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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

CLUAP1 Gene

protein-coding   GIFtS: 47
GCID: GC16P003520

clusterin associated protein 1
 Explore 4 diseases affiliated with
CLUAP1 via
MalaCards
our new
 Human Malady Compendium 
Biological research products
for CLUAP1    

Aliases
for CLUAP1 gene

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section
Aliases
Clusterin Associated Protein 11 2
FAP221 2
KIAA06431 3
FLJ132971
Clusterin-Associated Protein 12
Flagellar Associated Protein 22, Qilin-Like Protein, Homolog2

External Ids:    HGNC: 190091   Entrez Gene: 230592   Ensembl: ENSG000001033517   UniProtKB: Q96AJ13   

Export aliases for CLUAP1 gene to outside databases

Previous GC identifers: GC16P003491 GC16P003550


Summaries
for CLUAP1 gene

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section
Entrez Gene summary for CLUAP1:
The protein encoded by this gene contains a single coiled-coil region. Alternative splicing results in multiple
transcript variants and protein isoforms. (provided by RefSeq, Jul 2012)

UniProtKB/Swiss-Prot: CLUA1_HUMAN, Q96AJ1
Function: May play a role in cell proliferation or apoptosis

Gene Wiki entry for CLUAP1


Genomic Views
for CLUAP1 gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000016.9  NC_018927.1  NT_010393.16  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the CLUAP1 gene promoter:
         Elk-1   PPAR-gamma1   FAC1   LUN-1   PPAR-gamma2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: CLUAP1 promoter sequence
   Search SABiosciences Chromatin IP Primers for CLUAP1

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CLUAP1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 16p13.3   Ensembl cytogenetic band:  16p13.3   HGNC cytogenetic band: 16p13.3

CLUAP1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CLUAP1 gene location

GeneLoc information about chromosome 16         GeneLoc Exon Structure

GeneLoc location for GC16P003520:  view genomic region     (about GC identifiers)

Start:
 3,550,924 bp from pter      End:
 3,589,048 bp from pter
Size:
 38,125 bases      Orientation:
 plus strand

Proteins
for CLUAP1 gene

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section
UniProtKB/Swiss-Prot: CLUA1_HUMAN, Q96AJ1 (See protein sequence)
Recommended Name: Clusterin-associated protein 1  
Size: 413 amino acids; 48125 Da
Subunit: Interacts with CLU/clusterin
Subcellular location: Nucleus
Sequence caution: Sequence=BAA31618.1; Type=Miscellaneous discrepancy; Note=Intron retention; Sequence=BAB14523.1;
Type=Erroneous initiation;
Secondary accessions: O75138 Q65ZA3 Q9H8R4 Q9H8T1
Alternative splicing: 2 isoforms:  Q96AJ1-1   Q96AJ1-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for CLUAP1: NX_Q96AJ1

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q96AJ1

    • CLUAP1 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (2 alternative transcripts): 
    NP_055856.1  NP_079069.1  

    ENSEMBL proteins: 
     ENSP00000460850   ENSP00000460977   ENSP00000458886   ENSP00000459602   ENSP00000459399  
     ENSP00000344392   ENSP00000460706   ENSP00000461063   ENSP00000460889   ENSP00000458513  
     ENSP00000458180   ENSP00000388642   ENSP00000397710  

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    Uscn Proteins for CLUAP1

    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IEA--


    CLUAP1 for ontologies           About GeneDecksing



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    Protein Domains /
    Families
    for CLUAP1 gene

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    CLUAP1 for domains           About GeneDecksing

    1 InterPro domain/family:
     IPR019366 Clusterin-associated_protein-1

    Graphical View of Domain Structure for InterPro Entry Q96AJ1

    ProtoNet protein and cluster: Q96AJ1

    1 Blocks protein family: IPB001715 Calponin-like actin-binding


    Function
    for CLUAP1 gene

    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section
    Function Summary:

         UniProtKB/Swiss-Prot: CLUA1_HUMAN, Q96AJ1
    Function: May play a role in cell proliferation or apoptosis

    miRNA
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    Inhib. RNA
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    Gene Editing
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    Clone
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    In Situ Assay
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    Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding IPI16189514


    CLUAP1 for ontologies           About GeneDecksing


    Animal Models:
         3 MGI mutant phenotypes (inferred from 1 allele) (MGI details for Cluap1):
     immune system  mortality/aging  skeleton 

    CLUAP1 for phenotypes           About GeneDecksing


    Pathways & Interactions
    for CLUAP1 gene

    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CLUAP1

    STRING Interaction Network Preview (showing 5 interactants - click image to see 8)

    5/17 Interacting proteins for CLUAP1 (Q96AJ11, 3 ENSP000003443924) via UniProtKB, MINT, STRING, and/or I2D (see all 17)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    MAGEA11P433641, 3, ENSP000003473584EBI-739780,EBI-739552 I2D: score=5 STRING: ENSP00000347358
    CINPQ9BW663, ENSP000002167564I2D: score=4 STRING: ENSP00000216756
    CLUP109093, ENSP000003151304I2D: score=1 STRING: ENSP00000315130
    EIF3KQ9UBQ53, ENSP000002483424I2D: score=2 STRING: ENSP00000248342
    BBS7Q8IWZ63, ENSP000002644994I2D: score=2 STRING: ENSP00000264499
    About this table

    Drugs & Compounds
    for CLUAP1 gene

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for CLUAP1
    Search CenterWatch for drugs/clinical trials and news about CLUAP1 / CLUA1 

    Transcripts
    for CLUAP1 gene

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section
    REFSEQ mRNAs for CLUAP1 gene (2 alternative transcripts): 
    NM_015041.2  NM_024793.2  

    Unigene Cluster for CLUAP1:

    Clusterin associated protein 1
    Hs.155995  [show with all ESTs]
    Unigene Representative Sequence: NM_015041
    14 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000576634(uc002cvk.1) ENST00000573370 ENST00000574369 ENST00000574592
    ENST00000575134 ENST00000341633 ENST00000571025(uc002cvj.1) ENST00000576117
    ENST00000572600(uc002cvm.1 uc021tcg.1) ENST00000574551 ENST00000572632
    ENST00000575323 ENST00000417763 ENST00000445795

    miRNA
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    2 QIAGEN miScript miRNA Assays for microRNAs that regulate CLUAP1:
    hsa-miR-623 hsa-miR-29a*
    SwitchGear 3'UTR luciferase reporter plasmid: CLUAP1 3' UTR sequence
    Inhib. RNA
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    Clone
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    Additional cDNA sequence: 

    AB089691.1 AK023319.1 AK023359.1 AK294318.1 BC017070.2 

    16 DOTS entries:

    DT.95370653  DT.95370645  DT.445940  DT.100813566  DT.92414904  DT.121643604  DT.120703761  DT.99976554 
    DT.95370646  DT.120703744  DT.120703708  DT.92429385  DT.120703729  DT.120703750  DT.95370651  DT.100656497 

    24/141 AceView cDNA sequences (see all 141):

    AI435988 AA632321 CB265602 AU133882 CB145778 CA414767 BM665517 BM664569 
    BF916483 BU728677 NM_015041 CB241931 AL537070 BM930318 AB014543 BG832211 
    CA440342 AI274831 BM981372 AW023312 AB089691 BI828547 CA313124 AK023319 

    GeneLoc Exon Structure

    5/7 Alternative Splicing Database (ASD) splice patterns (SP) for CLUAP1 (see all 7)    About this scheme

    ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b · 7c ^ 8a · 8b ^ 9a · 9b ^ 10 ^ 11 ^ 12 ^ 13a · 13b ^ 14a · 14b
    SP1:                          -                             -                                                           -     -               
    SP2:                          -                             -                                                                                 
    SP3:                                                                                                                          -               
    SP4:                          -     -                       -                                                                                 
    SP5:                          -           -                 -                                                                                 


    ECgene alternative splicing isoforms for CLUAP1

    Expression
    for CLUAP1 gene

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    CLUAP1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: --

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)
    About this image

    CLUAP1 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    Stem Cell Differentiation: 1 LifeMap Cell 
    NameCategory
    Endoderm-like cells (Generation of hepato...)
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See CLUAP1 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for CLUAP1

    SOURCE GeneReport for Unigene cluster: Hs.155995

    UniProtKB/Swiss-Prot: CLUA1_HUMAN, Q96AJ1
    Tissue specificity: Expressed in testis, thyroid and trachea and to a lower extent in spinal cord and adrenal gland

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    In Situ
    Assay Products:     
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    Orthologs
    for CLUAP1 gene

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section
    This gene was present in the common ancestor of animals.

    Orthologs for CLUAP1 gene from 6/23 species (see all 23)    About this table
    Organism Taxonomic
    classification    		 Gene Description Human
    Similarity    		 Orthology
    Type    		 Details
    mouse
    (Mus musculus)    		 Mammalia Cluap11 , 5 clusterin associated protein 11, 5 86.76(n)1
    89.83(a)1    		   16 (2.30 cM)5
    767791  NM_029738.21  NP_084014.11 
     39088015 
    chicken
    (Gallus gallus)    		 Aves CLUAP11 clusterin associated protein 1 74.82(n)
    74.03(a)    		   426077  XM_423754.3  XP_423754.3 
    lizard
    (Anolis carolinensis)    		 Reptilia --
    		 --
    		 80(a)
    		 1 ↔ 1
    		 GL343518.1(347738-387476)
    zebrafish
    (Danio rerio)    		 Actinopterygii Dr.59442 Danio rerio cDNA clone MGC56115 IMAGE5411447, complete more 71.68(n)    BC045921.1 
    fruit fly
    (Drosophila melanogaster)    		 Insecta CG175991 CG17599 44.64(n)
    31.56(a)    		   33142  NM_134626.1  NP_608470.1 
    worm
    (Caenorhabditis elegans)    		 Secernentea dyf-31 Protein DYF-3 50.35(n)
    41.76(a)    		   177107  NM_001026124.1  NP_001021295.1 


    ENSEMBL Gene Tree for CLUAP1 (if available)
    TreeFam Gene Tree for CLUAP1 (if available) 

    Paralogs
    for CLUAP1 gene

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    		  --

    Genomic Variants
    for CLUAP1 gene

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/838 NCBI SNPs in CLUAP1 are shown (see all 838)     About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance    		Chr 16 posSequence#AA
    Chg    		TypeMore#Allele
    freq    		PopTotal
    sample    		More
    ----------
    rs133343361,2
    		C,F,H,--3548967(+) ggtctC/Tatagg 1 -- us2k110Minor allele frequency- T:0.03NS EA NA WA 748
    rs746170361,2
    		F,--3549021(+) TTCAAC/TCCAAT 1 -- us2k11Minor allele frequency- T:0.03WA 118
    rs799149051,2
    		F,--3549065(+) TTCCAA/GTGGAA 1 -- us2k12Minor allele frequency- G:0.04NA EA 240
    rs1862280981,2
    		--3549093(+) AAACAC/TGTAAA 1 -- us2k10--------
    rs1919002811,2
    		--3549234(+) CAGCTA/CCTCCG 1 -- us2k10--------
    rs571893601,2
    		--3549244(+) GGAGGC/GTGAGG 1 -- us2k10--------
    rs71879261,2
    		C,--3549274(+) ctggaA/Ggcgga 1 -- us2k10--------
    rs606241551,2
    		F,--3549452(+) TTTAAC/TGTGTT 1 -- us2k11Minor allele frequency- T:0.07WA 118
    rs1833614581,2
    		--3549565(+) TTAGCC/GATCCA 1 -- us2k10--------
    rs1857345431,2
    		--3549615(+) CCATTC/GTCTAA 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for CLUAP1 (3550924 - 3589048 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for CLUAP1: --

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing CLUAP1
    DNA2.0 Custom Variant and Variant Library Synthesis for CLUAP1

    Disorders / Diseases
    for CLUAP1 gene

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    CLUAP1 for disorders           About GeneDecksing

    4 diseases for CLUAP1:    About MalaCards
    colon cancer    osteosarcoma    thyroiditis    neuronitis


    Export disorders for CLUAP1 gene to outside databases

    Publications
    for CLUAP1 gene

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for CLUAP1 gene, integrated from 9 sources (see all 15):
    (articles sorted by number of sources associating them with CLUAP1)    		    Utopia: connect your pdf to the dynamic
    world of online information

    1. Isolation and characterization of a novel gene CLUAP1 whose expression is frequently upregulated in colon cancer. (PubMed id 15480429)1, 2, 3 Takahashi M.... Furukawa Y. (2004)
    2. Prediction of the coding sequences of unidentified human genes. X. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro. (PubMed id 9734811)1, 2, 3 Ishikawa K.... Ohara O. (1998)
    3. Characterization of mouse IFT complex B. (PubMed id 19253336)1, 3 Follit J.A....Pazour G.J. (2009)
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    6. Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (2011)
    7. Activity-based chemical proteomics accelerates inhibi tor development for deubiquitylating enzymes. (PubMed id 22118674)1 Altun M....Kessler B.M. (2011)
    8. Interactions of pathological hallmark proteins: tubul in polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PubMed id 21832049)1 OlA!h J....OvA!di J. (2011)
    9. Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions. (PubMed id 19690332)2 Mayya V.... Han D.K. (2009)
    10. Ubiquitin-mediated proteolysis of HuR by heat shock. (PubMed id 19322201)1 Abdelmohsen K....Gorospe M. (2009)

    External Searches for CLUAP1 gene

    (in PubMed, OMIM, and NCBI Bookshelf)
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    Genome Databases showing CLUAP1 gene

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 23059 HGNC: 19009 AceView: CLUAP1 Ensembl:ENSG00000103351 euGenes: HUgn23059
    ECgene: CLUAP1 H-InvDB: CLUAP1

    Other Databases showing CLUAP1 gene

    (According to HUGE)
    About This Section
    HUGE: KIAA0643

    Specialized Databases showing CLUAP1 gene

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for CLUAP1 Pharmacogenomics, SNPs, Pathways

    Intellectual Property
    for CLUAP1 gene

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    		Patent Information for CLUAP1 gene:
    Search GeneIP for patents involving CLUAP1

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