)
    3. Genetic basis of total colourblindness among the Pingelapese islanders. (PubMed id 10888875)1, 2, 3 Sundin O.H.... Maumenee I.H. (2000)
    4. Cone cGMP-gated channel mutations and clinical findings in patients with achromatopsia, macular degeneration, and other hereditary cone diseases. (PubMed id 15712225)1, 2, 9 Nishiguchi K.M....Dryja T.P. (2005)
    5. Achromatopsia caused by novel mutations in both CNGA3 and CNGB3. (PubMed id 14757870)1, 2, 9 Johnson S....Hunt D.M. (2004)
    6. International Union of Pharmacology. LI. Nomenclature and structure-function relationships of cyclic nucleotide-regulated channels. (PubMed id 16382102)1, 3 Hofmann F....Kaupp U.B. (2005)
    7. Impaired cone function and cone degeneration resultin g from CNGB3 deficiency: down-regulation of CNGA3 biosynthesis as a potential m echanism. (PubMed id 19767295)1, 9 Ding X.Q....Barlow R.B. (2009)
    8. Comprehensive analysis of the achromatopsia genes CNG A3 and CNGB3 in progressive cone dystrophy. (PubMed id 20079539)1, 9 Thiadens A.A....Klaver C.C. (2010)
    9. CNGB3 achromatopsia with progressive loss of residual cone function and impaired rod-mediated function. (PubMed id 17652762)1, 9 Khan N.W....Sieving P.A. (2007)
    10. Functionally important calmodulin-binding sites in both NH2- and COOH-terminal regions of the cone photoreceptor cyclic nucleotide-gated channel CNGB3 subunit. (PubMed id 12730238)1, 9 Peng C....Varnum M.D. (2003)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 54714 HGNC: 2153 AceView: CNGB3 Ensembl:ENSG00000170289 euGenes: HUgn54714
    ECgene: CNGB3 H-InvDB: CNGB3

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for CNGB3 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for CNGB3 Genetics and Cytogenetics in Oncology and Haematology
    GeneReviewshttp://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/CNGB3

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for CNGB3 gene:
    Search GeneIP for patents involving CNGB3

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
    About This Section

     
     EMD Millipore Custom Antibody & Bulk Services
     EMD Millipore Preclinical / Clinical Development Services
     EMD Millipore Immunoassay Services
     EMD Millipore Target Screening & Profiling Services

      
     Browse Antibodies   Browse Cell Culture Products  
     Browse ELISAs   Browse Flow Cytometry Kits  
     Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
     Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
     Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
     Browse DNA Damage/Repair Kits/Reagents   Browse Multiplex/Array Assay Kits/Reagents  
     Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
     Browse Phosphatase Activity Assays/Reagents   Browse Recombinant/Natural Proteins  
     Browse OriGene Antibodies   OriGene shRNA RFP for CNGB3  
     OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for CNGB3   OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for CNGB3  
     Browse OriGene Protein Over-expression Lysates   Browse OriGene Fluorogenic Cell Assay Kits  
     OriGene siRNA for CNGB3   Browse 3'-UTR reporter clones for miRNA target validation  
     OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CNGB3   OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CNGB3  
     Browse OriGene GFP tagged cDNA clones in CMV expression vector   Browse OriGene MicroRNA Expression Plasmids  
     Browse OriGene basic RS shRNAs   Browse OriGene validated miRNA SYBR primer pairs  
     Browse OriGene full length recombinant human proteins expressed in human HEK293 cells   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for CNGB3   OriGene Custom Protein Services for CNGB3  
     OriGene Custom Immunoassay Development  

     
     
     QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat CNGB3
     QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing CNGB3
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CNGB3
     QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CNGB3
     QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CNGB3
     QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CNGB3
     GenScript Custom Purified and Recombinant Proteins Services for CNGB3 GenScript cDNA clones with any tag delivered in your preferred vector for CNGB3
     GenScript Custom Assay Services for CNGB3 GenScript Custom Superior Antibodies Services for CNGB3
     GenScript Custom overexpressing Cell Line Services for CNGB3 CloneReady with Over 120,000 Genes
     Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
     Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
     Custom Peptide Services
     Search for Antibodies & Assays

     Regulatory tfbs in CNGB3 promoter
     Search Chromatin IP Primers for CNGB3
     RT2 qPCR Primer Assay in human, mouse, rat CNGB3
     GNC Network for CNGB3
     SABiosciences PCR Arrays including human, mouse, rat CNGB3
     Search Tocris compounds for CNGB3
     Browse Sino Biological Proteins and Antibodies
     Browse Sino Biological cDNA Clones
     Antibodies/Proteins Production Services
     Rabbit Monoclonal Antibody Platform
     Bulk Purchasing
     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
     Novus Tissue Slides
     CNGB3 antibodies
     Antibodies for CNGB3
     See all of Abcam's Antibodies, Kits and Proteins for CNGB3
     Custom Antibody / Protein Production Service
     Bulk Purchasing
     Advantages of Rabbit Monoclonal antibodies
     Abcam protocols and scientific support
     Browse ProSpec Recombinant Proteins




     Browse ELISAs, CLIAs, Proteins, and Antibodies at Uscn
     Search LifeMap BioReagents cell lines for CNGB3
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
     Codon Optimization
     Protein Production and Purification
     Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CNGB3
     SwitchGear 3'UTR luciferase reporter plasmids for CNGB3
     SwitchGear Promoter luciferase reporter plasmids for CNGB3
     Search ThermoFisher Antibodies for CNGB3
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CNGB3
     inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for CNGB3
    Sirion Biotech Customized:
     stable knockdown cell line services for CNGB3
     inducible knockdown cell line services for CNGB3
     design and validation of potent shRNA sequences against CNGB3
     adenovirus for potent knockdown of CNGB3
     adenovirus for overexpression of CNGB3
     stable overexpressing cell line services for CNGB3
     inducible overexpressing cell line services for CNGB3
           
    GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013 , 14 May 2013

    View Random Gene

    Category
    VWF
    (GIFTS: 73)
    von Willebrand factor
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    Hot genes      Disease genes      CNGB3 gene at Home site.
    hostname: 356977-web1.xennexinc.com index build: 106 solr: 1.4