CLU Gene
protein-coding GIFtS : 65
GC08M027510
clusterin (Previous names: clusterin (complement lysis inhibitor, SP-40,40, sulfated glycoprotein 2, testosterone-repressed prostate message 2, apolipoprotein J) )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbols: CLI, APOJ )
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Aliases & Descriptions for CLU
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases AAG4 2 APOJ 2 , 3 Apo-J 3 CLI 2 , 3 , 5 KUB1 1 , 2 , 3 MGC24903 2 NA1/NA2 3 OTTHUMP00000128311 2 SGP-2 1 , 2 SGP2 2 , 5 SP-40 1 , 2 TRPM-2 1 , 2 , 3 TRPM2 2 , 5 clusterin 2
Descriptions Aging-associated gene 4 protein 3 Apolipoprotein J 2 , 3 Complement cytolysis inhibitor 3 Complement-associated protein SP-40,40 3 Ku70-binding protein 1 3 Testosterone-repressed prostate message 2 2 , 3 aging-associated protein 4 2 clusterin (complement lysis inhibitor, SP-40,40, sulfated glycoprotein 2, testosterone-repressed prostate message 2, apolipoprotein J) 1 , 2 complement lysis inhibitor 2 complement-associated protein SP-40 2 sulfated glycoprotein 2 2
Search outside databases for aliases for CLU genePrevious GC identifers: GC08M027237 GC08M027960 GC08M027477 GC08M027462
Summaries for CLU (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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UniProtKB/Swiss-Prot: CLUS_HUMAN, P10909 Function : Not yet clear. It is known to be expressed in a variety of tissues and it seems to beable to bind to cells, membranes and hydrophobic proteins. It has been associated with programmedcell death (apoptosis)
Genomic Location for CLU
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the CLU gene Entrez Gene cytogenetic band: 8p21-p12 Ensembl cytogenetic band: 8p21.1 HGNC cytogenetic band: 8p21-p12 CLU Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 8 GeneLoc Exon Structure
GeneLoc location for GC08M027510:
(about GC identifiers )
Start:
27,491,966 bp from pter
End:
27,528,244 bp from pter
Size:
36,279 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000008.9 NT_023666.17 Proteins for CLU
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: CLUS_HUMAN, P10909 (See
protein sequence )Recommended Name: Clusterin precursor Size : 449 amino acids; 52495 Da
Subunit : Antiparallel disulfide-linked heterodimer. Interacts with APOA1, CLUAP1 AND PON1
Subcellular location : Secreted
Secondary accessions : B2R9Q1 P11380 P11381 Q2TU75 Q5HYC1 Q7Z5B9
REFSEQ proteins (2 alternative transcripts):
NP_001822.2 NP_976084.1 ENSEMBL proteins: ENSP00000315130 ENSP00000369812 ENSP00000385419 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: CLU 4 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for CLU: Assays for CLU:
Protein
Domains/ Families for CLU(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P10909 ProtoNet protein and cluster: P10909
1 Blocks protein family : IPB000753 Clusterin UniProtKB/Swiss-Prot: CLUS_HUMAN, P10909 Similarity : Belongs to the clusterin family
Gene Function for CLU
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Inhib. RNA: Invitrogen RNAi Products for gene knock-down (CLU ) Millipore RNAi Products for the Analysis of CLU Gene knock-down Abnova Chimera RNAi Products for Gene knock-down (CLU )
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001831 Applied Biosystems Silencer ® siRNAs for CLU Sigma-Aldrich siRNA for CLU Sigma-Aldrich shRNA for CLU Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001831                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001831                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001831  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001831 UniProtKB/Swiss-Prot: CLUS_HUMAN, P10909 Function : Not yet clear. It is known to be expressed in a variety of tissues and it seems to beable to bind to cells, membranes and hydrophobic proteins. It has been associated with programmedcell death (apoptosis)
Genatlas biochemistry entry for CLU :clusterin,sulfated multifunctional glycoprotein 2,cell cycle dependent expressed in normal dermalfibroblasts,major secreted product of Sertoli cells,potentially involved inspermatogenesis,increased in hippocampus and in frontal cortex in Alzheimer's disease. Recentlyrecognized as an autoantigen (70kDa) identified in the serum of patients withscleroderma-polymyositis syndrome,dimerizing with KUP80 to form an ATP dependent DNA unwindingenzyme (helicase II) and the regulatory component of a DNA dependent protein kinase(PRKDC),involved in DNA double-strand break repair by end joining (non homologous recombination)and V(D)J recombination
6 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Clu) :1 Gene Ontology (GO) molecular function term (links to tree view) :
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Pathways & Interactions for CLU
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for CLU 5/53 Interacting proteins for CLU (ENSP00000369812 3 P10909 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 53
)About this table 5/11 Gene Ontology (GO) biological process terms (links to tree view) (see all 11
):
About this table
Drugs & Compounds for CLU (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for CLU 10/42 Novoseek chemical compound relationships for CLU gene (see all 42
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
[alcl]
60.40
25
10887098 (5), 19220628 (4), 19289586 (3), 12428799 (2)
oligonucleotide
40.97
22
19157446 (2), 16145049 (2), 7757997 (1), 18078515 (1) (see all 11 )
phosphorothioate
33.55
2
18245546 (1), 16145049 (1)
1,25 dihydroxy vitamin d3
33.06
7
16886681 (2), 9528999 (1), 16179938 (1)
lipid
29.51
39
1746550 (4), 1431576 (3), 15457546 (2), 11281639 (2) (see all 22 )
dutp
27.19
3
15668890 (1), 19155441 (1)
propidium
26.04
1
15994859 (1)
cholesterol
18.88
13
10514484 (2), 7548231 (1), 1547735 (1), 9558731 (1) (see all 10 )
digitonin
10.34
3
17451556 (1), 16038898 (1)
sialic acid
9.27
15
14984241 (2), 10235309 (2), 11839462 (2), 17852805 (1)
About this table 1 PharmGKB drug compound relationship for CLU gene
Drug compound
PharmGKB Relations
PubMed IDs for articles supporting these relationships
gemcitabine FA  15126879
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Transcripts for CLU(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
OriGene , Expression Assays from Applied Biosystems )About This Section
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Inhib. RNA: Invitrogen RNAi Products for gene knock-down (CLU ) Millipore RNAi Products for the Analysis of CLU Gene knock-down Abnova Chimera RNAi Products for Gene knock-down (CLU )
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001831 Sigma-Aldrich siRNA for CLU Sigma-Aldrich shRNA for CLU Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001831 NM_203339
REFSEQ mRNAs for CLU gene (2 alternative transcripts): NM_001831.2 NM_203339.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001831 NM_203339
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001831                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001831                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001831  
Additional cDNA sequence: AK093399.1 AK301324.1 AK313870.1 AY513288.1 BC010514.1 BC013221.1 BC019588.2 BC029972.1 CR589989.1 CR591047.1 CR591650.1 CR591665.1 CR591897.1 CR592219.1 CR592779.1 CR592811.1 CR593262.1 CR593810.1 CR594019.1 CR594036.1 CR594231.1 CR594276.1 CR594739.1 CR595225.1 CR595338.1 CR596994.1 CR597230.1 CR597462.1 CR597976.1 CR598074.1 CR598219.1 CR599454.1 CR599502.1 CR599643.1 CR599675.1 CR600109.1 CR600144.1 CR601653.1 CR602228.1 CR602800.1 CR603179.1 CR603735.1 CR604320.1 CR604582.1 CR605669.1 CR606623.1 CR606673.1 CR606818.1 CR606845.1 CR607740.1 CR607913.1 CR608066.1 CR608273.1 CR608526.1 CR609112.1 CR609937.1 CR610613.1 CR610801.1 CR611421.1 CR611535.1 CR612244.1 CR613818.1 CR615018.1 CR615768.1 CR616963.1 CR616998.1 CR617450.1 CR617497.1 CR617881.1 CR618048.1 CR619709.1 CR619820.1 CR619848.1 CR620190.1 CR620616.1 CR620651.1 CR621942.1 CR622570.1 CR623105.1 CR623634.1 CR623710.1 CR624051.1 CR624705.1 CR625885.1 J02908.1 M25915.1 M26639.1 M64722.1 M74816.1 X14723.1
24/96 DOTS entries (see all 96
): DT.91829646 DT.91829513 DT.97796082 DT.91983754 DT.91720241 DT.100889938 DT.87007676 DT.91941054 DT.92376991 DT.92047285 DT.97848139 DT.100889971 DT.95153361 DT.91829692 DT.100889976 DT.100889940 DT.92345718 DT.75101114 DT.100889937 DT.100806549 DT.100889925 DT.100889905 DT.100889920 DT.100889944
24/3200 AceView cDNA sequences (see all 3200
):BQ044937 BQ016853 T98143 BG928899 BF342924 BM696754 AA360536 CR601653 BQ180862 CD517904 H41619 BQ045029 BQ640030 BE765891 BQ639042 BU727847 BQ934007 BQ182373 BF931322 BF725140 CR598074 BU727214 BP347745 BQ183828
highest scoring ESTs for CLU :AA336628 AI982754 AL036546 AL048826 AL531994 AL532035 AL532701 AL532803 AL532900 AL533022
Unigene Cluster for CLU: Clusterin Hs.436657 [show with all ESTs ] Unigene Representative Sequence: NM_203339 GeneLoc Exon Structure 5/12 Alternative Splicing Database (ASD) splice patterns (SP) for CLU (see all 12
) ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b · 4c ^ 5a · 5b · 5c ^ 6a · 6b · 6c · 6d ^ 7a · 7b ^ 8a · 8b ^ 9a · 9b · 9c ^ 10a · 10b ^ 11 ^ 12a · 12b · SP1 :     -   -   -   -   -   -             -                       -     SP2 :             -   -             -                       -     SP3 :         -   -   -   -             -                           SP4 :                                                 -     SP5 :       -   -   -   -   -             -                          
ExUns: 12c ^ 13a · 13b · 13c · 13d · 13e SP1 :             SP2 :             SP3 :             SP4 :             SP5 :            
About this scheme ECgene alternative splicing isoforms for CLU 3 Ensembl transcripts including schematic representations : ENST00000316403
ENST00000380446
ENST00000405140
Expression for CLU
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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CLU expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for CLU 1 / 2 / 3
12 probe-sets matching CLU gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CAACTAATTCSOURCE GeneReport for Unigene cluster: Hs.436657 Expression variation in blood from EXPOLDB for CLU
Orthologs for CLU
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for CLU gene from 5/8 species (see all 8
)
About this table Species with no ortholog for CLU ENSEMBL Gene Tree for CLU Paralogs for CLU (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for CLU gene CLUL1 2
SNPs/Variants for CLU (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for CLU (up to first 250kb)
Disorders & Mutations for CLU
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 185430 10/95 Novoseek disease relationships for CLU gene (see all 95
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
prostate cancer
61.99
131
16979705 (7), 16634689 (5), 12783666 (5), 16201973 (5) (see all 49 )
senile plaques
55.42
14
1378350 (1), 15857407 (1), 10502582 (1), 7761992 (1) (see all 9 )
alzheimers disease
52.28
46
16490286 (4), 8774959 (2), 10502582 (2), 9560017 (2) (see all 24 )
anaplastic large cell lymphoma
49.98
18
12429802 (4), 15151211 (2), 12428799 (2), 19220628 (1) (see all 5 )
carbohydrate-deficient glycoprotein syndrome
49.37
1
9083771 (1)
cdg ia
49.04
1
9104884 (1)
nephropathy obstructive
48.52
1
10644902 (1)
ovarian cystadenoma
47.50
1
15578711 (1)
lymphomatoid papulosis
47.30
4
19220628 (1), 19289586 (1)
drusen
45.85
6
11846519 (1), 17148042 (1), 12391305 (1), 15180251 (1)
About this table Human Gene Mutation Database : CLU Genetic Association Database: CLU Human Genome Epidemiology Navigator: CLU (9 documents)
Medical News for CLU (Possibly Related Articles in
Doctor's Guide )
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--
Publications for CLU (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/527 PubMed articles for CLU gene (see all 527
): Apolipoprotein J: structure and tissue distribution. (PubMed id 1974459) 1, 3, 4 de Silva H.V.... Robbins J. (1990) Apolipoprotein J is associated with paraoxonase in human plasma. (PubMed id 8292612) 1, 3, 4 Kelso G.J....Harmony J.A. (1994) Insertion/deletion polymorphism in clusterin gene influences serum lipid levels and carotid intima-media thickness in hypertensive Japanese females. (PubMed id 15883054) 1, 3, 6 Miwa Y....Kawano Y. (2005) Molecular characterization of human TRPM-2/clusterin, a gene associated with sperm maturation, apoptosis and neurodegeneration. (PubMed id 8181474) 1, 3, 4 Wong P....Tenniswood M. (1994) The cerebrospinal-fluid soluble form of Alzheimer's amyloid beta is complexed to SP-40,40 (apolipoprotein J), an inhibitor of the complement membrane-attack complex. (PubMed id 8328966) 1, 3, 4 Ghiso J.... Frangione B. (1993) Human gliomas and epileptic foci express high levels of a mRNA related to rat testicular sulfated glycoprotein 2, a purported marker of cell death. (PubMed id 1924317) 1, 3, 4 Danik M.... Suh M. (1991) DNA sequence and analysis of human chromosome 8. (PubMed id 16421571) 3, 4 Nusbaum C....Lander E.S. (2006) Elucidation of N-glycosylation sites on human platelet proteins: a glycoproteomic approach. (PubMed id 16263699) 3, 4 Lewandrowski U.... Sickmann A. (2006) Identification of N-linked glycoproteins in human saliva by glycoprotein capture and mass spectrometry. (PubMed id 16740002) 3, 4 Ramachandran P....Loo J.A. (2006) Association of apolipoprotein J gene 866C-->T polymorphism with preeclampsia and essential hypertension. (PubMed id 15925890) 3, 6 Chen M....Shan K. (2005)
Search for CLU
(in PubMed ,
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Genome Databases showing CLU
(According to
Entrez Gene ,
HGNC ,
AceView ,
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H-InvDB )
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Other Databases showing CLU
(According to HUGE )
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--
Specialized Databases showing CLU (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for CLU (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for CLU:
Search Tocris compounds for CLU
Antibodies for CLU
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009