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Aliases for CMSS1 Gene

Aliases for CMSS1 Gene

  • Cms1 Ribosomal Small Subunit Homolog (Yeast) 2 3 5
  • C3orf26 3 4
  • Cms1 Ribosomal Small Subunit Homolog 4
  • Chromosome 3 Open Reading Frame 26 2

External Ids for CMSS1 Gene

Previous HGNC Symbols for CMSS1 Gene

  • C3orf26

Previous GeneCards Identifiers for CMSS1 Gene

  • GC03P099539

Summaries for CMSS1 Gene

GeneCards Summary for CMSS1 Gene

CMSS1 (Cms1 Ribosomal Small Subunit Homolog (Yeast)) is a Protein Coding gene. Diseases associated with CMSS1 include refractive error. GO annotations related to this gene include nucleic acid binding and poly(A) RNA binding.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CMSS1 Gene

Genomics for CMSS1 Gene

Regulatory Elements for CMSS1 Gene

Promoters for CMSS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around CMSS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CMSS1 Gene

99,817,834 bp from pter
100,178,632 bp from pter
360,799 bases
Plus strand

Genomic View for CMSS1 Gene

Genes around CMSS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CMSS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CMSS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CMSS1 Gene

Proteins for CMSS1 Gene

  • Protein details for CMSS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Protein CMSS1
    Protein Accession:
    Secondary Accessions:
    • A8K5S7
    • B4DUM1
    • E9PHS3

    Protein attributes for CMSS1 Gene

    279 amino acids
    Molecular mass:
    31884 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for CMSS1 Gene


neXtProt entry for CMSS1 Gene

Proteomics data for CMSS1 Gene at MOPED

Post-translational modifications for CMSS1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CMSS1 Gene

No data available for DME Specific Peptides for CMSS1 Gene

Domains & Families for CMSS1 Gene

Protein Domains for CMSS1 Gene


Graphical View of Domain Structure for InterPro Entry



  • Belongs to the CMS1 family.
  • Belongs to the CMS1 family.
genes like me logo Genes that share domains with CMSS1: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for CMSS1 Gene

Function for CMSS1 Gene

genes like me logo Genes that share phenotypes with CMSS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CMSS1 Gene

Localization for CMSS1 Gene

Subcellular locations from

Jensen Localization Image for CMSS1 Gene COMPARTMENTS Subcellular localization image for CMSS1 gene
Compartment Confidence
nucleus 4
mitochondrion 2
plasma membrane 2
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for CMSS1 Gene

Pathways & Interactions for CMSS1 Gene

SuperPathways for CMSS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CMSS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for CMSS1 Gene

Drugs & Compounds for CMSS1 Gene

No Compound Related Data Available

Transcripts for CMSS1 Gene

Unigene Clusters for CMSS1 Gene

Cms1 ribosomal small subunit homolog (yeast):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CMSS1 Gene

No ASD Table

Relevant External Links for CMSS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CMSS1 Gene

mRNA expression in normal human tissues for CMSS1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for CMSS1 Gene

This gene is overexpressed in Lung (29.9), Esophagus (19.7), and Kidney (7.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for CMSS1 Gene

SOURCE GeneReport for Unigene cluster for CMSS1 Gene Hs.581320

genes like me logo Genes that share expression patterns with CMSS1: view

Protein tissue co-expression partners for CMSS1 Gene

Primer Products

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for CMSS1 Gene

Orthologs for CMSS1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CMSS1 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia CMSS1 35
  • 88.89 (n)
  • 86.02 (a)
CMSS1 36
  • 86 (a)
(Canis familiaris)
Mammalia CMSS1 35
  • 90.68 (n)
  • 90.68 (a)
CMSS1 36
  • 86 (a)
(Mus musculus)
Mammalia Cmss1 35
  • 86.3 (n)
  • 84 (a)
Cmss1 16
Cmss1 36
  • 84 (a)
(Pan troglodytes)
Mammalia CMSS1 35
  • 99.16 (n)
  • 98.21 (a)
CMSS1 36
  • 97 (a)
(Rattus norvegicus)
Mammalia Cmss1 35
  • 84.97 (n)
  • 83.64 (a)
(Monodelphis domestica)
Mammalia CMSS1 36
  • 70 (a)
(Ornithorhynchus anatinus)
Mammalia CMSS1 36
  • 71 (a)
(Gallus gallus)
Aves C1H3ORF26 35
  • 68.43 (n)
  • 63.02 (a)
CMSS1 36
  • 67 (a)
(Anolis carolinensis)
Reptilia CMSS1 36
  • 60 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia cmss1 35
  • 63.08 (n)
  • 54.12 (a)
Str.1566 35
African clawed frog
(Xenopus laevis)
Amphibia Xl.5091 35
(Danio rerio)
Actinopterygii cmss1 35
  • 57.97 (n)
  • 50.36 (a)
cmss1 36
  • 46 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 41 (a)
Species with no ortholog for CMSS1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CMSS1 Gene

Gene Tree for CMSS1 (if available)
Gene Tree for CMSS1 (if available)

Paralogs for CMSS1 Gene Pseudogenes for CMSS1 Gene

genes like me logo Genes that share paralogs with CMSS1: view

No data available for Paralogs for CMSS1 Gene

Variants for CMSS1 Gene

Sequence variations from dbSNP and Humsavar for CMSS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs11537816 - 100,167,818(+) CGGCC(A/G)TCCGA reference, missense
rs11537817 - 100,166,392(+) AAAAG(A/G)AAGTA reference, missense
rs426813 -- 100,118,866(-) TGTGT(G/T)CTGTT intron-variant
rs366974 -- 100,118,934(-) ATATT(C/T)CCCTT intron-variant
rs439097 -- 100,170,554(-) TTTTT(C/T)TTAAA intron-variant

Variation tolerance for CMSS1 Gene

Residual Variation Intolerance Score: 85.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.82; 34.29% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CMSS1 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for CMSS1 Gene

Disorders for CMSS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CMSS1 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
refractive error
  • refractive errors
- elite association - COSMIC cancer census association via MalaCards
Search CMSS1 in MalaCards View complete list of genes associated with diseases

Relevant External Links for CMSS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
genes like me logo Genes that share disorders with CMSS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CMSS1 Gene

Publications for CMSS1 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  4. Proteomic analysis of the epidermal growth factor receptor (EGFR) interactome and post-translational modifications associated with receptor endocytosis in response to EGF and stress. (PMID: 24797263) Tong J. … Moran M.F. (Mol. Cell Proteomics 2014) 3
  5. Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error. (PMID: 24144296) Cheng C.Y. … Baird P.N. (Am. J. Hum. Genet. 2013) 3

Products for CMSS1 Gene

Sources for CMSS1 Gene

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