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Aliases for CLSTN2-AS1 Gene

Subcategory (RNA class) for CLSTN2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CLSTN2-AS1 Gene

  • CLSTN2 Antisense RNA 1 2 3 5

External Ids for CLSTN2-AS1 Gene

Previous GeneCards Identifiers for CLSTN2-AS1 Gene

  • GC03M140225

Summaries for CLSTN2-AS1 Gene

GeneCards Summary for CLSTN2-AS1 Gene

CLSTN2-AS1 (CLSTN2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CLSTN2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CLSTN2-AS1 Gene

Genomics for CLSTN2-AS1 Gene

Regulatory Elements for CLSTN2-AS1 Gene

Enhancers for CLSTN2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H140466 1.3 FANTOM5 Ensembl ENCODE 10.7 +41.4 41373 1 ZBTB21 JUN BACH1 FOSL1 ZNF366 FOS NFE2 ZNF584 TCF7L2 ZNF639 CLSTN2-AS1 ENSG00000251058 LOC105374132
GH03H140527 0.6 ENCODE 11.8 -20.7 -20702 3 SREBF1 MAZ CTBP1 HLF MNT FOS DPF2 CLSTN2-AS1 GC03P140509 GC03P140571
GH03H140719 0.4 ENCODE 5.9 -211.3 -211255 1 NR2F2 TRIM42 CLSTN2-AS1 GC03P140715 ENSG00000261826
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CLSTN2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CLSTN2-AS1 Gene

Chromosome:
3
Start:
140,505,611 bp from pter
End:
140,508,789 bp from pter
Size:
3,179 bases
Orientation:
Minus strand

Genomic View for CLSTN2-AS1 Gene

Genes around CLSTN2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CLSTN2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CLSTN2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CLSTN2-AS1 Gene

Proteins for CLSTN2-AS1 Gene

Post-translational modifications for CLSTN2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CLSTN2-AS1 Gene

Domains & Families for CLSTN2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CLSTN2-AS1 Gene

Function for CLSTN2-AS1 Gene

Phenotypes From GWAS Catalog for CLSTN2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CLSTN2-AS1 Gene

Localization for CLSTN2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CLSTN2-AS1 Gene

Pathways & Interactions for CLSTN2-AS1 Gene

SuperPathways for CLSTN2-AS1 Gene

No Data Available

Interacting Proteins for CLSTN2-AS1 Gene

Gene Ontology (GO) - Biological Process for CLSTN2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CLSTN2-AS1 Gene

Drugs & Compounds for CLSTN2-AS1 Gene

No Compound Related Data Available

Transcripts for CLSTN2-AS1 Gene

mRNA/cDNA for CLSTN2-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CLSTN2-AS1 Gene

No ASD Table

Relevant External Links for CLSTN2-AS1 Gene

GeneLoc Exon Structure for
CLSTN2-AS1
ECgene alternative splicing isoforms for
CLSTN2-AS1

Expression for CLSTN2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CLSTN2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CLSTN2-AS1 Gene

This gene is overexpressed in Testis (x16.0) and Kidney - Cortex (x5.0).
genes like me logo Genes that share expression patterns with CLSTN2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CLSTN2-AS1 Gene

Orthologs for CLSTN2-AS1 Gene

Evolution for CLSTN2-AS1 Gene

ENSEMBL:
Gene Tree for CLSTN2-AS1 (if available)
TreeFam:
Gene Tree for CLSTN2-AS1 (if available)

No data available for Orthologs for CLSTN2-AS1 Gene

Paralogs for CLSTN2-AS1 Gene

No data available for Paralogs for CLSTN2-AS1 Gene

Variants for CLSTN2-AS1 Gene

Sequence variations from dbSNP and Humsavar for CLSTN2-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1001557234 -- 140,505,186(+) GGAGC(A/T)GGTGG intron-variant
rs1001903271 -- 140,505,488(+) GCAGT(C/T)CCCAG intron-variant
rs1003068288 -- 140,508,801(+) GAAAT(C/T)CATGA intron-variant, upstream-variant-2KB
rs1003340865 -- 140,508,469(+) TTACC(G/T)TGAGA intron-variant, nc-transcript-variant
rs1004983911 -- 140,505,200(+) AGATG(C/T)GGCTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CLSTN2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2759181 CNV gain+loss 17122850
esv34489 CNV gain 17911159
esv3597954 CNV gain 21293372
esv3597960 CNV gain 21293372
nsv527831 CNV gain 19592680
nsv591863 CNV gain 21841781

Relevant External Links for CLSTN2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CLSTN2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CLSTN2-AS1 Gene

Disorders for CLSTN2-AS1 Gene

Relevant External Links for CLSTN2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CLSTN2-AS1

No disorders were found for CLSTN2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CLSTN2-AS1 Gene

Publications for CLSTN2-AS1 Gene

No publications were found for CLSTN2-AS1 Gene.

Products for CLSTN2-AS1 Gene

Sources for CLSTN2-AS1 Gene

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