Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CMSS1 Gene

Aliases for CMSS1 Gene

  • Cms1 Ribosomal Small Subunit Homolog (Yeast) 2 3
  • C3orf26 3 4
  • Cms1 Ribosomal Small Subunit Homolog 4
  • Chromosome 3 Open Reading Frame 26 2

External Ids for CMSS1 Gene

Previous HGNC Symbols for CMSS1 Gene

  • C3orf26

Previous GeneCards Identifiers for CMSS1 Gene

  • GC03P099539

Summaries for CMSS1 Gene

GeneCards Summary for CMSS1 Gene

CMSS1 (Cms1 Ribosomal Small Subunit Homolog (Yeast)) is a Protein Coding gene. Diseases associated with CMSS1 include refractive error. GO annotations related to this gene include nucleic acid binding and poly(A) RNA binding.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CMSS1 Gene

Genomics for CMSS1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for CMSS1 Gene

Chromosome:
3
Start:
99,817,834 bp from pter
End:
100,178,632 bp from pter
Size:
360,799 bases
Orientation:
Plus strand

Genomic View for CMSS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CMSS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CMSS1 Gene

No data available for Regulatory Elements for CMSS1 Gene

Proteins for CMSS1 Gene

  • Protein details for CMSS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BQ75-CMS1_HUMAN
    Recommended name:
    Protein CMSS1
    Protein Accession:
    Q9BQ75
    Secondary Accessions:
    • A8K5S7
    • B4DUM1
    • E9PHS3

    Protein attributes for CMSS1 Gene

    Size:
    279 amino acids
    Molecular mass:
    31884 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for CMSS1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CMSS1 Gene

Proteomics data for CMSS1 Gene at MOPED

Post-translational modifications for CMSS1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CMSS1 Gene

No data available for DME Specific Peptides for CMSS1 Gene

Domains & Families for CMSS1 Gene

Protein Domains for CMSS1 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q9BQ75

UniProtKB/Swiss-Prot:

CMS1_HUMAN :
  • Belongs to the CMS1 family.
Family:
  • Belongs to the CMS1 family.
genes like me logo Genes that share domains with CMSS1: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for CMSS1 Gene

Function for CMSS1 Gene

Gene Ontology (GO) - Molecular Function for CMSS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0044822 poly(A) RNA binding IDA 22658674
genes like me logo Genes that share ontologies with CMSS1: view

Phenotypes for CMSS1 Gene

genes like me logo Genes that share phenotypes with CMSS1: view

Animal Model Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CMSS1

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for CMSS1 Gene

Localization for CMSS1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CMSS1 Gene COMPARTMENTS Subcellular localization image for CMSS1 gene
Compartment Confidence
mitochondrion 2
nucleus 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for CMSS1 Gene

Pathways & Interactions for CMSS1 Gene

SuperPathways for CMSS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CMSS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CMSS1 Gene

Drugs & Compounds for CMSS1 Gene

No Compound Related Data Available

Transcripts for CMSS1 Gene

Unigene Clusters for CMSS1 Gene

Cms1 ribosomal small subunit homolog (yeast):
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CMSS1

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CMSS1 Gene

No ASD Table

Relevant External Links for CMSS1 Gene

GeneLoc Exon Structure for
CMSS1
ECgene alternative splicing isoforms for
CMSS1

Expression for CMSS1 Gene

mRNA expression in normal human tissues for CMSS1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for CMSS1 Gene

This gene is overexpressed in Lung (29.9), Esophagus (19.7), and Kidney (7.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for CMSS1 Gene



SOURCE GeneReport for Unigene cluster for CMSS1 Gene Hs.581320

genes like me logo Genes that share expression patterns with CMSS1: view

Protein tissue co-expression partners for CMSS1 Gene

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for CMSS1 Gene

Orthologs for CMSS1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CMSS1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia CMSS1 35
  • 88.89 (n)
  • 86.02 (a)
CMSS1 36
  • 86 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CMSS1 35
  • 90.68 (n)
  • 90.68 (a)
CMSS1 36
  • 86 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Cmss1 35
  • 86.3 (n)
  • 84 (a)
Cmss1 16
Cmss1 36
  • 84 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia CMSS1 35
  • 99.16 (n)
  • 98.21 (a)
CMSS1 36
  • 97 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Cmss1 35
  • 84.97 (n)
  • 83.64 (a)
oppossum
(Monodelphis domestica)
Mammalia CMSS1 36
  • 70 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CMSS1 36
  • 71 (a)
OneToOne
chicken
(Gallus gallus)
Aves C1H3ORF26 35
  • 68.43 (n)
  • 63.02 (a)
CMSS1 36
  • 67 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CMSS1 36
  • 60 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia cmss1 35
  • 63.08 (n)
  • 54.12 (a)
Str.1566 35
African clawed frog
(Xenopus laevis)
Amphibia Xl.5091 35
zebrafish
(Danio rerio)
Actinopterygii cmss1 35
  • 57.97 (n)
  • 50.36 (a)
cmss1 36
  • 46 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 41 (a)
OneToOne
Species with no ortholog for CMSS1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CMSS1 Gene

ENSEMBL:
Gene Tree for CMSS1 (if available)
TreeFam:
Gene Tree for CMSS1 (if available)

Paralogs for CMSS1 Gene

Pseudogenes.org Pseudogenes for CMSS1 Gene

genes like me logo Genes that share paralogs with CMSS1: view

No data available for Paralogs for CMSS1 Gene

Variants for CMSS1 Gene

Sequence variations from dbSNP and Humsavar for CMSS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs366974 -- 100,118,934(-) ATATT(C/T)CCCTT intron-variant
rs403858 -- 100,170,557(-) TTTTT(C/G/T)TTTTT intron-variant
rs426813 -- 100,118,866(-) TGTGT(G/T)CTGTT intron-variant
rs439097 -- 100,170,554(-) TTTTT(C/T)TTAAA intron-variant
rs793470 -- 99,829,430(-) ATCTA(C/T)AAGGG intron-variant

Variation tolerance for CMSS1 Gene

Residual Variation Intolerance Score: 85.78% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.82; 34.29% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CMSS1 Gene

HapMap Linkage Disequilibrium report
CMSS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for CMSS1 Gene

Disorders for CMSS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CMSS1 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
refractive error
  • eye refraction disorder
- elite association
Search CMSS1 in MalaCards View complete list of genes associated with diseases

Relevant External Links for CMSS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CMSS1
genes like me logo Genes that share disorders with CMSS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CMSS1 Gene

Publications for CMSS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 67
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 67
  3. Proteomic analysis of the epidermal growth factor receptor (EGFR) interactome and post-translational modifications associated with receptor endocytosis in response to EGF and stress. (PMID: 24797263) Tong J. … Moran M.F. (Mol. Cell Proteomics 2014) 67
  4. Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error. (PMID: 24144296) Cheng C.Y. … Baird P.N. (Am. J. Hum. Genet. 2013) 67
  5. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 67

Products for CMSS1 Gene

Sources for CMSS1 Gene

Back to Top

Content