CLTC Gene
protein-coding GIFtS : 68
GC17P055052
clathrin, heavy chain (Hc) (Previous names: clathrin, heavy polypeptide (Hc), clathrin, heavy chain, clathrin, heavy polypeptide-like 2 )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbol: CLTCL2 )
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Aliases & Descriptions for CLTC
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases CHC 2 CHC17 2 CLH-17 2 , 3 CLH17 3 CLTCL2 2 , 3 Hc 1 , 2 KIAA0034 2 , 3
Descriptions clathrin heavy chain 1 2 clathrin, heavy chain 1 clathrin, heavy chain (Hc) 2 clathrin, heavy polypeptide (Hc) 1 , 2 clathrin, heavy polypeptide-like 2 1 , 2
Search outside databases for aliases for CLTC genePrevious GC identifers: GC17P057433 GC17P060146 GC17P058039 GC17P058171
Summaries for CLTC (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for CLTC : Clathrin is a major protein component of the cytoplasmic face of intracellular organelles, calledcoated vesicles and coated pits. These specialized organelles are involved in the intracellulartrafficking of receptors and endocytosis of a variety of macromolecules. The basic subunit of theclathrin coat is composed of three heavy chains and three light chains. [provided by RefSeq] UniProtKB/Swiss-Prot: CLH1_HUMAN, Q00610 Function : Clathrin is the major protein of the polyhedral coat of coated pits and vesicles. Twodifferent adapter protein complexes link the clathrin lattice either to the plasma membrane or tothe trans-Golgi network
Gene Wiki entry for CLTC
Genomic Location for CLTC
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the CLTC gene Entrez Gene cytogenetic band: 17q11-qter Ensembl cytogenetic band: 17q23.1 HGNC cytogenetic band: 17q11-qter CLTC Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 17 GeneLoc Exon Structure
GeneLoc location for GC17P055052:
(about GC identifiers )
Start:
55,051,832 bp from pter
End:
55,129,099 bp from pter
Size:
77,268 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000017.9 NT_010783.14 Proteins for CLTC
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: CLH1_HUMAN, Q00610 (See
protein sequence )Recommended Name: Clathrin heavy chain 1 Size : 1675 amino acids; 191615 Da
Subunit : Clathrin triskelions, composed of 3 heavy chains and 3 light chains, are the basicsubunits of the clathrin coat. In the presence of light chains, hub assembly is influenced by boththe pH and the concentration of calcium. Interacts with HIP1
Subcellular location : Cytoplasmic vesicle membrane; Peripheral membrane protein; Cytoplasmic side.Membrane, coated pit; Peripheral membrane protein; Cytoplasmic side. Melanosome. Note=Cytoplasmicface of coated pits and vesicles. Identified by mass spectrometry in melanosome fractions fromstage I to stage IV
Secondary accessions : Q6N0A0 Q86TF2Alternative splicing : 2 isoforms : Q00610-1 Q00610-2
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_004850.1 ENSEMBL proteins: ENSP00000269122 ENSP00000376763 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 5/6 Gene Ontology (GO) cellular component terms (links to tree view) (see all 6
):
About this table Antibodies for CLTC: Assays for CLTC:
Protein
Domains/ Families for CLTC(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q00610 ProtoNet protein and cluster: Q00610
1 Blocks protein family : IPB000547 7-Fold repeat in clathrin and VPS proteins UniProtKB/Swiss-Prot: CLH1_HUMAN, Q00610 Similarity : Belongs to the clathrin heavy chain family
Gene Function for CLTC
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): BC051800 Applied Biosystems Silencer ® siRNAs for CLTC Sigma-Aldrich siRNA for CLTC Sigma-Aldrich shRNA for CLTC Explore Sigma-Aldrich super-pooled esiRNAs               OriGene GFP tagged cDNA clone in CMV expression vector: NM_004859                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_004859                                  untagged cDNA clones in CMV expression vector (see all 2 ): BC051800  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_004859 UniProtKB/Swiss-Prot: CLH1_HUMAN, Q00610 Function : Clathrin is the major protein of the polyhedral coat of coated pits and vesicles. Twodifferent adapter protein complexes link the clathrin lattice either to the plasma membrane or tothe trans-Golgi network
Genatlas biochemistry entry for CLTC :clathrin,heavy chain 1,ubiquitously expressed,component of coated vesicles and coatedpits,translocated to plasma membrane through AP2 binding,also expressed in synaptic vesicles 2 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for CLTC
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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4 Sigma-Aldrich "Your Favorite Gene" Pathways for CLTC (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for CLTC 5/167 Interacting proteins for CLTC (ENSP00000269122 3 Q00610 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 167
)About this table 2 Gene Ontology (GO) biological process terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006886 intracellular protein transport
NAS 1765375 GO:0016192 vesicle-mediated transport
IEA --
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Drugs & Compounds for CLTC (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for CLTC
Transcripts for CLTC(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
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shRNA from
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OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): BC051800 Sigma-Aldrich siRNA for CLTC Sigma-Aldrich shRNA for CLTC Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_004859
REFSEQ mRNAs for CLTC gene: NM_004859.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_004859
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_004859                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_004859                                  untagged cDNA clones in CMV expression vector (see all 2 ): BC051800  
Additional cDNA sequence: AB073891.1 AF130062.1 AK127134.1 BC015854.1 BC036430.1 BC051800.2 BC054489.1 BX640615.1 CR616097.1 CR617482.1 CR625541.1 D21260.1 X55878.1
24/46 DOTS entries (see all 46
): DT.219977 DT.91887587 DT.95338490 DT.120930523 DT.95155315 DT.95367945 DT.92471783 DT.100728189 DT.100882689 DT.100672405 DT.120930474 DT.120930620 DT.100882683 DT.95367962 DT.97864554 DT.100882690 DT.40281160 DT.403696 DT.92471757 DT.95367929 DT.120930529 DT.120930740 DT.304623 DT.95367944
24/991 AceView cDNA sequences (see all 991
):AA877897 CD654636 AI371863 BP377054 BQ640056 BU740091 AA723567 BF983747 BQ213665 BQ220425 BP382928 BG105441 BG680812 CA419015 CA429666 CR625541 D45298 CA866004 AL555734 BU507459 BP362844 BM804243 AA361745 AL699458
highest scoring ESTs for CLTC :D21260 AA351469 AA374706 AA620496 AA829032 AI355350 AI983431 AK127134 AU159938 AV681786
Unigene Cluster for CLTC: Clathrin, heavy chain (Hc) Hs.491351 [show with all ESTs ] Unigene Representative Sequence: NM_004859 GeneLoc Exon Structure 5/11 Alternative Splicing Database (ASD) splice patterns (SP) for CLTC (see all 11
) ExUns: 1 ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10a · 10b ^ 11a · 11b ^ 12 ^ 13 ^ 14a · 14b ^ 15 ^ 16 ^ 17 ^ 18 ^ 19a · 19b ^ 20 ^ SP1 :     -             -           -           -     -             SP2 :                 -           -           -     -             SP3 :     -             -           -           -     -             SP4 :                                                     SP5 :                                                    
ExUns: 21 ^ 22 ^ 23 ^ 24 ^ 25 ^ 26 ^ 27 ^ 28a · 28b ^ 29a · 29b ^ 30 ^ 31a · 31b ^ 32 ^ 33a · 33b ^ 34a · 34b · 34c ^ 35a · 35b · 35c SP1 :                               -   -   -     -         SP2 :                               -   -   -     -         SP3 :                               -   -   -             SP4 :                                               SP5 :                                 -   -     -        
About this scheme ECgene alternative splicing isoforms for CLTC 2 Ensembl transcripts including schematic representations : ENST00000269122
ENST00000393043
Expression for CLTC
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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CLTC expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for CLTC 1 / 2 / 3
5 probe-sets matching CLTC gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: ATATTGTGCCSOURCE GeneReport for Unigene cluster: Hs.491351 Expression variation in blood from EXPOLDB for CLTC
Orthologs for CLTC
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for CLTC gene from 5/24 species (see all 24
)
About this table Species with no ortholog for CLTC ENSEMBL Gene Tree for CLTC Paralogs for CLTC (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for CLTC gene CLTCL1 2
SNPs/Variants for CLTC (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for CLTC (up to first 250kb)
Disorders & Mutations for CLTC
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 118955 1 PharmGKB disease relationship for CLTC gene About this table
Medical News for CLTC (Possibly Related Articles in
Doctor's Guide )
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--
Publications for CLTC (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/80 PubMed articles for CLTC gene (see all 80
): Prediction of the coding sequences of unidentified human genes. I. The coding sequences of 40 new genes (KIAA0001-KIAA0040) deduced by analysis of randomly sampled cDNA clones from human immature myeloid cell line KG-1. (PubMed id 7584026) 2, 3, 4 Nomura N....Tabata S. (1994) Human clathrin heavy chain (CLTC): partial molecular cloning, expression, and mapping of the gene to human chromosome 17q11-qter. (PubMed id 1765375) 2, 3, 4 Dodge G.R.... Iozzo R.V. (1991) Proteomic and bioinformatic characterization of the biogenesis and function of melanosomes. (PubMed id 17081065) 3, 4 Chi A....Hunt D.F. (2006) Large-scale characterization of HeLa cell nuclear phosphoproteins. (PubMed id 15302935) 3, 4 Beausoleil S.A....Gygi S.P. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides. (PubMed id 12665801) 3, 4 Gevaert K.... Vandekerckhove J. (2003) The huntingtin interacting protein HIP1 is a clathrin and alpha-adaptin-binding protein involved in receptor-mediated endocytosis. (PubMed id 11532990) 3, 4 Waelter S....Wanker E.E. (2001) Clathrin-dependent trafficking of subtilase cytotoxin, a novel AB5 toxin that targets the endoplasmic reticulum chaperone BiP. (PubMed id 18042253) 3 Chong D.C....Paton A.W. (2008) Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle. (PubMed id 18691976) 4 Daub H.... Mann M. (2008) A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648) 4 Dephoure N.... Gygi S.P. (2008)
Search for CLTC
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Genome Databases showing CLTC
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing CLTC
(According to HUGE )
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Specialized Databases showing CLTC (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for CLTC (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for CLTC:
Antibodies & Assays for CLTC   (Clathrin Heavy Chain)
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