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Aliases for CLUHP3 Gene

Aliases for CLUHP3 Gene

  • Clustered Mitochondria Homolog Pseudogene 3 2 3 5
  • Clustered Mitochondria (CluA/CLU1) Homolog Pseudogene 3 2 3 4
  • KIAA0664-Like 3 2 3
  • KIAA0664L3 3 4
  • C16orf67 3 4
  • Chromosome 16 Open Reading Frame 67 2
  • Up-Regulated In Lung Cancer 3 3
  • KIAA0664-Like Protein 3 4
  • KIAA0664 Pseudogene 3 2
  • KIAA0664P3 3
  • URLC3 3

External Ids for CLUHP3 Gene

Previous HGNC Symbols for CLUHP3 Gene

  • C16orf67
  • KIAA0664P3
  • KIAA0664L3

Summaries for CLUHP3 Gene

GeneCards Summary for CLUHP3 Gene

CLUHP3 (Clustered Mitochondria Homolog Pseudogene 3) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CLUHP3 Gene

Genomics for CLUHP3 Gene

Regulatory Elements for CLUHP3 Gene

Enhancers for CLUHP3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16G031699 1.1 ENCODE 26 +0.5 474 2.2 HDGF FOXA2 PKNOX1 CREB3L1 AGO1 ZFP64 WRNIP1 ARID4B SIN3A FEZF1 ENSG00000260304 CLUHP3 ENSG00000260267 ENSG00000276867
GH16G031712 1.1 ENCODE 24.7 +13.7 13650 3.3 PKNOX1 AGO1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 ZNF207 CLUHP3 ENSG00000260267 ENSG00000261614 ZNF720 GC16M031728
GH16G031695 0.9 Ensembl ENCODE 25.7 -4.8 -4810 1.0 LEF1 PKNOX1 L3MBTL2 ETV1 MAX REST RAD51 PRDM10 MGA SPI1 CLUHP3 ENSG00000260472 RBM22P12
GH16G031063 1.6 Ensembl ENCODE dbSUPER 10.1 -635.5 -635540 3.8 HDGF PKNOX1 CREB3L1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 KAT8 ENSG00000260911 ZNF720 NPIPB13 HSD3B7 STX1B CLUHP3 ZNF785 PIR62408 PIR50865
GH16G031873 1.8 FANTOM5 ENCODE dbSUPER 8.7 +175.7 175697 6.5 HDGF PKNOX1 ZFP64 WRNIP1 ARID4B SIN3A DMAP1 YBX1 YY1 CBX5 ZNF267 ARMC5 CLUHP3 PIR46248 GC16M031894
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CLUHP3 on UCSC Golden Path with GeneCards custom track

Promoters for CLUHP3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000085367 211 1200 HDGF PKNOX1 FOXA2 CREB3L1 ZFP64 WRNIP1 ARID4B SIN3A FEZF1 DMAP1

Genomic Location for CLUHP3 Gene

Chromosome:
16
Start:
31,700,590 bp from pter
End:
31,711,986 bp from pter
Size:
11,397 bases
Orientation:
Plus strand

Genomic View for CLUHP3 Gene

Genes around CLUHP3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CLUHP3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CLUHP3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CLUHP3 Gene

Proteins for CLUHP3 Gene

  • Protein details for CLUHP3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96NS8-CLUP3_HUMAN
    Recommended name:
    Putative protein CLUHP3
    Protein Accession:
    Q96NS8
    Secondary Accessions:
    • Q9BW88

    Protein attributes for CLUHP3 Gene

    Size:
    147 amino acids
    Molecular mass:
    16687 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CLUHP3 Gene

Post-translational modifications for CLUHP3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CLUHP3 Gene

Domains & Families for CLUHP3 Gene

Protein Domains for CLUHP3 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for CLUHP3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CLUHP3: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CLUHP3 Gene

Function for CLUHP3 Gene

genes like me logo Genes that share phenotypes with CLUHP3: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CLUHP3 Gene

Localization for CLUHP3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CLUHP3 Gene

Pathways & Interactions for CLUHP3 Gene

SuperPathways for CLUHP3 Gene

No Data Available

Interacting Proteins for CLUHP3 Gene

Gene Ontology (GO) - Biological Process for CLUHP3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CLUHP3 Gene

Drugs & Compounds for CLUHP3 Gene

No Compound Related Data Available

Transcripts for CLUHP3 Gene

mRNA/cDNA for CLUHP3 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CLUHP3 Gene

Clustered mitochondria (cluA/CLU1) homolog pseudogene 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CLUHP3 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9a · 9b · 9c ^ 10
SP1: -
SP2:
SP3: - -
SP4: -
SP5: -
SP6: - -
SP7:
SP8: - -

Relevant External Links for CLUHP3 Gene

GeneLoc Exon Structure for
CLUHP3
ECgene alternative splicing isoforms for
CLUHP3

Expression for CLUHP3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CLUHP3 Gene

NURSA nuclear receptor signaling pathways regulating expression of CLUHP3 Gene:

CLUHP3

SOURCE GeneReport for Unigene cluster for CLUHP3 Gene:

Hs.715792
genes like me logo Genes that share expression patterns with CLUHP3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CLUHP3 Gene

Orthologs for CLUHP3 Gene

Evolution for CLUHP3 Gene

ENSEMBL:
Gene Tree for CLUHP3 (if available)
TreeFam:
Gene Tree for CLUHP3 (if available)

No data available for Orthologs for CLUHP3 Gene

Paralogs for CLUHP3 Gene

No data available for Paralogs for CLUHP3 Gene

Variants for CLUHP3 Gene

Sequence variations from dbSNP and Humsavar for CLUHP3 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000216673 -- 31,703,853(+) GGAGC(A/G)CCCCT intron-variant
rs1000314989 -- 31,704,551(+) TCTCT(A/C)ACTTC intron-variant
rs1000610233 -- 31,705,236(+) CTAAA(G/T)TTGAA intron-variant
rs1001001381 -- 31,698,850(+) CCCTT(C/T)GGAAT upstream-variant-2KB
rs1001033630 -- 31,706,100(+) TCCAG(C/T)CTGTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CLUHP3 Gene

Variant ID Type Subtype PubMed ID
esv2658959 CNV deletion 23128226
esv2714195 CNV deletion 23290073
esv3570465 CNV gain 25503493
nsv1057598 CNV gain 25217958
nsv833195 CNV loss 17160897
nsv953806 CNV deletion 24416366

Relevant External Links for CLUHP3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CLUHP3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CLUHP3 Gene

Disorders for CLUHP3 Gene

Relevant External Links for CLUHP3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CLUHP3

No disorders were found for CLUHP3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CLUHP3 Gene

Publications for CLUHP3 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  4. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 4 64
  5. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3 64

Products for CLUHP3 Gene

Sources for CLUHP3 Gene

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