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Aliases for CMC4 Gene

Aliases for CMC4 Gene

  • C-X(9)-C Motif Containing 4 2 3 5
  • Mature T-Cell Proliferation 1 Neighbor Protein 3 4
  • Mature T-Cell Proliferation-1 Type A 3 4
  • Mature T-Cell Proliferation 1 2 3
  • Protein P8 MTCP-1 3 4
  • MTCP-1 Type A 3 4
  • MTCP1NB 3 4
  • P8MTCP1 3 4
  • MTCP1 3 4
  • C6.1B 3 4
  • C-X(9)-C Motif Containing 4 Homolog (S. Cerevisiae) 2
  • Mature T-Cell Proliferation 1 Neighbor 2
  • C-X(9)-C Motif Containing 4 Homolog 3
  • Isoform P8 2
  • MTCP1B 3
  • P8 3

External Ids for CMC4 Gene

Previous HGNC Symbols for CMC4 Gene

  • MTCP1
  • MTCP1NB

Previous GeneCards Identifiers for CMC4 Gene

  • GC0XM154291

Summaries for CMC4 Gene

Entrez Gene Summary for CMC4 Gene

  • This gene was identified by involvement in some t(X;14) translocations associated with mature T-cell proliferations. This region has a complex gene structure, with a common promoter and 5' exon spliced to two different sets of 3' exons that encode two different proteins. This gene represents the downstream 8 kDa protein that localizes to mitochondria.[provided by RefSeq, Mar 2009]

GeneCards Summary for CMC4 Gene

CMC4 (C-X(9)-C Motif Containing 4) is a Protein Coding gene.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CMC4 Gene

Genomics for CMC4 Gene

Regulatory Elements for CMC4 Gene

Enhancers for CMC4 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around CMC4 on UCSC Golden Path with GeneCards custom track

Promoters for CMC4 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around CMC4 on UCSC Golden Path with GeneCards custom track

Genomic Location for CMC4 Gene

Chromosome:
X
Start:
155,061,622 bp from pter
End:
155,071,362 bp from pter
Size:
9,741 bases
Orientation:
Minus strand

Genomic View for CMC4 Gene

Genes around CMC4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CMC4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CMC4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CMC4 Gene

Proteins for CMC4 Gene

  • Protein details for CMC4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P56277-CMC4_HUMAN
    Recommended name:
    Cx9C motif-containing protein 4
    Protein Accession:
    P56277
    Secondary Accessions:
    • Q5HYP9

    Protein attributes for CMC4 Gene

    Size:
    68 amino acids
    Molecular mass:
    7747 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for CMC4 Gene

    Alternative splice isoforms for CMC4 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CMC4 Gene

Proteomics data for CMC4 Gene at MOPED

Post-translational modifications for CMC4 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CMC4 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CMC4 Gene

Domains & Families for CMC4 Gene

Protein Domains for CMC4 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for CMC4 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P56277

UniProtKB/Swiss-Prot:

CMC4_HUMAN :
  • The twin Cx9C motifs are involved in the recognition by the mitochondrial disulfide relay system.
  • Belongs to the CMC4 family.
Domain:
  • The twin Cx9C motifs are involved in the recognition by the mitochondrial disulfide relay system.
Family:
  • Belongs to the CMC4 family.
genes like me logo Genes that share domains with CMC4: view

No data available for Gene Families for CMC4 Gene

Function for CMC4 Gene

genes like me logo Genes that share phenotypes with CMC4: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CMC4 Gene

Localization for CMC4 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CMC4 Gene

Mitochondrion.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CMC4 Gene COMPARTMENTS Subcellular localization image for CMC4 gene
Compartment Confidence
mitochondrion 5
extracellular 3
cytosol 1
nucleus 1

No data available for Gene Ontology (GO) - Cellular Components for CMC4 Gene

Pathways & Interactions for CMC4 Gene

SuperPathways for CMC4 Gene

No Data Available

Interacting Proteins for CMC4 Gene

Selected Interacting proteins: P56277-CMC4_HUMAN for CMC4 Gene via I2D

Symbol External ID(s) Details
AKT2
EWSR1

Gene Ontology (GO) - Biological Process for CMC4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CMC4 Gene

Drugs & Compounds for CMC4 Gene

No Compound Related Data Available

Transcripts for CMC4 Gene

mRNA/cDNA for CMC4 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CMC4 Gene

C-x(9)-C motif containing 4 homolog (S. cerevisiae):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CMC4 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8a · 8b
SP1:
SP2: -
SP3: - - - - - -
SP4:

Relevant External Links for CMC4 Gene

GeneLoc Exon Structure for
CMC4
ECgene alternative splicing isoforms for
CMC4

Expression for CMC4 Gene

mRNA expression in normal human tissues for CMC4 Gene

Protein differential expression in normal tissues from HIPED for CMC4 Gene

This gene is overexpressed in Fetal testis (13.1), Heart (9.3), Pancreas (8.4), and Liver (6.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MOPED, and MaxQB for CMC4 Gene



SOURCE GeneReport for Unigene cluster for CMC4 Gene Hs.6917

mRNA Expression by UniProt/SwissProt for CMC4 Gene

P56277-CMC4_HUMAN
Tissue specificity: Expressed in many tissues with a relatively high level in skeletal muscle.
genes like me logo Genes that share expression patterns with CMC4: view

Protein tissue co-expression partners for CMC4 Gene

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for CMC4 Gene

Orthologs for CMC4 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CMC4 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia MTCP1NB 35
  • 92.19 (n)
  • 87.5 (a)
CMC4 36
  • 82 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CMC4 35
  • 92.45 (n)
  • 92.45 (a)
-- 36
  • 78 (a)
OneToMany
-- 36
  • 88 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Mtcp1 35
  • 86.76 (n)
  • 88.24 (a)
Mtcp1 16
Mtcp1 36
  • 88 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia CMC4 35
  • 99.02 (n)
  • 97.06 (a)
CMC4 36
  • 97 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC102546764 35
  • 71.57 (n)
  • 66.18 (a)
chicken
(Gallus gallus)
Aves MTCP1NB 35
  • 76.92 (n)
  • 80 (a)
CMC4 36
  • 76 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CMC4 36
  • 69 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii cmc4 36
  • 56 (a)
OneToOne
Species with no ortholog for CMC4:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CMC4 Gene

ENSEMBL:
Gene Tree for CMC4 (if available)
TreeFam:
Gene Tree for CMC4 (if available)

Paralogs for CMC4 Gene

No data available for Paralogs for CMC4 Gene

Variants for CMC4 Gene

Sequence variations from dbSNP and Humsavar for CMC4 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs2000326 -- 155,061,856(-) GAAGT(C/T)TGCAT reference, missense
rs3060678 -- 155,061,439(-) ttttt(-/TT)gagat downstream-variant-500B
rs35143146 -- 155,062,529(+) AAAGC(C/G)TAAAA intron-variant
rs73569627 -- 155,062,044(+) GTACA(A/G)GGAGG intron-variant
rs73569630 -- 155,062,909(+) AATAC(A/G)TATAA intron-variant

Variation tolerance for CMC4 Gene

Residual Variation Intolerance Score: 74.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.47; 10.29% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Relevant External Links for CMC4 Gene

Disorders for CMC4 Gene

UniProtKB/Swiss-Prot

CMC4_HUMAN
  • Note=Overexpressed in T-cell leukemia bearing a t(X;14) translocation. {ECO:0000269 PubMed:8361760}.

Relevant External Links for CMC4

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CMC4

No disorders were found for CMC4 Gene.

No data available for MalaCards and Genatlas for CMC4 Gene

Publications for CMC4 Gene

  1. Solution structure of human p8MTCP1, a cysteine-rich protein encoded by the MTCP1 oncogene, reveals a new alpha-helical assembly motif. (PMID: 9405159) Barthe P. … Roumestand C. (J. Mol. Biol. 1997) 2 3 4 67
  2. Genome-wide analysis of eukaryotic twin CX9C proteins. (PMID: 20922212) Cavallaro G. (Mol Biosyst 2010) 2 3
  3. MTCP-1: a novel gene on the human chromosome Xq28 translocated to the T cell receptor alpha/delta locus in mature T cell proliferations. (PMID: 8361760) Stern M.-H. … Kirsch I.R. (Oncogene 1993) 2 3
  4. Toward a confocal subcellular atlas of the human proteome. (PMID: 18029348) Barbe L. … Andersson-Svahn H. (Mol. Cell Proteomics 2008) 3
  5. The LIFEdb database in 2006. (PMID: 16381901) Mehrle A. … Wiemann S. (Nucleic Acids Res. 2006) 3

Products for CMC4 Gene

Sources for CMC4 Gene

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