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Aliases for CLSTN2-AS1 Gene

Subcategory (RNA class) for CLSTN2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CLSTN2-AS1 Gene

  • CLSTN2 Antisense RNA 1 2 3 5

External Ids for CLSTN2-AS1 Gene

Previous GeneCards Identifiers for CLSTN2-AS1 Gene

  • GC03M140225

Summaries for CLSTN2-AS1 Gene

GeneCards Summary for CLSTN2-AS1 Gene

CLSTN2-AS1 (CLSTN2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CLSTN2-AS1 Gene

Genomics for CLSTN2-AS1 Gene

Regulatory Elements for CLSTN2-AS1 Gene

Enhancers for CLSTN2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F140466 1.5 FANTOM5 Ensembl ENCODE 10.7 +41.4 41373 1.5 INSM2 KLF17 FEZF1 ZNF2 ZNF366 SCRT2 ZNF391 FOS ZNF362 SP3 CLSTN2-AS1 ENSG00000251058 LOC105374132
GH03F140527 0.6 ENCODE 11.8 -20.7 -20702 3.5 SREBF1 CTBP1 HLF MNT KLF4 FOS CLSTN2-AS1 GC03P140509 GC03P140571
GH03F140719 0.5 ENCODE 5.9 -211.3 -211255 1.5 SMARCA4 MNT NR2F2 TRIM42 CLSTN2-AS1 GC03P140715 ENSG00000261826
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CLSTN2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CLSTN2-AS1 Gene

Chromosome:
3
Start:
140,505,611 bp from pter
End:
140,508,789 bp from pter
Size:
3,179 bases
Orientation:
Minus strand

Genomic View for CLSTN2-AS1 Gene

Genes around CLSTN2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CLSTN2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CLSTN2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CLSTN2-AS1 Gene

Proteins for CLSTN2-AS1 Gene

Post-translational modifications for CLSTN2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CLSTN2-AS1 Gene

Domains & Families for CLSTN2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CLSTN2-AS1 Gene

Function for CLSTN2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CLSTN2-AS1 Gene

Localization for CLSTN2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CLSTN2-AS1 Gene

Pathways & Interactions for CLSTN2-AS1 Gene

SuperPathways for CLSTN2-AS1 Gene

No Data Available

Interacting Proteins for CLSTN2-AS1 Gene

Gene Ontology (GO) - Biological Process for CLSTN2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CLSTN2-AS1 Gene

Transcripts for CLSTN2-AS1 Gene

mRNA/cDNA for CLSTN2-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CLSTN2-AS1 Gene

No ASD Table

Relevant External Links for CLSTN2-AS1 Gene

GeneLoc Exon Structure for
CLSTN2-AS1
ECgene alternative splicing isoforms for
CLSTN2-AS1

Expression for CLSTN2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CLSTN2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CLSTN2-AS1 Gene

This gene is overexpressed in Testis (x16.0) and Kidney - Cortex (x5.0).
genes like me logo Genes that share expression patterns with CLSTN2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CLSTN2-AS1 Gene

Orthologs for CLSTN2-AS1 Gene

Evolution for CLSTN2-AS1 Gene

ENSEMBL:
Gene Tree for CLSTN2-AS1 (if available)
TreeFam:
Gene Tree for CLSTN2-AS1 (if available)

No data available for Orthologs for CLSTN2-AS1 Gene

Paralogs for CLSTN2-AS1 Gene

No data available for Paralogs for CLSTN2-AS1 Gene

Variants for CLSTN2-AS1 Gene

Sequence variations from dbSNP and Humsavar for CLSTN2-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs10671000 -- 140,508,250(+) TGCTG(-/AGTT)AGTTT intron-variant, nc-transcript-variant
rs112309310 -- 140,506,147(+) AATCA(C/T)TCTCT intron-variant, nc-transcript-variant
rs112319125 -- 140,506,289(+) AAGCC(A/G)TGTCA intron-variant
rs113310465 -- 140,505,545(+) TTTTT(C/G)TATGT intron-variant
rs113776436 -- 140,505,739(+) TTGCA(-/AGG)AGGAT intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for CLSTN2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv591863 CNV gain 21841781
nsv527831 CNV gain 19592680
esv3597960 CNV gain 21293372
esv3597954 CNV gain 21293372
esv34489 CNV gain 17911159
esv2759181 CNV gain+loss 17122850

Relevant External Links for CLSTN2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CLSTN2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CLSTN2-AS1 Gene

Disorders for CLSTN2-AS1 Gene

Relevant External Links for CLSTN2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CLSTN2-AS1

No disorders were found for CLSTN2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CLSTN2-AS1 Gene

Publications for CLSTN2-AS1 Gene

No publications were found for CLSTN2-AS1 Gene.

Products for CLSTN2-AS1 Gene

Sources for CLSTN2-AS1 Gene

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