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Aliases for CMTM8 Gene

Aliases for CMTM8 Gene

  • CKLF Like MARVEL Transmembrane Domain Containing 8 2 3 5
  • Chemokine-Like Factor Superfamily Member 8 3 4
  • CKLFSF8 3 4
  • CKLF-Like MARVEL Transmembrane Domain-Containing Protein 8 3
  • CKLF-Like MARVEL Transmembrane Domain Containing 8 2
  • Chemokine-Like Factor Super Family 8 2
  • Chemokine-Like Factor Superfamily 8 2
  • CKLFSF8-V2 3

External Ids for CMTM8 Gene

Previous HGNC Symbols for CMTM8 Gene

  • CKLFSF8

Previous GeneCards Identifiers for CMTM8 Gene

  • GC03P032256
  • GC03P032217
  • GC03P032280

Summaries for CMTM8 Gene

Entrez Gene Summary for CMTM8 Gene

  • This gene belongs to the chemokine-like factor gene superfamily, a novel family that is similar to the chemokine and the transmembrane 4 superfamilies. This gene is one of several chemokine-like factor genes located in a cluster on chromosome 3. This gene acts as a tumor suppressor, and plays a role in regulating the migration of tumor cells. The encoded protein is thought to function as a a negative regulator of epidermal growth factor-induced signaling. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Feb 2016]

GeneCards Summary for CMTM8 Gene

CMTM8 (CKLF Like MARVEL Transmembrane Domain Containing 8) is a Protein Coding gene. GO annotations related to this gene include cytokine activity. An important paralog of this gene is PLLP.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CMTM8 Gene

Genomics for CMTM8 Gene

Regulatory Elements for CMTM8 Gene

Enhancers for CMTM8 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G032177 1.2 Ensembl ENCODE 11.6 -61.0 -60974 1.2 PKNOX1 MLX WRNIP1 ARID4B YY1 GATA2 ZNF143 ZNF263 REST KAT8 RPSAP11 CMTM8 KRT18P15 RPL31P18 CMTM6 OSBPL10 ENSG00000236732
GH03G032302 1.2 Ensembl ENCODE dbSUPER 11.4 +64.8 64773 2.8 SOX13 GATAD2A FOXA2 FOXA3 HMG20A HHEX FOXA1 TBX3 CTBP1 GATA3 CMTM8 KRT18P15 GC03P032261 CMTM7
GH03G032215 1 ENCODE 12.7 -22.3 -22275 1.0 FOXA2 ATF1 MLX ARID4B DMAP1 ZNF48 YY1 TCF12 SLC30A9 FOS CMTM8 KRT18P15 ENSG00000261572 GC03P032191
GH03G032295 1.6 FANTOM5 Ensembl ENCODE dbSUPER 5.1 +58.3 58346 2.7 FOXA2 RB1 RAD21 ZNF143 CREM MIXL1 THAP11 ZNF654 HMG20B REST CMTM8 GC03P032261 CMTM7
GH03G032288 0.5 ENCODE dbSUPER 16.2 +50.5 50475 1.4 CMTM8 KRT18P15 GC03P032261 CMTM7
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CMTM8 on UCSC Golden Path with GeneCards custom track

Promoters for CMTM8 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000150498 121 1601 FOXA2 PKNOX1 ARID4B SIN3A DMAP1 ZNF48 YY1 GLIS2 SP3 MXD4

Genomic Location for CMTM8 Gene

Chromosome:
3
Start:
32,238,679 bp from pter
End:
32,370,325 bp from pter
Size:
131,647 bases
Orientation:
Plus strand

Genomic View for CMTM8 Gene

Genes around CMTM8 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CMTM8 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CMTM8 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CMTM8 Gene

Proteins for CMTM8 Gene

  • Protein details for CMTM8 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IZV2-CKLF8_HUMAN
    Recommended name:
    CKLF-like MARVEL transmembrane domain-containing protein 8
    Protein Accession:
    Q8IZV2
    Secondary Accessions:
    • A5D6I7
    • Q8IW01

    Protein attributes for CMTM8 Gene

    Size:
    173 amino acids
    Molecular mass:
    19572 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for CMTM8 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CMTM8 Gene

Post-translational modifications for CMTM8 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CMTM8 Gene

No data available for DME Specific Peptides for CMTM8 Gene

Domains & Families for CMTM8 Gene

Gene Families for CMTM8 Gene

Protein Domains for CMTM8 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for CMTM8 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8IZV2

UniProtKB/Swiss-Prot:

CKLF8_HUMAN :
  • Belongs to the chemokine-like factor family.
Family:
  • Belongs to the chemokine-like factor family.
genes like me logo Genes that share domains with CMTM8: view

Function for CMTM8 Gene

Gene Ontology (GO) - Molecular Function for CMTM8 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005125 cytokine activity IEA --
GO:0019911 structural constituent of myelin sheath IBA --
genes like me logo Genes that share ontologies with CMTM8: view

Phenotypes for CMTM8 Gene

genes like me logo Genes that share phenotypes with CMTM8: view

Animal Model Products

CRISPR Products

miRNA for CMTM8 Gene

miRTarBase miRNAs that target CMTM8

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CMTM8 Gene

Localization for CMTM8 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CMTM8 Gene

Isoform 1: Membrane; Multi-pass membrane protein.
Isoform 2: Cytoplasm. Nucleus.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CMTM8 gene
Compartment Confidence
nucleus 5
plasma membrane 3
extracellular 3

Gene Ontology (GO) - Cellular Components for CMTM8 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space IEA --
GO:0005634 nucleus IEA --
GO:0005654 nucleoplasm IDA --
GO:0005737 cytoplasm IEA --
GO:0016020 membrane IEA --
genes like me logo Genes that share ontologies with CMTM8: view

Pathways & Interactions for CMTM8 Gene

SuperPathways for CMTM8 Gene

No Data Available

Interacting Proteins for CMTM8 Gene

Gene Ontology (GO) - Biological Process for CMTM8 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001766 membrane raft polarization IBA --
GO:0006935 chemotaxis IEA --
GO:0008104 protein localization IBA --
GO:0042552 myelination IBA --
genes like me logo Genes that share ontologies with CMTM8: view

No data available for Pathways by source and SIGNOR curated interactions for CMTM8 Gene

Drugs & Compounds for CMTM8 Gene

No Compound Related Data Available

Transcripts for CMTM8 Gene

Unigene Clusters for CMTM8 Gene

CKLF-like MARVEL transmembrane domain containing 8:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CMTM8 Gene

No ASD Table

Relevant External Links for CMTM8 Gene

GeneLoc Exon Structure for
CMTM8
ECgene alternative splicing isoforms for
CMTM8

Expression for CMTM8 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CMTM8 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for CMTM8 Gene

This gene is overexpressed in Liver (x5.6) and Pancreas (x5.3).

Protein differential expression in normal tissues from HIPED for CMTM8 Gene

This gene is overexpressed in Spleen (51.4) and Islet of Langerhans (17.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for CMTM8 Gene



Protein tissue co-expression partners for CMTM8 Gene

NURSA nuclear receptor signaling pathways regulating expression of CMTM8 Gene:

CMTM8

SOURCE GeneReport for Unigene cluster for CMTM8 Gene:

Hs.154986

mRNA Expression by UniProt/SwissProt for CMTM8 Gene:

Q8IZV2-CKLF8_HUMAN
Tissue specificity: Highly expressed in liver and pancreas.

Evidence on tissue expression from TISSUES for CMTM8 Gene

  • Liver(4.2)
  • Blood(4)
  • Nervous system(4)
genes like me logo Genes that share expression patterns with CMTM8: view

Primer Products

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for CMTM8 Gene

Orthologs for CMTM8 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CMTM8 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CMTM8 34 35
  • 99.81 (n)
dog
(Canis familiaris)
Mammalia CMTM8 34 35
  • 94.03 (n)
cow
(Bos Taurus)
Mammalia CMTM8 34 35
  • 91.91 (n)
rat
(Rattus norvegicus)
Mammalia Cmtm8 34
  • 87.28 (n)
mouse
(Mus musculus)
Mammalia Cmtm8 34 16 35
  • 86.71 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia CMTM8 35
  • 77 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CMTM8 35
  • 46 (a)
OneToOne
chicken
(Gallus gallus)
Aves CMTM8 34 35
  • 79 (n)
lizard
(Anolis carolinensis)
Reptilia CMTM8 35
  • 72 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia cmtm8 34
  • 67.26 (n)
Str.18775 34
zebrafish
(Danio rerio)
Actinopterygii zgc:158657 34
  • 61.01 (n)
CMTM8 35
  • 47 (a)
OneToOne
Species where no ortholog for CMTM8 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CMTM8 Gene

ENSEMBL:
Gene Tree for CMTM8 (if available)
TreeFam:
Gene Tree for CMTM8 (if available)

Paralogs for CMTM8 Gene

Paralogs for CMTM8 Gene

(3) SIMAP similar genes for CMTM8 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with CMTM8: view

Variants for CMTM8 Gene

Sequence variations from dbSNP and Humsavar for CMTM8 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000017882 -- 32,293,985(+) ATCAA(A/G)GGTAA intron-variant
rs1000026099 -- 32,352,631(+) ATGAA(A/G)ATCAA intron-variant
rs1000069770 -- 32,312,242(+) GTCTC(A/G)TTTCA intron-variant
rs1000099266 -- 32,325,391(+) TAAAA(A/G)GCCAT intron-variant
rs1000102847 -- 32,365,635(+) AGATG(C/G)GATTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CMTM8 Gene

Variant ID Type Subtype PubMed ID
esv23045 CNV loss 19812545
esv2511457 CNV deletion 19546169
esv2676585 CNV deletion 23128226
esv3307004 CNV mobile element insertion 20981092
esv3365412 CNV insertion 20981092
esv3385139 CNV insertion 20981092
esv3561699 CNV deletion 23714750
esv3595770 CNV loss 21293372
nsv1003285 CNV gain 25217958
nsv1011573 CNV gain 25217958
nsv1131691 CNV deletion 24896259
nsv236546 CNV deletion 16902084
nsv474894 CNV novel sequence insertion 20440878
nsv526741 CNV loss 19592680
nsv590046 CNV loss 21841781
nsv979815 CNV duplication 23825009

Variation tolerance for CMTM8 Gene

Residual Variation Intolerance Score: 64.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.00; 36.95% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CMTM8 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CMTM8

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CMTM8 Gene

Disorders for CMTM8 Gene

Relevant External Links for CMTM8

Genetic Association Database (GAD)
CMTM8
Human Genome Epidemiology (HuGE) Navigator
CMTM8
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CMTM8

No disorders were found for CMTM8 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CMTM8 Gene

Publications for CMTM8 Gene

  1. An alternative splice form of CMTM8 induces apoptosis. (PMID: 17681841) Li D. … Wang Y. (Int. J. Biochem. Cell Biol. 2007) 3 4 22 64
  2. Identification of eight genes encoding chemokine-like factor superfamily members 1-8 (CKLFSF1-8) by in silico cloning and experimental validation. (PMID: 12782130) Han W. … Ma D. (Genomics 2003) 3 4 22 64
  3. Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder. (PMID: 21254220) Jiang Y. … Zhang H. (Genet. Epidemiol. 2011) 3 46 64
  4. Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure. (PMID: 22174851) Lingappa J.R. … Goldstein D. (PLoS ONE 2011) 3 46 64
  5. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 46 64

Products for CMTM8 Gene

Sources for CMTM8 Gene

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