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Aliases for CMTM6 Gene

Aliases for CMTM6 Gene

  • CKLF Like MARVEL Transmembrane Domain Containing 6 2 3 5
  • Chemokine-Like Factor Superfamily Member 6 3 4
  • Chemokine-Like Factor Super Family 6 2 3
  • Chemokine-Like Factor Superfamily 6 2 3
  • CKLFSF6 3 4
  • CKLF-Like MARVEL Transmembrane Domain-Containing Protein 6 3
  • CKLF-Like MARVEL Transmembrane Domain Containing 6 2
  • PRO2219 3

External Ids for CMTM6 Gene

Previous HGNC Symbols for CMTM6 Gene

  • CKLFSF6

Summaries for CMTM6 Gene

Entrez Gene Summary for CMTM6 Gene

  • This gene belongs to the chemokine-like factor gene superfamily, a novel family that is similar to the chemokine and transmembrane 4 superfamilies. This gene is one of several chemokine-like factor genes located in a cluster on chromosome 3. This gene is widely expressed in many tissues, but the exact function of the encoded protein is unknown. [provided by RefSeq, Jul 2008]

GeneCards Summary for CMTM6 Gene

CMTM6 (CKLF Like MARVEL Transmembrane Domain Containing 6) is a Protein Coding gene. Among its related pathways are Innate Immune System. GO annotations related to this gene include cytokine activity. An important paralog of this gene is CMTM4.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CMTM6 Gene

Genomics for CMTM6 Gene

Regulatory Elements for CMTM6 Gene

Enhancers for CMTM6 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G032468 1.5 Ensembl ENCODE dbSUPER 18 +33.3 33331 2.3 HDGF ATF1 FOXA2 SIN3A ARID4B FEZF1 ZNF2 GATA2 ZNF207 FOS CMTM6 RPL31P18 CMTM7 GC03P032466
GH03G032430 1.7 FANTOM5 Ensembl ENCODE dbSUPER 15.5 +71.0 70952 3.3 TBP PKNOX1 TBL1XR1 FEZF1 CEBPG FOSL1 ZFHX2 GATA2 NFYB SCRT2 CMTM6 RPL31P18 DYNC1LI1 CMTM7 GC03M031988 GC03P032466
GH03G032497 1.2 Ensembl ENCODE dbSUPER 18.6 +5.0 5008 1.2 HDGF MTA2 JUNB TBX21 FOXA1 ZNF316 TARDBP ADNP IKZF1 NBN CMTM6 DYNC1LI1 CNOT10 CNOT10-AS1 SUGT1P2 GC03P032466
GH03G032418 1.9 FANTOM5 Ensembl ENCODE dbSUPER 11.7 +81.1 81125 6.8 PKNOX1 FOXA2 SIN3A DMAP1 FEZF1 ZNF2 YY1 GATA2 FOS JUNB CMTM7 CMTM6 RPL31P18 DYNC1LI1 GC03M031988 GC03P032466
GH03G032501 1.3 ENCODE dbSUPER 16.7 +1.1 1068 2.7 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 YY1 KLF13 CMTM6 DYNC1LI1 CNOT10 CNOT10-AS1 SUGT1P2 GC03P032466
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CMTM6 on UCSC Golden Path with GeneCards custom track

Promoters for CMTM6 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000150542 1208 2001 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A FEZF1 YY1 KLF13 SP3

Genomic Location for CMTM6 Gene

Chromosome:
3
Start:
32,481,312 bp from pter
End:
32,503,408 bp from pter
Size:
22,097 bases
Orientation:
Minus strand

Genomic View for CMTM6 Gene

Genes around CMTM6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CMTM6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CMTM6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CMTM6 Gene

Proteins for CMTM6 Gene

  • Protein details for CMTM6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NX76-CKLF6_HUMAN
    Recommended name:
    CKLF-like MARVEL transmembrane domain-containing protein 6
    Protein Accession:
    Q9NX76
    Secondary Accessions:
    • Q6IAC4

    Protein attributes for CMTM6 Gene

    Size:
    183 amino acids
    Molecular mass:
    20419 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CMTM6 Gene

Post-translational modifications for CMTM6 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CMTM6 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CMTM6 Gene

Domains & Families for CMTM6 Gene

Gene Families for CMTM6 Gene

Protein Domains for CMTM6 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for CMTM6 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9NX76

UniProtKB/Swiss-Prot:

CKLF6_HUMAN :
  • Belongs to the chemokine-like factor family.
Family:
  • Belongs to the chemokine-like factor family.
genes like me logo Genes that share domains with CMTM6: view

Function for CMTM6 Gene

Gene Ontology (GO) - Molecular Function for CMTM6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005125 cytokine activity IEA --
genes like me logo Genes that share ontologies with CMTM6: view
genes like me logo Genes that share phenotypes with CMTM6: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CMTM6 Gene

Localization for CMTM6 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CMTM6 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CMTM6 gene
Compartment Confidence
plasma membrane 5
extracellular 5
lysosome 4
cytoskeleton 2
cytosol 2

Gene Ontology (GO) - Cellular Components for CMTM6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space IEA --
GO:0005886 plasma membrane TAS --
GO:0016020 membrane IDA 19946888
GO:0016021 integral component of membrane IEA,IBA --
GO:0035577 azurophil granule membrane TAS --
genes like me logo Genes that share ontologies with CMTM6: view

Pathways & Interactions for CMTM6 Gene

genes like me logo Genes that share pathways with CMTM6: view

Pathways by source for CMTM6 Gene

3 Reactome pathways for CMTM6 Gene

Interacting Proteins for CMTM6 Gene

Gene Ontology (GO) - Biological Process for CMTM6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006935 chemotaxis IEA --
GO:0043312 neutrophil degranulation TAS --
genes like me logo Genes that share ontologies with CMTM6: view

No data available for SIGNOR curated interactions for CMTM6 Gene

Drugs & Compounds for CMTM6 Gene

No Compound Related Data Available

Transcripts for CMTM6 Gene

mRNA/cDNA for CMTM6 Gene

Unigene Clusters for CMTM6 Gene

CKLF-like MARVEL transmembrane domain containing 6:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CMTM6 Gene

No ASD Table

Relevant External Links for CMTM6 Gene

GeneLoc Exon Structure for
CMTM6
ECgene alternative splicing isoforms for
CMTM6

Expression for CMTM6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CMTM6 Gene

mRNA differential expression in normal tissues according to GTEx for CMTM6 Gene

This gene is overexpressed in Whole Blood (x5.9).

Protein differential expression in normal tissues from HIPED for CMTM6 Gene

This gene is overexpressed in Monocytes (26.7), Bone (9.2), and Peripheral blood mononuclear cells (9.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for CMTM6 Gene



NURSA nuclear receptor signaling pathways regulating expression of CMTM6 Gene:

CMTM6

SOURCE GeneReport for Unigene cluster for CMTM6 Gene:

Hs.380627

mRNA Expression by UniProt/SwissProt for CMTM6 Gene:

Q9NX76-CKLF6_HUMAN
Tissue specificity: Expressed in the leukocytes, placenta and testis.

Evidence on tissue expression from TISSUES for CMTM6 Gene

  • Blood(4.4)
  • Lung(2)
  • Nervous system(2)
genes like me logo Genes that share expression patterns with CMTM6: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for CMTM6 Gene

Orthologs for CMTM6 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CMTM6 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CMTM6 34 35
  • 99.64 (n)
dog
(Canis familiaris)
Mammalia CMTM6 34 35
  • 81.14 (n)
rat
(Rattus norvegicus)
Mammalia Cmtm6 34
  • 79.42 (n)
mouse
(Mus musculus)
Mammalia Cmtm6 34 16 35
  • 77.96 (n)
cow
(Bos Taurus)
Mammalia CMTM6 34 35
  • 75.46 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia CMTM6 35
  • 73 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CMTM6 35
  • 54 (a)
OneToOne
chicken
(Gallus gallus)
Aves CMTM6 34 35
  • 56.93 (n)
lizard
(Anolis carolinensis)
Reptilia CMTM6 35
  • 77 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia cmtm6 34
  • 49.52 (n)
zebrafish
(Danio rerio)
Actinopterygii cmtm6 34 35
  • 46.29 (n)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.2454 35
  • 13 (a)
OneToMany
Species where no ortholog for CMTM6 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CMTM6 Gene

ENSEMBL:
Gene Tree for CMTM6 (if available)
TreeFam:
Gene Tree for CMTM6 (if available)

Paralogs for CMTM6 Gene

Paralogs for CMTM6 Gene

(1) SIMAP similar genes for CMTM6 Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for CMTM6 Gene

genes like me logo Genes that share paralogs with CMTM6: view

Variants for CMTM6 Gene

Sequence variations from dbSNP and Humsavar for CMTM6 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000017925 -- 32,484,287(+) AAAAC(A/T)TCCAG intron-variant
rs1000047242 -- 32,501,115(+) AACCC(A/G)GGAGG intron-variant
rs1000234027 -- 32,481,160(+) ATGGG(A/G)AATGG downstream-variant-500B
rs1000239822 -- 32,481,721(+) AAAGG(C/T)TAACC utr-variant-3-prime
rs1000286400 -- 32,481,409(+) AATAT(A/C)AAATG utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for CMTM6 Gene

Variant ID Type Subtype PubMed ID
esv3595776 CNV loss 21293372
nsv1003285 CNV gain 25217958
nsv834652 CNV loss 17160897

Variation tolerance for CMTM6 Gene

Residual Variation Intolerance Score: 60.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.54; 29.91% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CMTM6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CMTM6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CMTM6 Gene

Disorders for CMTM6 Gene

Relevant External Links for CMTM6

Human Genome Epidemiology (HuGE) Navigator
CMTM6
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CMTM6

No disorders were found for CMTM6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CMTM6 Gene

Publications for CMTM6 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. Identification of eight genes encoding chemokine-like factor superfamily members 1-8 (CKLFSF1-8) by in silico cloning and experimental validation. (PMID: 12782130) Han W. … Ma D. (Genomics 2003) 3 4 64
  4. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64
  5. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64

Products for CMTM6 Gene

Sources for CMTM6 Gene

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