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Aliases for CMTM3 Gene

Aliases for CMTM3 Gene

  • CKLF Like MARVEL Transmembrane Domain Containing 3 2 3
  • CKLF-Like MARVEL Transmembrane Domain Containing 3 2 3 5
  • Chemokine-Like Factor Superfamily Member 3 3 4
  • CKLFSF3 3 4
  • Chemokine-Like Factor Superfamily 3 2
  • BNAS2 3

External Ids for CMTM3 Gene

Previous HGNC Symbols for CMTM3 Gene


Previous GeneCards Identifiers for CMTM3 Gene

  • GC16P065196
  • GC16P052514

Summaries for CMTM3 Gene

Entrez Gene Summary for CMTM3 Gene

  • This gene belongs to the chemokine-like factor gene superfamily, a novel family that is similar to the chemokine and the transmembrane 4 superfamilies of signaling molecules. This gene is one of several chemokine-like factor genes located in a cluster on chromosome 16. Alternatively spliced transcript variants containing different 5' UTRs, but encoding the same protein, have been identified. [provided by RefSeq, Jul 2008]

GeneCards Summary for CMTM3 Gene

CMTM3 (CKLF Like MARVEL Transmembrane Domain Containing 3) is a Protein Coding gene. Among its related pathways are B Cell Receptor Signaling Pathway (WikiPathways). GO annotations related to this gene include cytokine activity. An important paralog of this gene is PLP2.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CMTM3 Gene

Genomics for CMTM3 Gene

Regulatory Elements for CMTM3 Gene

Promoters for CMTM3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around CMTM3 on UCSC Golden Path with GeneCards custom track

Genomic Location for CMTM3 Gene

66,603,874 bp from pter
66,613,892 bp from pter
10,019 bases
Plus strand

Genomic View for CMTM3 Gene

Genes around CMTM3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CMTM3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CMTM3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CMTM3 Gene

Proteins for CMTM3 Gene

  • Protein details for CMTM3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    CKLF-like MARVEL transmembrane domain-containing protein 3
    Protein Accession:
    Secondary Accessions:
    • A6NCL9
    • Q8IUU8
    • Q8IWQ6
    • Q8IYE2
    • Q8IZ39
    • Q8IZ59

    Protein attributes for CMTM3 Gene

    182 amino acids
    Molecular mass:
    19714 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for CMTM3 Gene


neXtProt entry for CMTM3 Gene

Proteomics data for CMTM3 Gene at MOPED

Post-translational modifications for CMTM3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Antibody Products

  • Santa Cruz Biotechnology (SCBT) Antibodies for CMTM3

No data available for DME Specific Peptides for CMTM3 Gene

Domains & Families for CMTM3 Gene

Gene Families for CMTM3 Gene

Protein Domains for CMTM3 Gene


Graphical View of Domain Structure for InterPro Entry



  • Contains 1 MARVEL domain.
  • Belongs to the chemokine-like factor family.
  • Contains 1 MARVEL domain.
  • Belongs to the chemokine-like factor family.
genes like me logo Genes that share domains with CMTM3: view

Function for CMTM3 Gene

Gene Ontology (GO) - Molecular Function for CMTM3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with CMTM3: view

Phenotypes for CMTM3 Gene

genes like me logo Genes that share phenotypes with CMTM3: view

Animal Model Products

miRNA for CMTM3 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CMTM3 Gene

Localization for CMTM3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CMTM3 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

Jensen Localization Image for CMTM3 Gene COMPARTMENTS Subcellular localization image for CMTM3 gene
Compartment Confidence
extracellular 3
nucleus 3
plasma membrane 3

Gene Ontology (GO) - Cellular Components for CMTM3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with CMTM3: view

Pathways & Interactions for CMTM3 Gene

genes like me logo Genes that share pathways with CMTM3: view

Pathways by source for CMTM3 Gene

1 BioSystems pathway for CMTM3 Gene

Gene Ontology (GO) - Biological Process for CMTM3 Gene


No data available for SIGNOR curated interactions for CMTM3 Gene

Drugs & Compounds for CMTM3 Gene

No Compound Related Data Available

Transcripts for CMTM3 Gene

Unigene Clusters for CMTM3 Gene

CKLF-like MARVEL transmembrane domain containing 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CMTM3 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b · 2c ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b · 7c ^ 8a · 8b · 8c · 8d · 8e · 8f ^ 9
SP1: - - - - - - -
SP2: - - -
SP3: - -
SP4: - - -
SP5: -
SP6: - - - - -
SP7: - - - -
SP8: - -
SP9: - - - - - - - - - - - - - -

Relevant External Links for CMTM3 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CMTM3 Gene

mRNA expression in normal human tissues for CMTM3 Gene

mRNA differential expression in normal tissues according to GTEx for CMTM3 Gene

This gene is overexpressed in Whole Blood (x5.3).

Protein differential expression in normal tissues from HIPED for CMTM3 Gene

This gene is overexpressed in Placenta (25.6), Fetal testis (14.8), Ovary (10.9), Testis (7.5), and NK cells (6.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for CMTM3 Gene

SOURCE GeneReport for Unigene cluster for CMTM3 Gene Hs.298198

mRNA Expression by UniProt/SwissProt for CMTM3 Gene

Tissue specificity: Expressed in the leukocytes, placenta and testis.
genes like me logo Genes that share expression patterns with CMTM3: view

Protein tissue co-expression partners for CMTM3 Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery for CMTM3 Gene

Orthologs for CMTM3 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CMTM3 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia CMTM3 35
  • 89.08 (n)
  • 90.06 (a)
CMTM3 36
  • 89 (a)
(Canis familiaris)
Mammalia CMTM3 35
  • 90.17 (n)
  • 92.31 (a)
CMTM3 36
  • 83 (a)
(Mus musculus)
Mammalia Cmtm3 35
  • 85.71 (n)
  • 88.46 (a)
Cmtm3 16
Cmtm3 36
  • 84 (a)
(Pan troglodytes)
Mammalia CMTM3 35
  • 89.63 (n)
  • 85.98 (a)
CMTM3 36
  • 98 (a)
(Rattus norvegicus)
Mammalia Cmtm3 35
  • 83.7 (n)
  • 86.26 (a)
(Monodelphis domestica)
Mammalia CMTM3 36
  • 61 (a)
(Gallus gallus)
Aves CMTM3 35
  • 69.17 (n)
  • 70.62 (a)
CMTM3 36
  • 67 (a)
(Anolis carolinensis)
Reptilia CMTM3 36
  • 52 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia cmtm3 35
  • 63.77 (n)
  • 56.52 (a)
Str.9768 35
African clawed frog
(Xenopus laevis)
Amphibia Xl.9811 35
(Danio rerio)
Actinopterygii cmtm3 35
  • 65.8 (n)
  • 57.79 (a)
cmtm3 36
  • 48 (a)
Species with no ortholog for CMTM3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CMTM3 Gene

Gene Tree for CMTM3 (if available)
Gene Tree for CMTM3 (if available)

Paralogs for CMTM3 Gene

Paralogs for CMTM3 Gene

(2) SIMAP similar genes for CMTM3 Gene using alignment to 8 proteins:

genes like me logo Genes that share paralogs with CMTM3: view

Variants for CMTM3 Gene

Structural Variations from Database of Genomic Variants (DGV) for CMTM3 Gene

Variant ID Type Subtype PubMed ID
nsv906786 CNV Loss 21882294

Variation tolerance for CMTM3 Gene

Residual Variation Intolerance Score: 43.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.40; 8.81% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CMTM3 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for CMTM3 Gene

Disorders for CMTM3 Gene

Relevant External Links for CMTM3

Human Genome Epidemiology (HuGE) Navigator
Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for CMTM3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CMTM3 Gene

Publications for CMTM3 Gene

  1. Identification and characterization of a novel BASH N terminus-associated protein, BNAS2. (PMID: 15087455) Imamura Y. … Kitamura D. (J. Biol. Chem. 2004) 2 3 67
  2. CMTM3, located at the critical tumor suppressor locus 16q22.1, is silenced by CpG methylation in carcinomas and inhibits tumor cell growth through inducing apoptosis. (PMID: 19509237) Wang Y. … Han W. (Cancer Res. 2009) 3 23
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  4. CMTM3 is frequently reduced in clear cell renal cell carcinoma and exhibits tumor suppressor activities. (PMID: 23907292) Xie J. … Wang X. (Clin Transl Oncol 2013) 3
  5. CMTM3 inhibits cell migration and invasion and correlates with favorable prognosis in gastric cancer. (PMID: 24131472) Su Y. … Han W. (Cancer Sci. 2013) 3

Products for CMTM3 Gene

Sources for CMTM3 Gene

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