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Aliases for CMTM6 Gene

Aliases for CMTM6 Gene

  • CKLF Like MARVEL Transmembrane Domain Containing 6 2 3
  • CKLF-Like MARVEL Transmembrane Domain Containing 6 2 3 5
  • Chemokine-Like Factor Superfamily Member 6 3 4
  • Chemokine-Like Factor Super Family 6 2 3
  • Chemokine-Like Factor Superfamily 6 2 3
  • CKLFSF6 3 4
  • PRO2219 3

External Ids for CMTM6 Gene

Previous HGNC Symbols for CMTM6 Gene

  • CKLFSF6

Summaries for CMTM6 Gene

Entrez Gene Summary for CMTM6 Gene

  • This gene belongs to the chemokine-like factor gene superfamily, a novel family that is similar to the chemokine and transmembrane 4 superfamilies. This gene is one of several chemokine-like factor genes located in a cluster on chromosome 3. This gene is widely expressed in many tissues, but the exact function of the encoded protein is unknown. [provided by RefSeq, Jul 2008]

GeneCards Summary for CMTM6 Gene

CMTM6 (CKLF Like MARVEL Transmembrane Domain Containing 6) is a Protein Coding gene. GO annotations related to this gene include cytokine activity. An important paralog of this gene is CMTM4.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CMTM6 Gene

Genomics for CMTM6 Gene

Regulatory Elements for CMTM6 Gene

Promoters for CMTM6 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around CMTM6 on UCSC Golden Path with GeneCards custom track

Genomic Location for CMTM6 Gene

Chromosome:
3
Start:
32,481,312 bp from pter
End:
32,503,408 bp from pter
Size:
22,097 bases
Orientation:
Minus strand

Genomic View for CMTM6 Gene

Genes around CMTM6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CMTM6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CMTM6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CMTM6 Gene

Proteins for CMTM6 Gene

  • Protein details for CMTM6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NX76-CKLF6_HUMAN
    Recommended name:
    CKLF-like MARVEL transmembrane domain-containing protein 6
    Protein Accession:
    Q9NX76
    Secondary Accessions:
    • Q6IAC4

    Protein attributes for CMTM6 Gene

    Size:
    183 amino acids
    Molecular mass:
    20419 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CMTM6 Gene

Proteomics data for CMTM6 Gene at MOPED

Post-translational modifications for CMTM6 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CMTM6 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

No data available for DME Specific Peptides for CMTM6 Gene

Domains & Families for CMTM6 Gene

Gene Families for CMTM6 Gene

Protein Domains for CMTM6 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for CMTM6 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9NX76

UniProtKB/Swiss-Prot:

CKLF6_HUMAN :
  • Contains 1 MARVEL domain.
  • Belongs to the chemokine-like factor family.
Domain:
  • Contains 1 MARVEL domain.
Family:
  • Belongs to the chemokine-like factor family.
genes like me logo Genes that share domains with CMTM6: view

Function for CMTM6 Gene

genes like me logo Genes that share phenotypes with CMTM6: view

Animal Model Products

Inhibitory RNA Products

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CMTM6 Gene

Localization for CMTM6 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CMTM6 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CMTM6 Gene COMPARTMENTS Subcellular localization image for CMTM6 gene
Compartment Confidence
extracellular 5
plasma membrane 3
cytoskeleton 2
cytosol 2

Gene Ontology (GO) - Cellular Components for CMTM6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane IEA,IDA 19946888
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with CMTM6: view

Pathways & Interactions for CMTM6 Gene

SuperPathways for CMTM6 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CMTM6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CMTM6 Gene

Drugs & Compounds for CMTM6 Gene

No Compound Related Data Available

Transcripts for CMTM6 Gene

mRNA/cDNA for CMTM6 Gene

Unigene Clusters for CMTM6 Gene

CKLF-like MARVEL transmembrane domain containing 6:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CMTM6 Gene

No ASD Table

Relevant External Links for CMTM6 Gene

GeneLoc Exon Structure for
CMTM6
ECgene alternative splicing isoforms for
CMTM6

Expression for CMTM6 Gene

mRNA expression in normal human tissues for CMTM6 Gene

mRNA differential expression in normal tissues according to GTEx for CMTM6 Gene

This gene is overexpressed in Whole Blood (x5.9).

Protein differential expression in normal tissues from HIPED for CMTM6 Gene

This gene is overexpressed in Monocytes (26.7), Bone (9.2), and Peripheral blood mononuclear cells (9.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for CMTM6 Gene



SOURCE GeneReport for Unigene cluster for CMTM6 Gene Hs.380627

mRNA Expression by UniProt/SwissProt for CMTM6 Gene

Q9NX76-CKLF6_HUMAN
Tissue specificity: Expressed in the leukocytes, placenta and testis.
genes like me logo Genes that share expression patterns with CMTM6: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and Protein tissue co-expression partners for CMTM6 Gene

Orthologs for CMTM6 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CMTM6 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia CMTM6 35
  • 75.46 (n)
  • 70.88 (a)
CMTM6 36
  • 71 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CMTM6 35
  • 81.14 (n)
  • 79.12 (a)
CMTM6 36
  • 79 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Cmtm6 35
  • 77.96 (n)
  • 83.06 (a)
Cmtm6 16
Cmtm6 36
  • 83 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia CMTM6 35
  • 99.64 (n)
  • 98.91 (a)
CMTM6 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Cmtm6 35
  • 79.42 (n)
  • 84.15 (a)
oppossum
(Monodelphis domestica)
Mammalia CMTM6 36
  • 54 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CMTM6 36
  • 73 (a)
OneToOne
chicken
(Gallus gallus)
Aves CMTM6 35
  • 56.93 (n)
  • 47.75 (a)
CMTM6 36
  • 39 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CMTM6 36
  • 77 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia cmtm6 35
  • 49.52 (n)
  • 41.71 (a)
zebrafish
(Danio rerio)
Actinopterygii cmtm6 35
  • 46.29 (n)
  • 38.86 (a)
cmtm6 36
  • 34 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea CSA.2454 36
  • 13 (a)
OneToMany
Species with no ortholog for CMTM6:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CMTM6 Gene

ENSEMBL:
Gene Tree for CMTM6 (if available)
TreeFam:
Gene Tree for CMTM6 (if available)

Paralogs for CMTM6 Gene

Paralogs for CMTM6 Gene

(1) SIMAP similar genes for CMTM6 Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for CMTM6 Gene

genes like me logo Genes that share paralogs with CMTM6: view

Variants for CMTM6 Gene

Sequence variations from dbSNP and Humsavar for CMTM6 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs35574803 - 32,491,754(+) TGGAG(C/T)GCAAT reference, missense
rs4796 -- 32,482,285(-) GGCCC(A/G)ACATA utr-variant-3-prime
rs164207 -- 32,504,199(-) GAAGG(G/T)TAGTT upstream-variant-2KB
rs164208 -- 32,503,449(-) ctttc(A/G)tgaaa upstream-variant-2KB
rs164209 -- 32,503,270(-) ctcct(C/T)catct upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CMTM6 Gene

Variant ID Type Subtype PubMed ID
nsv834652 CNV Loss 17160897

Variation tolerance for CMTM6 Gene

Residual Variation Intolerance Score: 60.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.54; 29.91% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CMTM6 Gene

HapMap Linkage Disequilibrium report
CMTM6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CMTM6 Gene

Disorders for CMTM6 Gene

Relevant External Links for CMTM6

Human Genome Epidemiology (HuGE) Navigator
CMTM6
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CMTM6

No disorders were found for CMTM6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CMTM6 Gene

Publications for CMTM6 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 67
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  4. Proteomic analysis of podocyte exosome-enriched fraction from normal human urine. (PMID: 23376485) Prunotto M. … Moll S. (J Proteomics 2013) 3
  5. Discovery and refinement of loci associated with lipid levels. (PMID: 24097068) . … Abecasis G.R. (Nat. Genet. 2013) 3

Products for CMTM6 Gene

Sources for CMTM6 Gene

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