Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CLYBL-AS2 Gene

Subcategory (RNA class) for CLYBL-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CLYBL-AS2 Gene

  • CLYBL Antisense RNA 2 2 3 5
  • CLYBL Antisense RNA 2 (Non-Protein Coding) 2

External Ids for CLYBL-AS2 Gene

Previous GeneCards Identifiers for CLYBL-AS2 Gene

  • GC00U933281
  • GC13M100343

Summaries for CLYBL-AS2 Gene

GeneCards Summary for CLYBL-AS2 Gene

CLYBL-AS2 (CLYBL Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CLYBL-AS2 Gene

Genomics for CLYBL-AS2 Gene

Regulatory Elements for CLYBL-AS2 Gene

Enhancers for CLYBL-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F099685 2.3 VISTA Ensembl ENCODE 0.8 +2.5 2472 6.1 ELF3 PKNOX1 ZNF2 GATA2 CREM CEBPB JUNB SMARCA4 CEBPA KDM1A GPR18 CLYBL DOCK9-AS2 CLYBL-AS2 GC13P099679
GH13F099693 0.5 ENCODE 0.8 -3.3 -3263 1.5 PKNOX1 SMARCA4 POLR2A ZNF223 CLYBL-AS2 CLYBL-AS1
GH13F099691 0.4 ENCODE 0.8 -0.8 -781 0.2 SPI1 CLYBL-AS2 CLYBL-AS1
GH13F099721 0.7 Ensembl ENCODE 0.3 -31.4 -31443 1.5 SMARCA4 ZNF24 SPI1 CLYBL-AS1 CLYBL-AS2
GH13F099701 0.5 ENCODE 0.4 -12.0 -12021 2.0 ZNF202 CTCF POU5F1 CLYBL-AS1 CLYBL CLYBL-AS2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CLYBL-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Location for CLYBL-AS2 Gene

Chromosome:
13
Start:
99,690,081 bp from pter
End:
99,690,971 bp from pter
Size:
891 bases
Orientation:
Minus strand

Genomic View for CLYBL-AS2 Gene

Genes around CLYBL-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CLYBL-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CLYBL-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CLYBL-AS2 Gene

Proteins for CLYBL-AS2 Gene

Post-translational modifications for CLYBL-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CLYBL-AS2 Gene

Domains & Families for CLYBL-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CLYBL-AS2 Gene

Function for CLYBL-AS2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CLYBL-AS2 Gene

Localization for CLYBL-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CLYBL-AS2 Gene

Pathways & Interactions for CLYBL-AS2 Gene

SuperPathways for CLYBL-AS2 Gene

No Data Available

Interacting Proteins for CLYBL-AS2 Gene

Gene Ontology (GO) - Biological Process for CLYBL-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CLYBL-AS2 Gene

Transcripts for CLYBL-AS2 Gene

mRNA/cDNA for CLYBL-AS2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CLYBL-AS2 Gene

No ASD Table

Relevant External Links for CLYBL-AS2 Gene

GeneLoc Exon Structure for
CLYBL-AS2
ECgene alternative splicing isoforms for
CLYBL-AS2

Expression for CLYBL-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CLYBL-AS2 Gene

genes like me logo Genes that share expression patterns with CLYBL-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CLYBL-AS2 Gene

Orthologs for CLYBL-AS2 Gene

Evolution for CLYBL-AS2 Gene

ENSEMBL:
Gene Tree for CLYBL-AS2 (if available)
TreeFam:
Gene Tree for CLYBL-AS2 (if available)

No data available for Orthologs for CLYBL-AS2 Gene

Paralogs for CLYBL-AS2 Gene

No data available for Paralogs for CLYBL-AS2 Gene

Variants for CLYBL-AS2 Gene

Sequence variations from dbSNP and Humsavar for CLYBL-AS2 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs10508040 -- 99,690,336(+) TGCTT(C/T)AAGAT intron-variant, nc-transcript-variant
rs112178790 -- 99,692,293(+) TTTTT(G/T)TTTTT intron-variant, upstream-variant-2KB
rs113357262 -- 99,692,297(+) TTTTT(G/T)TTGTT intron-variant, upstream-variant-2KB
rs113949110 -- 99,692,277(+) ATTTG(-/T)TTTTT intron-variant, upstream-variant-2KB
rs11428657 -- 99,689,776(+) AAGTA(-/T)TTTTT intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for CLYBL-AS2 Gene

Variant ID Type Subtype PubMed ID
nsv832696 CNV gain 17160897
esv2747875 CNV deletion 23290073

Relevant External Links for CLYBL-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CLYBL-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CLYBL-AS2 Gene

Disorders for CLYBL-AS2 Gene

Relevant External Links for CLYBL-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CLYBL-AS2

No disorders were found for CLYBL-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CLYBL-AS2 Gene

Publications for CLYBL-AS2 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for CLYBL-AS2 Gene

Sources for CLYBL-AS2 Gene

Content
Loading form....