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Aliases for CMTM7 Gene

Aliases for CMTM7 Gene

  • CKLF Like MARVEL Transmembrane Domain Containing 7 2 3
  • CKLF-Like MARVEL Transmembrane Domain Containing 7 2 3 5
  • Chemokine-Like Factor Superfamily Member 7 3 4
  • Chemokine-Like Factor Super Family 7 2 3
  • Chemokine-Like Factor Superfamily 7 2 3
  • CKLFSF7 3 4
  • Chemokine-Like Factor Super Family Member 7 Variant 2 3

External Ids for CMTM7 Gene

Previous HGNC Symbols for CMTM7 Gene

  • CKLFSF7

Summaries for CMTM7 Gene

Entrez Gene Summary for CMTM7 Gene

  • This gene belongs to the chemokine-like factor gene superfamily, a novel family that is similar to the chemokine and transmembrane 4 superfamilies. This gene is one of several chemokine-like factor genes located in a cluster on chromosome 3. This gene acts as a tumor suppressor that regulates G1/S transition in the cell cycle, and epidermal growth factor receptor/protein kinase B signaling during tumor pathogenesis. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Feb 2016]

GeneCards Summary for CMTM7 Gene

CMTM7 (CKLF Like MARVEL Transmembrane Domain Containing 7) is a Protein Coding gene. GO annotations related to this gene include cytokine activity.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CMTM7 Gene

Genomics for CMTM7 Gene

Regulatory Elements for CMTM7 Gene

Promoters for CMTM7 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around CMTM7 on UCSC Golden Path with GeneCards custom track

Genomic Location for CMTM7 Gene

Chromosome:
3
Start:
32,391,671 bp from pter
End:
32,483,067 bp from pter
Size:
91,397 bases
Orientation:
Plus strand

Genomic View for CMTM7 Gene

Genes around CMTM7 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CMTM7 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CMTM7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CMTM7 Gene

Proteins for CMTM7 Gene

  • Protein details for CMTM7 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96FZ5-CKLF7_HUMAN
    Recommended name:
    CKLF-like MARVEL transmembrane domain-containing protein 7
    Protein Accession:
    Q96FZ5
    Secondary Accessions:
    • Q5VLK1

    Protein attributes for CMTM7 Gene

    Size:
    175 amino acids
    Molecular mass:
    18834 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for CMTM7 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CMTM7 Gene

Proteomics data for CMTM7 Gene at MOPED

Post-translational modifications for CMTM7 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CMTM7 Gene

Antibody Products

No data available for DME Specific Peptides for CMTM7 Gene

Domains & Families for CMTM7 Gene

Gene Families for CMTM7 Gene

Protein Domains for CMTM7 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for CMTM7 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96FZ5

UniProtKB/Swiss-Prot:

CKLF7_HUMAN :
  • Contains 1 MARVEL domain.
  • Belongs to the chemokine-like factor family.
Domain:
  • Contains 1 MARVEL domain.
Family:
  • Belongs to the chemokine-like factor family.
genes like me logo Genes that share domains with CMTM7: view

Function for CMTM7 Gene

genes like me logo Genes that share phenotypes with CMTM7: view

Animal Model Products

  • Taconic Biosciences Mouse Models for CMTM7

miRNA for CMTM7 Gene

miRTarBase miRNAs that target CMTM7

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CMTM7 Gene

Localization for CMTM7 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CMTM7 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CMTM7 Gene COMPARTMENTS Subcellular localization image for CMTM7 gene
Compartment Confidence
extracellular 3
plasma membrane 3

Gene Ontology (GO) - Cellular Components for CMTM7 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane IEA,IDA 19946888
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with CMTM7: view

Pathways & Interactions for CMTM7 Gene

SuperPathways for CMTM7 Gene

No Data Available

Interacting Proteins for CMTM7 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000335605%0d%0a9606.ENSP00000344818%0d%0a9606.ENSP00000224337%0d%0a
Selected Interacting proteins: ENSP00000335605 for CMTM7 Gene via STRING

Gene Ontology (GO) - Biological Process for CMTM7 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006935 chemotaxis IEA --
genes like me logo Genes that share ontologies with CMTM7: view

No data available for Pathways by source and SIGNOR curated interactions for CMTM7 Gene

Drugs & Compounds for CMTM7 Gene

No Compound Related Data Available

Transcripts for CMTM7 Gene

Unigene Clusters for CMTM7 Gene

CKLF-like MARVEL transmembrane domain containing 7:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CMTM7 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6a · 6b · 6c
SP1: - -
SP2: -
SP3: - - -
SP4: - - - -
SP5:

Relevant External Links for CMTM7 Gene

GeneLoc Exon Structure for
CMTM7
ECgene alternative splicing isoforms for
CMTM7

Expression for CMTM7 Gene

mRNA expression in normal human tissues for CMTM7 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for CMTM7 Gene

This gene is overexpressed in Whole Blood (x10.8).

Protein differential expression in normal tissues from HIPED for CMTM7 Gene

This gene is overexpressed in Plasma (50.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for CMTM7 Gene



SOURCE GeneReport for Unigene cluster for CMTM7 Gene Hs.440494

mRNA Expression by UniProt/SwissProt for CMTM7 Gene

Q96FZ5-CKLF7_HUMAN
Tissue specificity: Highly expressed in leukocytes.
genes like me logo Genes that share expression patterns with CMTM7: view

Primer Products

In Situ Assay Products

No data available for Protein tissue co-expression partners for CMTM7 Gene

Orthologs for CMTM7 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CMTM7 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia CMTM7 35
  • 87.55 (n)
  • 84.48 (a)
CMTM7 36
  • 83 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CMTM7 35
  • 86.85 (n)
  • 82.99 (a)
CMTM7 36
  • 83 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Cmtm7 35
  • 85.14 (n)
  • 84.94 (a)
Cmtm7 16
Cmtm7 36
  • 83 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia CMTM7 35
  • 99.62 (n)
  • 100 (a)
CMTM7 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Cmtm7 35
  • 84.47 (n)
  • 82.61 (a)
oppossum
(Monodelphis domestica)
Mammalia CMTM7 36
  • 68 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CMTM7 36
  • 76 (a)
OneToOne
chicken
(Gallus gallus)
Aves CMTM7 35
  • 66.48 (n)
  • 63.79 (a)
CMTM7 36
  • 61 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia cmtm7 35
  • 63.84 (n)
  • 58.79 (a)
zebrafish
(Danio rerio)
Actinopterygii cmtm7 35
  • 56.38 (n)
  • 54.36 (a)
cmtm7 36
  • 52 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea CSA.146 36
  • 34 (a)
OneToOne
Species with no ortholog for CMTM7:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CMTM7 Gene

ENSEMBL:
Gene Tree for CMTM7 (if available)
TreeFam:
Gene Tree for CMTM7 (if available)

Paralogs for CMTM7 Gene

(1) SIMAP similar genes for CMTM7 Gene using alignment to 4 proteins:

Pseudogenes.org Pseudogenes for CMTM7 Gene

genes like me logo Genes that share paralogs with CMTM7: view

No data available for Paralogs for CMTM7 Gene

Variants for CMTM7 Gene

Sequence variations from dbSNP and Humsavar for CMTM7 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs10165 -- 32,454,603(-) TAGAA(C/G)GGATT utr-variant-3-prime
rs164035 -- 32,437,760(-) GTATG(A/C)GCCAC intron-variant
rs164212 -- 32,447,652(-) gaatc(C/T)gtaag intron-variant
rs164218 -- 32,453,362(-) ATTTT(C/G)AGAGA intron-variant
rs164222 -- 32,443,418(-) aataa(A/T)atttg intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CMTM7 Gene

Variant ID Type Subtype PubMed ID
nsv834652 CNV Loss 17160897
nsv518025 CNV Gain 19592680
nsv522856 CNV Gain 19592680

Variation tolerance for CMTM7 Gene

Residual Variation Intolerance Score: 52.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.49; 10.71% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CMTM7 Gene

HapMap Linkage Disequilibrium report
CMTM7

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CMTM7 Gene

Disorders for CMTM7 Gene

Relevant External Links for CMTM7

Genetic Association Database (GAD)
CMTM7
Human Genome Epidemiology (HuGE) Navigator
CMTM7
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CMTM7

No disorders were found for CMTM7 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CMTM7 Gene

Publications for CMTM7 Gene

  1. Genomic variation associated with mortality among adults of European and African ancestry with heart failure: the cohorts for heart and aging research in genomic epidemiology consortium. (PMID: 20400778) Morrison A.C. … Smith N.L. (Circ Cardiovasc Genet 2010) 3 48 67
  2. A novel 3p22.3 gene CMTM7 represses oncogenic EGFR signaling and inhibits cancer cell growth. (PMID: 23893243) Li H. … Han W. (Oncogene 2014) 3
  3. Change of CMTM7 expression, a potential tumor suppressor, is associated with poor clinical outcome in human non-small cell lung cancer. (PMID: 23981602) Liu Q. … Wang J. (Chin. Med. J. 2013) 3
  4. Identification of CMTM7 as a transmembrane linker of BLNK and the B-cell receptor. (PMID: 22363743) Miyazaki A. … Kitamura D. (PLoS ONE 2012) 3
  5. Defining the membrane proteome of NK cells. (PMID: 19946888) Ghosh D. … Wilkins J.A. (J Mass Spectrom 2010) 3

Products for CMTM7 Gene

Sources for CMTM7 Gene

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