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Aliases for CLUAP1 Gene

Aliases for CLUAP1 Gene

  • Clusterin Associated Protein 1 2 3
  • Cilia And Flagella Associated Protein 22 2 3
  • Qilin 3 4
  • Flagellar Associated Protein 22, Qilin-Like Protein, Homolog 3
  • Flagellar Associated Protein 22 2
  • Clusterin-Associated Protein 1 3
  • Homolog (Chlamydomonas) 2
  • Qilin-Like Protein 2
  • KIAA0643 4
  • CFAP22 3
  • FAP22 3

External Ids for CLUAP1 Gene

Previous GeneCards Identifiers for CLUAP1 Gene

  • GC16P003491
  • GC16P003550
  • GC16P003520

Summaries for CLUAP1 Gene

Entrez Gene Summary for CLUAP1 Gene

  • The protein encoded by this gene contains a single coiled-coil region. Alternative splicing results in multiple transcript variants and protein isoforms. [provided by RefSeq, Jul 2012]

GeneCards Summary for CLUAP1 Gene

CLUAP1 (Clusterin Associated Protein 1) is a Protein Coding gene.

UniProtKB/Swiss-Prot for CLUAP1 Gene

  • Required for cilia biogenesis. Appears to function within the multiple intraflagellar transport complex B (IFT-B). Key regulator of hedgehog signaling (By similarity).

Gene Wiki entry for CLUAP1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CLUAP1 Gene

Genomics for CLUAP1 Gene

Regulatory Elements for CLUAP1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for CLUAP1 Gene

Start:
3,500,924 bp from pter
End:
3,539,048 bp from pter
Size:
38,125 bases
Orientation:
Plus strand

Genomic View for CLUAP1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CLUAP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CLUAP1 Gene

Proteins for CLUAP1 Gene

  • Protein details for CLUAP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96AJ1-CLUA1_HUMAN
    Recommended name:
    Clusterin-associated protein 1
    Protein Accession:
    Q96AJ1
    Secondary Accessions:
    • O75138
    • Q65ZA3
    • Q9H8R4
    • Q9H8T1

    Protein attributes for CLUAP1 Gene

    Size:
    413 amino acids
    Molecular mass:
    48125 Da
    Quaternary structure:
    • Interacts with CLU/clusterin.
    Miscellaneous:
    • Associated with a number of cancers such as colon (PubMed:15480429) and bone cancer (PubMed:17203229). Possibly involved in polycystic kidney diseases (PubMed:15530380).
    SequenceCaution:
    • Sequence=BAA31618.1; Type=Miscellaneous discrepancy; Note=Intron retention.; Evidence={ECO:0000305}; Sequence=BAB14523.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Alternative splice isoforms for CLUAP1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CLUAP1 Gene

Proteomics data for CLUAP1 Gene at MOPED

Post-translational modifications for CLUAP1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for CLUAP1 Gene

Domains for CLUAP1 Gene

Gene Families for CLUAP1 Gene

HGNC:
  • IFT :Intraflagellar transport homologs

Protein Domains for CLUAP1 Gene

Suggested Antigen Peptide Sequences for CLUAP1 Gene

Graphical View of Domain Structure for InterPro Entry

Q96AJ1

UniProtKB/Swiss-Prot:

CLUA1_HUMAN :
  • Q96AJ1
Family:
  • Belongs to the CLUAP1 family.
genes like me logo Genes that share domains with CLUAP1: view

Function for CLUAP1 Gene

Molecular function for CLUAP1 Gene

UniProtKB/Swiss-Prot Function: Required for cilia biogenesis. Appears to function within the multiple intraflagellar transport complex B (IFT-B). Key regulator of hedgehog signaling (By similarity).

Gene Ontology (GO) - Molecular Function for CLUAP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 16189514
genes like me logo Genes that share ontologies with CLUAP1: view
genes like me logo Genes that share phenotypes with CLUAP1: view

Animal Models for CLUAP1 Gene

MGI Knock Outs for CLUAP1:

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CLUAP1

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targeting and HOMER Transcription for CLUAP1 Gene

Localization for CLUAP1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CLUAP1 Gene

Nucleus. Cell projection, cilium.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CLUAP1 Gene COMPARTMENTS Subcellular localization image for CLUAP1 gene
Compartment Confidence
nucleus 5
cytosol 2
mitochondrion 1

Gene Ontology (GO) - Cellular Components for CLUAP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus --
GO:0005654 nucleoplasm IDA --
GO:0005813 centrosome IBA --
GO:0005929 cilium IBA --
GO:0030992 intraciliary transport particle B IBA --
genes like me logo Genes that share ontologies with CLUAP1: view

Pathways for CLUAP1 Gene

SuperPathways for CLUAP1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CLUAP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006996 organelle organization TAS --
GO:0042384 cilium assembly IBA --
genes like me logo Genes that share ontologies with CLUAP1: view

No data available for Pathways by source for CLUAP1 Gene

Transcripts for CLUAP1 Gene

Unigene Clusters for CLUAP1 Gene

Clusterin associated protein 1:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CLUAP1

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CLUAP1 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b · 7c ^ 8a · 8b ^ 9a · 9b ^ 10 ^ 11 ^ 12 ^ 13a · 13b ^ 14a · 14b
SP1: - - - -
SP2: - -
SP3: -
SP4: - - -
SP5: - - -
SP6:
SP7:

Relevant External Links for CLUAP1 Gene

GeneLoc Exon Structure for
CLUAP1
ECgene alternative splicing isoforms for
CLUAP1

Expression for CLUAP1 Gene

mRNA expression in normal human tissues for CLUAP1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for CLUAP1 Gene

SOURCE GeneReport for Unigene cluster for CLUAP1 Gene Hs.155995

mRNA Expression by UniProt/SwissProt for CLUAP1 Gene

Q96AJ1-CLUA1_HUMAN
Tissue specificity: Expressed in testis, thyroid and trachea and to a lower extent in spinal cord and adrenal gland. Highly expressed in colon cancer and osteosarcoma cell lines.
genes like me logo Genes that share expressions with CLUAP1: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues for CLUAP1 Gene

Orthologs for CLUAP1 Gene

This gene was present in the common ancestor of animals.

Orthologs for CLUAP1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CLUAP1 35
  • 99.68 (n)
  • 99.52 (a)
CLUAP1 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CLUAP1 35
  • 84.67 (n)
  • 84.26 (a)
CLUAP1 36
  • 84 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CLUAP1 35
  • 89.16 (n)
  • 90.29 (a)
CLUAP1 36
  • 86 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Cluap1 35
  • 86.76 (n)
  • 89.83 (a)
Cluap1 16
Cluap1 36
  • 90 (a)
OneToMany
Gm20695 36
  • 57 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia CLUAP1 36
  • 91 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CLUAP1 36
  • 77 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Cluap1 35
  • 86.4 (n)
  • 90.3 (a)
chicken
(Gallus gallus)
Aves CLUAP1 35
  • 74.66 (n)
  • 74.09 (a)
CLUAP1 36
  • 73 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 80 (a)
OneToMany
-- 36
  • 63 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia cluap1 35
  • 69.57 (n)
  • 71.91 (a)
zebrafish
(Danio rerio)
Actinopterygii cluap1 35
  • 65.21 (n)
  • 65.62 (a)
cluap1 36
  • 64 (a)
OneToOne
Dr.5944 35
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP000246 35
  • 47.32 (n)
  • 39.78 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG17599 35
  • 45.47 (n)
  • 32.84 (a)
CG17599 36
  • 24 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea dyf-3 35
  • 51.37 (n)
  • 43.53 (a)
dyf-3 36
  • 37 (a)
OneToOne
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.514 35
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 50 (a)
OneToOne
Species with no ortholog for CLUAP1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for CLUAP1 Gene

ENSEMBL:
Gene Tree for CLUAP1 (if available)
TreeFam:
Gene Tree for CLUAP1 (if available)

Paralogs for CLUAP1 Gene

No data available for Paralogs for CLUAP1 Gene

Variants for CLUAP1 Gene

Sequence variations from dbSNP and Humsavar for CLUAP1 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs9790 - 3,536,230(+) GGGTC(C/T)GGAAA reference, missense
rs1034735 -- 3,534,140(-) GAAGC(A/G)GGGGC intron-variant
rs1548525 -- 3,533,833(-) AAGAC(A/G)GAGAG intron-variant
rs1548526 -- 3,533,682(-) TGTGT(A/G)GGCCG intron-variant
rs1859249 -- 3,513,566(-) AGGCT(C/G)AGGAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CLUAP1 Gene

Variant ID Type Subtype PubMed ID
nsv905213 CNV Loss 21882294
nsv905214 CNV Loss 21882294
nsv1716 CNV Insertion 18451855
nsv833128 CNV Loss 17160897

Relevant External Links for CLUAP1 Gene

HapMap Linkage Disequilibrium report
CLUAP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CLUAP1 Gene

Disorders for CLUAP1 Gene

No disorders were found for CLUAP1 Gene.

No data available for UniProtKB/Swiss-Prot for CLUAP1 Gene

Publications for CLUAP1 Gene

  1. Prediction of the coding sequences of unidentified human genes. X. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro. (PMID: 9734811) Ishikawa K. … Ohara O. (DNA Res. 1998) 2 3 4
  2. Isolation and characterization of a novel gene CLUAP1 whose expression is frequently upregulated in colon cancer. (PMID: 15480429) Takahashi M. … Furukawa Y. (Oncogene 2004) 2 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  5. Identification of CLUAP1 as a human osteosarcoma tumor-associated antigen recognized by the humoral immune system. (PMID: 17203229) Ishikura H. … Nishimura T. (Int. J. Oncol. 2007) 3 4

Products for CLUAP1 Gene

Sources for CLUAP1 Gene

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