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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

CMTM7 Gene

protein-coding   GIFtS: 45
GCID: GC03P032409

CKLF-like MARVEL transmembrane domain containing 7

(Previous names: chemokine-like factor super family 7, chemokine-like factor...)
(Previous symbol: CKLFSF7)
  Search for CMTM7
in
MalaCards
our new
 Human Malady Compendium 
Biological research products
for CMTM7    

Aliases
for CMTM7 gene

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section
Aliases
CKLF-Like MARVEL Transmembrane Domain Containing 71 2     Chemokine-Like Factor Superfamily Member 72 3
CKLFSF71 2 3     FLJ309921
Chemokine-Like Factor Super Family 71 2     Chemokine-Like Factor Super Family Member 7 Variant 22
Chemokine-Like Factor Superfamily 71 2     CKLF-Like MARVEL Transmembrane Domain-Containing Protein 72

External Ids:    HGNC: 191781   Entrez Gene: 1126162   Ensembl: ENSG000001535517   OMIM: 6078905   UniProtKB: Q96FZ53   

Export aliases for CMTM7 gene to outside databases


Summaries
for CMTM7 gene

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section
Entrez Gene summary for CMTM7:
This gene belongs to the chemokine-like factor gene superfamily, a novel family that is similar to the chemokine and
transmembrane 4 superfamilies. This gene is one of several chemokine-like factor genes located in a cluster on
chromosome 3. The protein encoded by this gene is highly expressed in leukocytes, but its exact function is unknown.
Alternatively spliced transcript variants encoding different isoforms have been identified. (provided by RefSeq, Jul
2008)




Genomic Views
for CMTM7 gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000003.11  NC_018914.1  NT_022517.18  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the CMTM7 gene promoter:
         HEN1   AREB6   POU2F1   POU2F1a   AP-4   Pax-4a   c-Ets-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: CMTM7 promoter sequence
   Search SABiosciences Chromatin IP Primers for CMTM7

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CMTM7


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 3p22.3   Ensembl cytogenetic band:  3p22.3   HGNC cytogenetic band: 3p22.2

CMTM7 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CMTM7 gene location

GeneLoc information about chromosome 3         GeneLoc Exon Structure

GeneLoc location for GC03P032409:  view genomic region     (about GC identifiers)

Start:
 32,433,163 bp from pter      End:
 32,524,559 bp from pter
Size:
 91,397 bases      Orientation:
 plus strand

Proteins
for CMTM7 gene

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section
UniProtKB/Swiss-Prot: CKLF7_HUMAN, Q96FZ5 (See protein sequence)
Recommended Name: CKLF-like MARVEL transmembrane domain-containing protein 7  
Size: 175 amino acids; 18834 Da
Subcellular location: Membrane; Multi-pass membrane protein
Secondary accessions: Q5VLK1
Alternative splicing: 2 isoforms:  Q96FZ5-1   Q96FZ5-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for CMTM7: NX_Q96FZ5

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q96FZ5

    • CMTM7 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (2 alternative transcripts): 
    NP_612419.1  NP_852137.1  

    ENSEMBL proteins: 
     ENSP00000335605   ENSP00000283621   ENSP00000414480   ENSP00000440333   ENSP00000445027  

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    Uscn Proteins for CMTM7

    Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005615extracellular space IEA--
    GO:0016021integral to membrane IEA--


    CMTM7 for ontologies           About GeneDecksing



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    Protein Domains /
    Families
    for CMTM7 gene

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    CMTM7 for domains           About GeneDecksing

    2 InterPro domains/families:
     IPR021128 MARVEL-like_dom
     IPR008253 Marvel

    Graphical View of Domain Structure for InterPro Entry Q96FZ5

    ProtoNet protein and cluster: Q96FZ5

    1 Blocks protein family: IPB008253 Marvel

    UniProtKB/Swiss-Prot: CKLF7_HUMAN, Q96FZ5
    Similarity: Belongs to the chemokine-like factor family
    Similarity: Contains 1 MARVEL domain


    Function
    for CMTM7 gene

    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section
    miRNA
    Products:            		 OriGene 3'-UTR Clone (see all 2): CMTM7
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat CMTM7
    6 QIAGEN miScript miRNA Assays for microRNAs that regulate CMTM7:
    hsa-miR-544b hsa-miR-182 hsa-miR-16-2* hsa-miR-195* hsa-miR-1271 hsa-miR-96
    SwitchGear 3'UTR luciferase reporter plasmid: CMTM7 3' UTR sequence
    Inhib. RNA
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    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for CMTM7 (see all 7)
    OriGene shRNA RFP: CMTM7
    OriGene siRNA: CMTM7
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CMTM7

    Gene Editing
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    Clone
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    In Situ Assay
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    Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005125cytokine activity IEA--


    CMTM7 for ontologies           About GeneDecksing


    1 GenomeRNAi human phenotype for CMTM7:
     Decreased circadian period len 


    Pathways & Interactions
    for CMTM7 gene

    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CMTM7

    Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006935chemotaxis IEA--


    CMTM7 for ontologies           About GeneDecksing



    Drugs & Compounds
    for CMTM7 gene

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for CMTM7
    Search CenterWatch for drugs/clinical trials and news about CMTM7 / CKLF7 

    Transcripts
    for CMTM7 gene

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section
    REFSEQ mRNAs for CMTM7 gene (2 alternative transcripts): 
    NM_138410.2  NM_181472.1  

    Unigene Cluster for CMTM7:

    CKLF-like MARVEL transmembrane domain containing 7
    Hs.440494  [show with all ESTs]
    Unigene Representative Sequence: AK308878
    6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000334983(uc003cey.1 uc003cez.1) ENST00000349718 ENST00000454304
    ENST00000465248 ENST00000487007 ENST00000464689

    miRNA
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    6 QIAGEN miScript miRNA Assays for microRNAs that regulate CMTM7:
    hsa-miR-544b hsa-miR-182 hsa-miR-16-2* hsa-miR-195* hsa-miR-1271 hsa-miR-96
    SwitchGear 3'UTR luciferase reporter plasmid: CMTM7 3' UTR sequence
    Inhib. RNA
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    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for CMTM7 (see all 7)
    OriGene shRNA RFP: CMTM7
    OriGene siRNA: CMTM7
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CMTM7
    Clone
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CMTM7
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    Additional cDNA sequence: 

    AF479263.2 AK308878.1 AY174113.1 BC010116.2 DQ132881.1 

    14 DOTS entries:

    DT.80101456  DT.100794687  DT.113567  DT.101972499  DT.91752198  DT.120884865  DT.100794690  DT.120884891 
    DT.100789839  DT.95168235  DT.95258420  DT.100711974  DT.120884841  DT.439648 

    24/123 AceView cDNA sequences (see all 123):

    AA304308 BE905434 BU155257 CR599506 AF479263 CD674269 BE740519 BE622335 
    AA480075 AW591933 CD674360 BC010116 NM_181472 CR604270 CD723512 AA427707 
    BM823878 AA554328 BM764608 BU731484 CR590292 CR594621 BM708780 CB240795 

    GeneLoc Exon Structure

    5 Alternative Splicing Database (ASD) splice patterns (SP) for CMTM7    About this scheme

    ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6a · 6b · 6c
    SP1:                                -     -                           
    SP2:                                -                                 
    SP3:                          -     -     -                           
    SP4:                          -     -     -     -                     
    SP5:                                                                  


    ECgene alternative splicing isoforms for CMTM7

    Expression
    for CMTM7 gene

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    CMTM7 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: --

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)
    About this image

    CMTM7 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    2 LifeMap In Vivo Development Anatomical Compartments/Cells 
    Tissue Anatomical Compartment CellCategory (developmental path)
    EyeInner Nuclear LayerCholinergic Amacrine CellsAmacrine, Retina
    KidneyRenal VesicleKidney
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization
    Stem Cell Differentiation: 1 LifeMap Cell 
    NameCategory
    CyT49 (Embryonic Stem Cell)Early Embryo, Inner Cell Mass

    See CMTM7 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for CMTM7

    SOURCE GeneReport for Unigene cluster: Hs.440494

    UniProtKB/Swiss-Prot: CKLF7_HUMAN, Q96FZ5
    Tissue specificity: Highly expressed in leukocytes

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    In Situ
    Assay Products:     
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    Orthologs
    for CMTM7 gene

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section
    This gene was present in the common ancestor of chordates.

    Orthologs for CMTM7 gene from 4/13 species (see all 13)    About this table
    Organism Taxonomic
    classification    		 Gene Description Human
    Similarity    		 Orthology
    Type    		 Details
    mouse
    (Mus musculus)    		 Mammalia Cmtm71 , 5 CKLF-like MARVEL transmembrane domain containing 71, 5 84.94(n)1
    83.73(a)1    		   9 (65.13 cM)5
    1025451  NM_133978.21  NP_598739.11 
     1147568375 
    chicken
    (Gallus gallus)    		 Aves CMTM71 CKLF-like MARVEL transmembrane domain containing 7 66.48(n)
    63.79(a)    		   420666  NM_001007894.1  NP_001007895.1 
    African clawed frog
    (Xenopus laevis)    		 Amphibia BC056111.12   -- 69.91(n)    BC056111.1 
    zebrafish
    (Danio rerio)    		 Actinopterygii cmtm71 CKLF-like MARVEL transmembrane domain containing 7 55.9(n)
    54.04(a)    		   559138  NM_001130114.1  NP_001123586.1 


    ENSEMBL Gene Tree for CMTM7 (if available)
    TreeFam Gene Tree for CMTM7 (if available) 

    Paralogs
    for CMTM7 gene

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for CMTM7 gene
    1 SIMAP similar gene for CMTM7 using alignment to 4 protein entries:     CKLF7_HUMAN (see all proteins):
    CKLFSF7

    CMTM7 for paralogs           About GeneDecksing


    1 Pseudogenes.org Pseudogene for CMTM7
    PGOHUM00000260377


    Genomic Variants
    for CMTM7 gene

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/1164 NCBI SNPs in CMTM7 are shown (see all 1164)     About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance    		Chr 3 posSequence#AA
    Chg    		TypeMore#Allele
    freq    		PopTotal
    sample    		More
    ----------
    rs98394251,2
    		C,F,A,H,--32431201(+) GTTTCA/GCTTTG 2 -- us2k1 tfbs36Minor allele frequency- G:0.17NA WA CSA EA 366
    rs1913301461,2
    		--32431262(+) ACAGTA/GTTGTA 2 -- us2k10--------
    rs1824245951,2
    		--32431396(+) GATGGA/GGTTTC 2 -- us2k10--------
    rs124977191,2
    		C,F,H,--32431420(+) TGCTGG/TTGTCA 2 -- us2k18Minor allele frequency- T:0.06NS EA NA WA 736
    rs1436637861,2
    		C,--32431615(+) TTTCC-/TTTTCT
                TTTTC     		2 -- us2k10--------
    rs784850771,2
    		--32431620(+) TTTTCC/TTTTTC 2 -- us2k10--------
    rs1874241991,2
    		--32431678(+) AGTGCA/GGTGGC 2 -- us2k10--------
    rs780115591,2
    		C,F,--32431814(+) AAAAGG/AGATAC 2 -- us2k13Minor allele frequency- A:0.04WA NA EA 358
    rs716305201,2
    		C--32431872(+) TTTTTT/-AATTG 2 -- us2k11Minor allele frequency- -:0.50NA 2
    rs786821451,2
    		F,--32431986(+) TCCAGA/CCTCAG 2 -- us2k13Minor allele frequency- C:0.11WA NA EA 358

    HapMap Linkage Disequilibrium report for CMTM7 (32433163 - 32524559 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for CMTM7: --

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing CMTM7
    DNA2.0 Custom Variant and Variant Library Synthesis for CMTM7

    Disorders / Diseases
    for CMTM7 gene

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    CMTM7 for disorders           About MalaCards

    CMTM7 for disorders           About GeneDecksing

    OMIM gene information: 607890    OMIM disorders: --

    Human Genome Epidemiology (HuGE) Navigator: CMTM7 (2 documents)

    Export disorders for CMTM7 gene to outside databases

    Publications
    for CMTM7 gene

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for CMTM7 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with CMTM7)    		    Utopia: connect your pdf to the dynamic
    world of online information

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    2. Identification of eight genes encoding chemokine-like factor superfamily members 1-8 (CKLFSF1-8) by in silico cloning and experimental validation. (PubMed id 12782130)1, 2 Han W.... Ma D. (2003)
    3. Identification of CMTM7 as a transmembrane linker of B LNK and the B-cell receptor. (PubMed id 22363743)1 Miyazaki A....Kitamura D. (2012)
    4. Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (2011)
    5. Genomic variation associated with mortality among adu lts of European and African ancestry with heart failure: the cohorts for heart and aging research in genomic epidemiology consortium. (PubMed id 20400778)1 Morrison A.C....Smith N.L. (2010)
    6. The DNA sequence, annotation and analysis of human chromosome 3. (PubMed id 16641997)2 Muzny D.M....Gibbs R.A. (2006)
    7. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1 Ota T.... Sugano S. (2004)
    8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

    External Searches for CMTM7 gene

    (in PubMed, OMIM, and NCBI Bookshelf)
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    Genome Databases showing CMTM7 gene

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 112616 HGNC: 19178 AceView: CKLFSF7 Ensembl:ENSG00000153551 euGenes: HUgn112616
    ECgene: CMTM7 H-InvDB: CMTM7

    Other Databases showing CMTM7 gene

    (According to HUGE)
    About This Section
    		   --

    Specialized Databases showing CMTM7 gene

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for CMTM7 Pharmacogenomics, SNPs, Pathways

    Intellectual Property
    for CMTM7 gene

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    		Patent Information for CMTM7 gene:
    Search GeneIP for patents involving CMTM7

    GeneCards and IP:
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